KEGG   COMPOUND: C00062
Entry
C00062                      Compound                               
Name
L-Arginine;
(S)-2-Amino-5-guanidinovaleric acid;
L-Arg
Formula
C6H14N4O2
Exact mass
174.1117
Mol weight
174.20
Structure
Remark
Same as: D02982
Reaction
R00551 R00552 R00554 R00557 R00558 R00559 R00562 R00563
R00565 R00566 R00567 R00735 R00832 R00912 R01086 R01686
R01886 R01989 R03477 R03646 R05465 R05547 R08197 R09363
R09593 R09785 R10081 R10106 R10107 R10880 R11031 R11032
R11033 R11085 R11604 R11711 R11712 R12506 R12572 R12573
R12706 R12707 R12929 R13305 R13308 R13429 R13430
Pathway
map00220  Arginine biosynthesis
map00261  Monobactam biosynthesis
map00330  Arginine and proline metabolism
map00331  Clavulanic acid biosynthesis
map00470  D-Amino acid metabolism
map00970  Aminoacyl-tRNA biosynthesis
map00998  Biosynthesis of various antibiotics
map01060  Biosynthesis of plant secondary metabolites
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04148  Efferocytosis
map04150  mTOR signaling pathway
map04974  Protein digestion and absorption
map05014  Amyotrophic lateral sclerosis
map05022  Pathways of neurodegeneration - multiple diseases
map05142  Chagas disease
map05146  Amoebiasis
map05230  Central carbon metabolism in cancer
Module
M00029  Urea cycle
M00047  Creatine pathway
M00133  Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
M00134  Polyamine biosynthesis, arginine => ornithine => putrescine
M00674  Clavaminate biosynthesis, arginine + glyceraldehyde-3P => clavaminate
M00736  Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A
M00785  Cycloserine biosynthesis, arginine/serine => cycloserine
M00844  Arginine biosynthesis, ornithine => arginine
M00845  Arginine biosynthesis, glutamate => acetylcitrulline => arginine
M00879  Arginine succinyltransferase pathway, arginine => glutamate
M00947  D-Arginine racemization, D-arginine => L-arginine
M00978  Ornithine-ammonia cycle
Network
nt06033  Glycine, serine and arginine metabolism
nt06535  Efferocytosis
Enzyme
1.4.1.25        1.4.3.25        1.5.1.11        1.5.1.19        
1.13.12.1       1.14.11.41      1.14.13.39      1.14.14.47      
1.14.20.7       2.1.1.381       2.1.4.1         2.1.4.2         
2.1.4.3         2.1.4.4         2.1.4.5         2.3.1.109       
2.5.1.66        2.6.1.84        2.6.1.125       2.7.3.3         
3.2.2.19        3.5.3.1         3.5.3.6         3.5.3.27        
4.1.1.19        4.3.2.1         5.1.1.9         5.1.1.10        
6.1.1.19        6.2.1.63        6.3.2.11        6.3.2.24        
6.3.2.30        6.3.2.48
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00062  Arginine (Arg)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   L-Arginine
    D02982  Arginine (USP/INN)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D02982  L-Arginine
Other DBs
CAS: 74-79-3
PubChem: 3362
KNApSAcK: C00001340
PDB-CCD: ARG[PDBj] GND[PDBj]
NIKKAJI: J9.182K
LinkDB
KCF data

ATOM        12
            1   C1b C    24.1085  -18.0306
            2   C1b C    25.3110  -18.7488
            3   C1c C    22.8766  -18.7137
            4   C1b C    26.5369  -18.0657
            5   C6a C    21.7324  -17.9664
            6   N1a N    22.9232  -20.1148
            7   N1b N    27.7453  -18.7779
            8   O6a O    20.5065  -18.6494
            9   O6a O    21.6856  -16.5596
            10  C2c C    28.9714  -18.1007
            11  N1a N    30.1739  -18.8129
            12  N2a N    28.9888  -16.6938
BOND        11
            1     1   2 1
            2     1   3 1
            3     2   4 1
            4     3   5 1
            5     3   6 1 #Down
            6     4   7 1
            7     5   8 1
            8     5   9 2
            9     7  10 1
            10   10  11 1
            11   10  12 2

» Japanese version

KEGG   COMPOUND: C00047
Entry
C00047                      Compound                               
Name
L-Lysine;
Lysine acid;
2,6-Diaminohexanoic acid
Formula
C6H14N2O2
Exact mass
146.1055
Mol weight
146.19
Structure
Remark
Same as: D02304
Reaction
R00445 R00446 R00447 R00448 R00449 R00451 R00452 R00453
R00454 R00457 R00458 R00459 R00460 R00461 R00462 R00463
R00545 R00612 R00715 R00716 R00910 R00911 R01077 R01396
R01620 R02786 R03095 R03658 R07598 R07646 R08125 R09597
R09779 R10010 R10011 R10054 R10277 R10699 R11190 R11862
R12407 R12506 R13534 R13535
Pathway
map00300  Lysine biosynthesis
map00310  Lysine degradation
map00470  D-Amino acid metabolism
map00780  Biotin metabolism
map00960  Tropane, piperidine and pyridine alkaloid biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map00997  Biosynthesis of various other secondary metabolites
map01060  Biosynthesis of plant secondary metabolites
map01064  Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
map01120  Microbial metabolism in diverse environments
map01210  2-Oxocarboxylic acid metabolism
map01230  Biosynthesis of amino acids
map02010  ABC transporters
map04974  Protein digestion and absorption
Module
M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
M00030  Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine
M00031  Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine
M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA
M00525  Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine
M00526  Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine
M00527  Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
M00906  Ethynylserine biosynthesis, lysine => ethynylserine
M00918  Aerobactin biosynthesis, lysine => aerobactin
M00956  Lysine degradation, bacteria, L-lysine => succinate
M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
M00960  Lysine degradation, bacteria, L-lysine => D-lysine => succinate
Network
nt06036  Lysine degradation
Enzyme
1.4.1.15        1.4.1.18        1.4.3.14        1.4.3.20        
1.5.1.7         1.5.1.8         1.5.1.16        1.5.3.4         
1.13.12.2       1.14.13.59      1.14.20.-       2.1.3.8         
2.1.4.3         2.3.1.32        2.3.1.306       2.6.1.36        
2.6.1.71        2.6.1.105       3.4.13.4        3.4.14.13       
3.5.1.12        3.5.1.17        3.5.1.130       3.5.2.11        
3.5.-.-         4.1.1.18        4.1.1.20        4.3.1.28        
4.3.2.8         5.1.1.5         5.1.1.10        5.4.3.2         
5.4.99.58       6.1.1.6         6.2.1.77        6.3.2.7         
6.3.2.11        6.3.2.20        6.3.2.59        6.3.4.19
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Common amino acids
    C00047  Lysine (Lys)
Anatomical Therapeutic Chemical (ATC) classification [BR:br08303]
 B BLOOD AND BLOOD FORMING ORGANS
  B05 BLOOD SUBSTITUTES AND PERFUSION SOLUTIONS
   B05X I.V. SOLUTION ADDITIVES
    B05XB Amino acids
     B05XB03 Lysine
      D02304  Lysine (USAN/INN)
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Lysine
    D02304  Lysine (USAN/INN)
Other DBs
CAS: 56-87-1
PubChem: 3349
KNApSAcK: C00001378
PDB-CCD: LYS[PDBj]
NIKKAJI: J9.176F
LinkDB
KCF data

ATOM        10
            1   C1c C    29.3300  -16.8700
            2   C1b C    28.1400  -16.1700
            3   C6a C    30.5200  -16.1000
            4   N1a N    29.3300  -18.2700
            5   C1b C    26.9500  -16.8700
            6   O6a O    31.7100  -16.8000
            7   O6a O    30.5200  -14.7000
            8   C1b C    25.6900  -16.2400
            9   C1b C    24.5000  -16.9400
            10  N1a N    23.2400  -16.2400
BOND        9
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Up
            4     2   5 1
            5     3   6 1
            6     3   7 2
            7     5   8 1
            8     8   9 1
            9     9  10 1

» Japanese version

KEGG   COMPOUND: C16138
Entry
C16138                      Compound                               
Name
L-Pyrrolysine;
Pyrrolysine
Formula
C12H21N3O3
Exact mass
255.1583
Mol weight
255.31
Structure
Reaction
R08578 R10013
Pathway
map00300  Lysine biosynthesis
map00970  Aminoacyl-tRNA biosynthesis
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map04974  Protein digestion and absorption
Enzyme
6.1.1.26
Brite
Compounds with biological roles [BR:br08001]
 Peptides
  Amino acids
   Other amino acids
    C16138  Pyrrolysine (Pyl)
Other DBs
CAS: 448235-52-7
PubChem: 47205448
PDB-CCD: PYL[PDBj]
NIKKAJI: J1.888.988I
LinkDB
KCF data

ATOM        18
            1   C1x C    16.5900  -28.4200
            2   C1y C    17.9900  -28.4200
            3   C1y C    18.4226  -27.0885
            4   N2x N    17.2900  -26.2656
            5   C2x C    16.1574  -27.0885
            6   C5a C    19.6224  -26.3900
            7   N1b N    20.8349  -27.0900
            8   C1b C    22.0473  -26.3900
            9   C1b C    23.2597  -27.0900
            10  C1b C    24.4722  -26.3900
            11  C1b C    25.6846  -27.0900
            12  C1c C    26.8970  -26.3900
            13  C6a C    28.1095  -27.0900
            14  O6a O    29.3219  -26.3900
            15  O5a O    19.6199  -24.9901
            16  N1a N    26.8970  -24.9901
            17  O6a O    28.1095  -28.4897
            18  C1a C    18.8129  -29.5526
BOND        18
            1     1   2 1
            2     2   3 1
            3     3   4 1
            4     4   5 2
            5     1   5 1
            6     3   6 1 #Up
            7     6   7 1
            8     7   8 1
            9     8   9 1
            10    9  10 1
            11   10  11 1
            12   11  12 1
            13   12  13 1
            14   13  14 1
            15    6  15 2
            16   12  16 1 #Down
            17   13  17 2
            18    2  18 1 #Down

» Japanese version

KEGG   COMPOUND: C00491
Entry
C00491                      Compound                               
Name
L-Cystine;
L-Dicysteine;
L-alpha-Diamino-beta-dithiolactic acid
Formula
C6H12N2O4S2
Exact mass
240.0238
Mol weight
240.31
Structure
Remark
Same as: D03636
Reaction
R00892 R01113 R02408 R02409
Pathway
map00270  Cysteine and methionine metabolism
map01100  Metabolic pathways
map02010  ABC transporters
map04216  Ferroptosis
map04974  Protein digestion and absorption
Enzyme
1.8.1.6         1.8.4.3         1.8.4.4         4.4.1.1         
4.4.1.13        4.4.1.35
Brite
Risk category of Japanese OTC drugs [BR:br08312]
 Third-class OTC drugs
  Inorganic and organic chemicals
   Cystine
    D03636  Cystine (USAN/INN)
Drugs listed in the Japanese Pharmacopoeia [BR:br08311]
 Chemicals
  D03636  L-Cystine
Other DBs
CAS: 56-89-3
PubChem: 3774
KNApSAcK: C00001352
PDB-CCD: IYY[PDBj]
NIKKAJI: J9.172C
LinkDB
KCF data

ATOM        14
            1   C1c C    25.0113  -15.1902
            2   C1b C    23.7988  -15.8898
            3   C6a C    26.2238  -15.8898
            4   N1a N    25.0113  -13.7911
            5   S3a S    22.5862  -15.1902
            6   O6a O    27.4364  -15.1902
            7   O6a O    26.2238  -17.2889
            8   S3a S    21.3795  -15.8898
            9   C1b C    20.1612  -15.1902
            10  C1c C    18.9487  -15.8898
            11  C6a C    17.7362  -15.1902
            12  N1a N    18.9487  -17.2889
            13  O6a O    16.5179  -15.8898
            14  O6a O    17.7362  -13.7911
BOND        13
            1     1   2 1
            2     1   3 1
            3     1   4 1 #Down
            4     2   5 1
            5     3   6 1
            6     3   7 2
            7     5   8 1
            8     8   9 1
            9     9  10 1
            10   10  11 1
            11   10  12 1 #Down
            12   11  13 1
            13   11  14 2

» Japanese version

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