Zootoca vivipara (common lizard): 118095071
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Entry
118095071 CDS
T07275
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
zvi
Zootoca vivipara (common lizard)
Pathway
zvi03030
DNA replication
zvi03410
Base excision repair
zvi03420
Nucleotide excision repair
zvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118095071 (LIG1)
03410 Base excision repair
118095071 (LIG1)
03420 Nucleotide excision repair
118095071 (LIG1)
03430 Mismatch repair
118095071 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zvi03032
]
118095071 (LIG1)
03400 DNA repair and recombination proteins [BR:
zvi03400
]
118095071 (LIG1)
Enzymes [BR:
zvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118095071 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
118095071 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118095071 (LIG1)
DNA replication proteins [BR:
zvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118095071 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118095071 (LIG1)
DNA repair and recombination proteins [BR:
zvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118095071 (LIG1)
NER (nucleotide excision repair)
Other NER factors
118095071 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
118095071 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
118095071
NCBI-ProteinID:
XP_034991874
LinkDB
All DBs
Position
LG13:complement(26765083..26789331)
Genome browser
AA seq
1009 aa
AA seq
DB search
MQSTIRSFFQPLAQTKTGKEAAEKNNLEEEPAPKRKLVDSEPQVPVNGTTHHANSPVNTA
TPKTTSDLKSEEDSGKPKQKDTEADNNKQVSDCVPEQKIPVQSTSQSTSPGTSNSPSPTY
IPRRRTARKQLPKRKAEEEVSNHDSIQLDVCTKRWKGDDVDGEGTKGEPDEGSIKTEEVK
DYNSEQVQVKVERDAEEETTPAPPKPSSKPISNFFARKQLPKRKAEEEVSNHDSIQLDVC
TKRWKGDDVDGEGTKGEPDEGSIKTEEVKDYNSEQVQVKVERDAEEETTPAPLKPSSKPI
SNFFAPWKASMKTEKKEAPVIGGNMPAPKSLNEVNGHESNSKADCSAKPSLTLEPTNYNP
MKGNYHPINDACWGPGQRVPYLAVARTFEKIEEESARLKIIETLSNLFRSVIALSPEDLL
PCVYLCLNQLGPAYEGLELGIGKTILMKALAQATGRNLDQIKAEAAEKGDLGLVAESSRS
TQGTMFAPPKLGAASVFGKLQAIGRMTGSSSMNKKIDIIKTLFVACRYSEARYVARSLEG
KLRIGLAEQSVLSALAQAASLTPPGQKFPPEVVDASKGKSAEVRKNWLDERALIVKQAFC
ELPNYDTIVPVLLEHGVESLPHHCKITPGIPLKPMLAHPTKGIGEVLKRFEEAAFTCEYK
YDGERAQIHILENGEVHIYSRNQENNTTKYPDIVSRIPKVKKSTVQSCILDAEAVAWDPN
SKQIQPFQVLTTRKRKDVEATEIRVQVCVYAFDMLFLNGQSLVRKPLSERRALLHDSFNE
VEGQFLFATSMDTSNTDEIADFLERSVKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKD
YLEGVGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEDSEEFQSICKIGTGFTDDNLEEF
HTSLKDHVIPQPRPYYRWGGTAEPDHWLEAQHVWEVKCADLSISPVHKAATGLVDEEKGI
SLRFPRFRRIRDDKKPEEATTSTQVAELYRMQQQIQNQQSVEKGDDDFY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagcactataagatcattcttccagcccctggcacaaacaaagactggaaaagaa
gcagcagagaagaataacctggaagaggagcctgcccccaaaaggaaacttgtagattct
gaaccacaggtaccggtaaatggtacaacacaccatgcaaattccccagtgaatactgca
accccaaaaaccacctctgaccttaaaagtgaagaagattctgggaaaccaaaacaaaag
gatacagaggcagataataacaagcaggtttctgactgtgttcctgagcaaaagattcct
gtgcagagcacctcacaaagcaccagcccaggtacctctaattcaccctcacccacctac
attccccggcgcagaacagcccgcaagcagctccctaaacgtaaagcagaggaagaagtc
agtaaccatgatagcattcagctggacgtttgtaccaaaagatggaaaggagatgatgtg
gatggagagggcacaaaaggggagccagatgaggggtccatcaagacagaagaagtgaaa
gattataattcagaacaggtgcaggtaaaagttgagagagatgcagaggaagagacaaca
ccagcaccccctaagccatccagcaagcccatctctaatttttttgcccgcaagcagctc
cctaaacgtaaagcagaggaagaagtcagtaaccatgatagcattcagctggacgtttgt
accaaaagatggaaaggagatgatgtggatggagagggcacaaaaggggagccagatgag
gggtccattaagacagaagaagtgaaagattataattcagaacaagtgcaggtaaaagtt
gagagagatgcagaggaagagacaacaccagcaccccttaagccatccagcaagcccatc
tctaatttttttgccccttggaaagcctctatgaagacagagaaaaaagaagcaccggtg
ataggaggaaacatgcctgcaccaaagagccttaatgaagttaatggccatgaatctaat
agcaaagctgactgttctgccaagccatctcttacacttgagcctacaaattacaaccca
atgaagggaaactatcatcctataaacgatgcttgttggggccctggccagagggtgcca
tacctggcagtggctcgtacctttgagaagattgaggaggaatctgcccggttgaaaatt
atagagaccctgagcaatcttttccgctctgtgattgctctgtctccagaagacttgctg
ccctgtgtctacctctgtctcaaccagttaggcccagcatatgagggcctagagttgggc
attggtaaaaccatcctcatgaaagctttggctcaggccacaggtcgtaatttggaccag
atcaaggcagaagcagcagaaaagggagacctgggtttggttgctgagagtagccgcagt
acacagggtaccatgtttgccccacccaagcttggtgctgcttctgtctttggcaaactt
caggctattgggcgcatgacaggaagctcttcaatgaacaagaagattgacattatcaag
actttgtttgttgcttgtcgctattcagaggctcgctatgttgctcggtcactagaagga
aaactgagaattgggttagcagaacagtctgtcctgtctgctctggcccaggcagcatca
ctcactcctccaggacaaaaatttcccccagaagttgtggatgcttcaaagggcaagtct
gcagaagtgcgcaaaaactggttggacgagagagcattgattgttaaacaggccttctgt
gagctgccaaattatgataccattgtgcctgtccttctggaacatggtgtggagagtctg
cctcatcactgcaagatcacaccggggattccactgaagcccatgctggctcacccaaca
aagggaattggggaagtattaaagcgatttgaagaggcagctttcacctgtgaatacaaa
tatgatggggagcgagcacagatacacatcctggagaatggagaagtgcacatctatagc
cggaaccaagagaacaacacaacaaagtaccctgacattgtcagccgtatccccaaggta
aaaaagagcactgtgcaatcatgcatcttggatgcggaagctgtggcctgggatcccaat
tccaaacagatccagccattccaggtactcaccacccgcaagcgcaaggatgtagaggcc
acagagatccgagtgcaggtttgtgtgtatgcattcgacatgctcttccttaatggacag
tctctagtccggaaacccctatctgagcgccgggctttgcttcatgattccttcaatgaa
gttgaaggccagttcctgtttgcaacctccatggacactagtaacactgacgagatagca
gacttcctggaacgctccgtcaaagactcatgcgaagggctaatggtgaaaaccctggaa
gtggatgccacatatgaaattgcaaaaagatctcacaactggctgaagcttaagaaagat
tatctggagggtgttggcgacaccttggaccttgtggtgatcggtgcctatctgggcaag
ggcaaacgtgcaggcatatatggtggtttcctcttggcctgctatgatgaggatagcgag
gagttccagagcatctgcaagattggcactggattcacagatgacaacctagaagaattc
cacacctctctcaaggaccatgtgattccacagccacgaccctactaccgctggggtgga
acagctgagcctgaccactggctagaggctcagcatgtctgggaggtgaagtgtgctgac
ttatccatttctccagtccacaaagcagcaactggtttggttgatgaagaaaagggcatc
tccctccgctttcccagattccgacgcatccgagatgataagaaaccagaggaagccact
accagtactcaggtggctgagttgtaccggatgcagcagcagattcagaatcagcaatca
gtggaaaaaggagatgatgatttctactaa
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integrated database retrieval system
