KEGG   ORTHOLOGY: K05887
Entry
K05887                      KO                                     
Symbol
ydiB
Name
quinate/shikimate dehydrogenase [EC:1.1.1.282]
Pathway
map00400  Phenylalanine, tyrosine and tryptophan biosynthesis
map01100  Metabolic pathways
map01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:ko00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00400 Phenylalanine, tyrosine and tryptophan biosynthesis
    K05887  ydiB; quinate/shikimate dehydrogenase
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.282  quinate/shikimate dehydrogenase [NAD(P)+]
     K05887  ydiB; quinate/shikimate dehydrogenase
Other DBs
RN: R01872 R02413 R06846 R06847
COG: COG0169
GO: 0033706
Genes
ECO: b1692(ydiB)
ECJ: JW1682(ydiB)
ECD: ECDH10B_1828(ydiB)
EBW: BWG_1506(ydiB)
ECOK: ECMDS42_1365(ydiB)
ECE: Z2720(ydiB)
ECS: ECs_2399(ydiB)
ECF: ECH74115_2408
ETW: ECSP_2259(ydiB)
ELX: CDCO157_2233(aroE)
EOI: ECO111_2161(ydiB)
EOJ: ECO26_2420(ydiB)
EOH: ECO103_1835(ydiB)
ECOO: ECRM13514_2187(aroE)
ECOH: ECRM13516_2092(aroE)
ESL: O3K_11775
ESO: O3O_13860
ESM: O3M_11740
ECK: EC55989_1859(ydiB)
ECG: E2348C_1777(ydiB)
EOK: G2583_2089(ydiB)
ELH: ETEC_1725
ECP: ECP_1639
ENA: ECNA114_1739(ydiB)
ECOS: EC958_1912(ydiB)
ECV: APECO1_768(ydiB)
ECY: ECSE_1815
ECR: ECIAI1_1745(ydiB)
ECQ: ECED1_1891(ydiB)
EUM: ECUMN_1981(ydiB)
ECT: ECIAI39_1366(ydiB)
EOC: CE10_1966(ydiB)
EBR: ECB_01661(ydiB)
EBL: ECD_01661(ydiB)
EBE: B21_01650(ydiB)
EBD: ECBD_1954
ECI: UTI89_C1884(ydiB)
ECZ: ECS88_1742(ydiB)
ECC: c2087(ydiB)
ESE: ECSF_1552
EKF: KO11_14285(ydiB)
EAB: ECABU_c19460(ydiB)
EDJ: ECDH1ME8569_1636(ydiB)
ELW: ECW_m1861(ydiB)
ELL: WFL_09110(ydiB)
ELC: i14_1909(aroE)
ELD: i02_1909(aroE)
ELP: P12B_c1391(aroE)
ELF: LF82_2870(ydiB)
ECOI: ECOPMV1_01791(ydiB)
ECOJ: P423_09035
EFE: EFER_0091
ESZ: FEM44_23400(ydiB)
STM: STM1359(ydiB)
SEO: STM14_1650(aroE_1)
SEY: SL1344_1293(aroE)
SEJ: STMUK_1326(aroE)
SEB: STM474_1364(aroE)
SEF: UMN798_1416(aroE)
SENR: STMDT2_12921(aroE)
SEND: DT104_13371(aroE)
SENI: CY43_06920
SEI: SPC_2371(aroE)
SEC: SCH_1378(ydiB)
SHB: SU5_01977
SENS: Q786_08455
SED: SeD_A1984
SEG: SG1757(ydiB)
SEL: SPUL_1177(ydiB)
SEGA: SPUCDC_1177(ydiB)
SET: SEN1685(ydiB)
SENA: AU38_08725
SENO: AU37_08730
SENV: AU39_08735
SENQ: AU40_09735
SENL: IY59_08920
SEEP: I137_05420
SENE: IA1_06705
SFL: SF1722(aroE)
SFX: S1854(ydiB)
SFV: SFV_1718(ydiB)
SFE: SFxv_1929(ydiB)
SFN: SFy_2467
SFS: SFyv_2522
SFT: NCTC1_01868(ydiB)
SSN: SSON_1462(ydiB)
SDY: SDY_1475(ydiB)
ENF: AKI40_1900(ydiB)
KPU: KP1_0890(aroE)
KPP: A79E_4226
KPT: VK055_2498(ydiB)
KPO: KPN2242_02810(aroE)
KPR: KPR_0998
KPJ: N559_4356
KPX: PMK1_02383(aroE_2)
KPNU: LI86_22370
KPNK: BN49_4265
KVA: Kvar_4308
KPE: KPK_4667
KOX: KOX_10830(aroE)
KOE: A225_0875
KOY: J415_26885(aroE)
EAE: EAE_11160(aroE)
EAR: CCG31755
CPOT: FOB25_01110(ydiB)
CAMA: F384_06180
CTEL: GBC03_18520(ydiB)
CITZ: E4Z61_03985(ydiB)
CARS: E1B03_12065(ydiB)
SYM: K6K13_13495(ydiB)
METY: MRY16398_47470(aroE)
BIZ: HC231_04870(ydiB)
SUTK: FG381_00155(ydiB)
SWS: I6J16_03205(ydiB)
BAQ: BACAU_0778(aroE1)
BYA: BANAU_0723(aroE1)
BAMP: B938_03870
BQY: MUS_0802(aroE)
BAMA: RBAU_0782(ydiB)
BAMN: BASU_0758(ydiB)
BAMB: BAPNAU_0734(aroE1)
BAMT: AJ82_04495
BAMY: V529_07450
BMP: NG74_00799(aroE_1)
BAO: BAMF_0755(RBAM_008070)
BQL: LL3_00809
BAMI: KSO_015775
BAMC: U471_07900
BAMF: U722_04025
BACI: B1NLA3E_05085(aroE) B1NLA3E_05110(aroE)
BACP: SB24_05875
BACB: OY17_06660
BMQ: BMQ_0974(aroD)
BMD: BMD_0975(aroD) BMD_3610
BMEG: BG04_3263(aroE) BG04_523
LMOE: BN418_0563
LMOB: BN419_0569
LIV: LIV_2223
PPY: PPE_00893
PPM: PPSC2_04635(ydiB1)
PPO: PPM_0869(ydiB1)
PPOL: X809_04280
PPQ: PPSQR21_009250(aroE)
PPOY: RE92_07330
LCA: LSEI_0476
LCS: LCBD_0541(aroDE)
LCE: LC2W_0542(aroDE)
LCW: BN194_05480(aroE_2)
LPAP: LBPC_0442
LZE: KG087_02315(aroE)
LPJ: JDM1_2789(aroD3) JDM1_2790(aroD4)
LPT: zj316_0126(aroD3) zj316_0127(aroD4)
ECAS: ECBG_02583
EDU: LIU_07945
EGA: AL523_01565(aroE)
JAR: G7057_00650(aroE)
CKL: CKL_1014(aroE3)
CKR: CKR_0918
CSB: CLSA_c07000(aroE2) CLSA_c07040(aroE3)
CSQ: CSCA_1647
RUM: CK1_34250
OVA: OBV_35430(aroE)
BFI: CIY_16020
RIX: RO1_38400
RIM: ROI_16940
CCT: CC1_23550
BLAB: EYS05_11210(aroE)
CSCI: HDCHBGLK_02860(aroE)
EHL: EHLA_0534
RTO: RTO_32440
ERT: EUR_24270
ERA: ERE_09960
PDC: CDIF630_02965(aroE2)
CDC: CD196_2549(ydiB)
CDL: CDR20291_2596(ydiB)
PDF: CD630DERM_27080(aroE2)
ELM: ELI_0966
BPRS: CK3_17120
EBM: SG0102_23460(aroE)
TPYO: X956_05370
ELE: Elen_2551
XII: AMD24_00667(ydiB)
 » show all
Reference
  Authors
Michel G, Roszak AW, Sauve V, Maclean J, Matte A, Coggins JR, Cygler M, Lapthorn AJ
  Title
Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities.
  Journal
J Biol Chem 278:19463-72 (2003)
DOI:10.1074/jbc.M300794200
  Sequence
[eco:b1692]
LinkDB

KEGG   ENZYME: 1.1.1.282
Entry
EC 1.1.1.282                Enzyme                                 
Name
quinate/shikimate dehydrogenase [NAD(P)+];
YdiB;
quinate/shikimate dehydrogenase (ambiguous)
Class
Oxidoreductases;
Acting on the CH-OH group of donors;
With NAD+ or NADP+ as acceptor
Sysname
L-quinate:NAD(P)+ 3-oxidoreductase
Reaction(IUBMB)
(1) L-quinate + NAD(P)+ = 3-dehydroquinate + NAD(P)H + H+ [RN:R01872 R06846];
(2) shikimate + NAD(P)+ = 3-dehydroshikimate + NAD(P)H + H+ [RN:R02413 R06847]
Reaction(KEGG)
Substrate
L-quinate [CPD:C00296];
NAD+ [CPD:C00003];
NADP+ [CPD:C00006];
shikimate [CPD:C00493]
Product
3-dehydroquinate [CPD:C00944];
NADH [CPD:C00004];
NADPH [CPD:C00005];
H+ [CPD:C00080];
3-dehydroshikimate [CPD:C02637]
Comment
This is the second shikimate dehydrogenase enzyme found in Escherichia coli. It can use both quinate and shikimate as substrates and either NAD+ or NADP+ as acceptor. The low catalytic efficiency with both quinate and shikimate suggests that neither may be the physiological substrate. cf. EC 1.1.1.24, quinate/shikimate dehydrogenase (NAD+), EC 1.1.5.8, quinate/shikimate dehydrogenase (quinone), and EC 1.1.1.25, shikimate dehydrogenase (NADP+).
History
EC 1.1.1.282 created 2004, modified 2021
Pathway
ec00400  Phenylalanine, tyrosine and tryptophan biosynthesis
ec01100  Metabolic pathways
ec01110  Biosynthesis of secondary metabolites
Orthology
K05887  quinate/shikimate dehydrogenase
Genes
ECOb1692(ydiB)
ECJJW1682(ydiB)
ECDECDH10B_1828(ydiB)
EBWBWG_1506(ydiB)
ECOKECMDS42_1365(ydiB)
ECEZ2720(ydiB)
ECSECs_2399(ydiB)
ECFECH74115_2408
ETWECSP_2259(ydiB)
ELXCDCO157_2233(aroE)
EOIECO111_2161(ydiB)
EOJECO26_2420(ydiB)
EOHECO103_1835(ydiB)
ECOOECRM13514_2187(aroE)
ECOHECRM13516_2092(aroE)
ESLO3K_11775
ESOO3O_13860
ESMO3M_11740
ECKEC55989_1859(ydiB)
ECGE2348C_1777(ydiB)
EOKG2583_2089(ydiB)
ELRECO55CA74_10255
ELHETEC_1725
ECWEcE24377A_1908
EUNUMNK88_2155
ECPECP_1639
ENAECNA114_1739(ydiB)
ECOSEC958_1912(ydiB)
ECVAPECO1_768(ydiB)
ECOAAPECO78_12280
ECXEcHS_A1773
ECMEcSMS35_1504
ECYECSE_1815
ECRECIAI1_1745(ydiB)
ECQECED1_1891(ydiB)
EUMECUMN_1981(ydiB)
ECTECIAI39_1366(ydiB)
EOCCE10_1966(ydiB)
EBRECB_01661(ydiB)
EBLECD_01661(ydiB)
EBEB21_01650(ydiB)
EBDECBD_1954
ECIUTI89_C1884(ydiB)
EIHECOK1_1812
ECZECS88_1742(ydiB)
ECCc2087(ydiB)
ELOEC042_1859
ELNNRG857_08475
ESEECSF_1552
ECLEcolC_1939
EKOEKO11_2083
EKFKO11_14285(ydiB)
EABECABU_c19460(ydiB)
EDHEcDH1_1950
EDJECDH1ME8569_1636(ydiB)
ELUUM146_08690
ELWECW_m1861(ydiB)
ELLWFL_09110(ydiB)
ELCi14_1909(aroE)
ELDi02_1909(aroE)
ELPP12B_c1391(aroE)
ELFLF82_2870(ydiB)
ECOLLY180_08815
ECOIECOPMV1_01791(ydiB)
ECOJP423_09035
EFEEFER_0091
EALEAKF1_ch4359c
EMAC1192_03790
ESZFEM44_23400(ydiB)
STMSTM1359(ydiB)
SEOSTM14_1650(aroE_1)
SEVSTMMW_13661
SEYSL1344_1293(aroE)
SEMSTMDT12_C13760
SEJSTMUK_1326(aroE)
SEBSTM474_1364(aroE)
SEFUMN798_1416(aroE)
SETUSTU288_03120
SETCCFSAN001921_10345
SENRSTMDT2_12921(aroE)
SENDDT104_13371(aroE)
SENICY43_06920
SEENSE451236_12665
SPQSPAB_01974
SEISPC_2371(aroE)
SECSCH_1378(ydiB)
SEHSeHA_C1490
SHBSU5_01977
SENHCFSAN002069_02210
SEEHSEEH1578_16025
SEESNSL254_A1471
SENNSN31241_24320
SEWSeSA_A1455
SEASeAg_B1813
SENSQ786_08455
SEDSeD_A1984
SEGSG1757(ydiB)
SELSPUL_1177(ydiB)
SEGASPUCDC_1177(ydiB)
SETSEN1685(ydiB)
SENAAU38_08725
SENOAU37_08730
SENVAU39_08735
SENQAU40_09735
SENLIY59_08920
SENJCFSAN001992_04800
SEECCFSAN002050_13185
SEEBSEEB0189_012740
SEEPI137_05420
SENBBN855_13970
SENEIA1_06705
SENCSEET0819_13440
SALZEOS98_12675
SFLSF1722(aroE)
SFXS1854(ydiB)
SFVSFV_1718(ydiB)
SFESFxv_1929(ydiB)
SFNSFy_2467
SFSSFyv_2522
SFTNCTC1_01868(ydiB)
SSNSSON_1462(ydiB)
SBCSbBS512_E1895
SDYSDY_1475(ydiB)
SDZAsd1617_01960
SHQA0259_12505
ENFAKI40_1900(ydiB)
KPUKP1_0890(aroE)
KPMKPHS_07900
KPPA79E_4226
KPHKPNIH24_04015
KPZKPNIH27_03835
KPVKPNIH29_04200
KPWKPNIH30_04215
KPYKPNIH31_03820
KPGKPNIH32_04220
KPCKPNIH10_04000
KPQKPR0928_04010
KPTVK055_2498(ydiB)
KPOKPN2242_02810(aroE)
KPRKPR_0998
KPJN559_4356
KPID364_00325
KPAKPNJ1_04663
KPSKPNJ2_04615
KPXPMK1_02383(aroE_2)
KPBFH42_21195
KPNEKU54_022530
KPNULI86_22370
KPNKBN49_4265
KVAKvar_4308
KPEKPK_4667
KPKA593_14775
KVDKR75_12160
KVQSP68_18840
KOXKOX_10830(aroE)
KOEA225_0875
KOYJ415_26885(aroE)
KOMHR38_09560
KOKKONIH1_04565
KOCAB185_31610
KQUAVR78_08585
EAEEAE_11160(aroE)
EARCCG31755
KQVB8P98_23360
KLLBJF97_05105
KLWDA718_23880
KARLGL98_21065
KGRJJJ10_23430
CFDCFNIH1_16775
CBRAA6J81_02970
CWECO701_11460
CYOCD187_13335
CPOTFOB25_01110(ydiB)
CFQC2U38_13295
CAMAF384_06180
CAFAL524_16140
CIFAL515_11000
CFARCI104_12065
CIRC2U53_21260
CIEAN232_19085
CPARCUC49_06605
CTELGBC03_18520(ydiB)
CITZE4Z61_03985(ydiB)
CARSE1B03_12065(ydiB)
KRDA3780_14345
SYMK6K13_13495(ydiB)
METYMRY16398_47470(aroE)
KINAB182_21355
PDZHHA33_23915
EBCC2U52_03025
EBUCUC76_11280
YAKACZ76_17775
YMADA391_12680
SFWWN53_13740
SFGAV650_09345
SERASer39006_011055
SERQCWC46_11050
DDCDd586_0792
DZCW909_03900
DDADd703_1385
BGJAWC36_00935
BIZHC231_04870(ydiB)
ERWIGN242_08045
GAPGAPWK_1231 GAPWK_2519
ORBIPMB12_03425
SUTKFG381_00155(ydiB)
SWSI6J16_03205(ydiB)
BAYRBAM_008070
BAQBACAU_0778(aroE1)
BYABANAU_0723(aroE1)
BAMPB938_03870
BQYMUS_0802(aroE)
BAMLBAM5036_0717 BAM5036_0718(aroE)
BAMARBAU_0782(ydiB)
BAMNBASU_0758(ydiB)
BAMBBAPNAU_0734(aroE1)
BAMTAJ82_04495
BAMYV529_07450
BMPNG74_00799(aroE_1)
BAOBAMF_0755(RBAM_008070)
BAZBAMTA208_03580
BQLLL3_00809
BXHBAXH7_00755
BAMIKSO_015775
BAMCU471_07900
BAMFU722_04025
BSIACWD84_18050
BAEBATR1942_01520
BVMB9C48_03965
BACIB1NLA3E_05085(aroE) B1NLA3E_05110(aroE)
BACPSB24_05875
BACBOY17_06660
BACSAUL54_06845
BACQDOE78_20610
BMQBMQ_0974(aroD)
BMDBMD_0975(aroD) BMD_3610
BMHBMWSH_4270
BMEGBG04_3263(aroE) BG04_523
BMURABE28_001845
PBUTDTO10_13715
LMOEBN418_0563
LMOBBN419_0569
LIVLIV_2223
LIIJL52_11665
LIWAX25_11860
LIAJL58_11850
LIOJL53_12350
PPYPPE_00893
PPMPPSC2_04635(ydiB1)
PPOPPM_0869(ydiB1)
PPOLX809_04280
PPQPPSQR21_009250(aroE)
PPOYRE92_07330
PTAHPL003_12385
PPEOABE82_04435
PKBB4V02_20620
PAIHASL14_07100
LCALSEI_0476
LCZLCAZH_0506
LCSLCBD_0541(aroDE)
LCELC2W_0542(aroDE)
LCWBN194_05480(aroE_2)
LCLLOCK919_0565
LPQAF91_01615
LPILBPG_02656
LPAPLBPC_0442
LCXLCA12A_2478
LZEKG087_02315(aroE)
LPJJDM1_2789(aroD3) JDM1_2790(aroD4)
LPTzj316_0126(aroD3) zj316_0127(aroD4)
LPBSH83_14495 SH83_14500
LALWBTM29_04335 BTM29_04340
LALILA20249_07595
ECASECBG_02583
EDULIU_07945
EGAAL523_01565(aroE)
ESSATZ33_04300
CDJBFC22_00735
JARG7057_00650(aroE)
CKLCKL_1014(aroE3)
CKRCKR_0918
CLSCXIVA_24360
CSBCLSA_c07000(aroE2) CLSA_c07040(aroE3)
CSQCSCA_1647
CCKCcar_06500
CDRKB9W14_11045
RUMCK1_34250
CAPREQM14_03710
OVAOBV_35430(aroE)
BFICIY_16020
RHORHOM_13075
RIXRO1_38400
RIMROI_16940
CCTCC1_23550
ROBCK5_17110 CK5_17130
BLAUDQQ01_05180
BLABEYS05_11210(aroE)
CSCIHDCHBGLK_02860(aroE)
CSHClosa_2600
ARFAR1Y2_1381
ACACEYQ97_09780 EYQ97_09810 EYQ97_10450
EHLEHLA_0534
PXVFXF36_13400
RTORTO_32440
RGNRGna_07740(aroE) RGna_17085
EREEUBREC_2850
ERTEUR_24270
ERAERE_09960
PDCCDIF630_02965(aroE2)
CDCCD196_2549(ydiB)
CDLCDR20291_2596(ydiB)
PDFCD630DERM_27080(aroE2)
ELMELI_0966
EMTCPZ25_017670
ELIMB2M23_12525
BPRSCK3_17120
FITFi14EGH31_09280
EBMSG0102_23460(aroE)
PACDEGX94_12970
TPYOX956_05370
ACTTDDD63_09275
ELEElen_2551
EGDGS424_014705
XIIAMD24_00667(ydiB)
 » show all
Reference
1  [PMID:12637497]
  Authors
Michel G, Roszak AW, Sauve V, Maclean J, Matte A, Coggins JR, Cygler M, Lapthorn AJ
  Title
Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities.
  Journal
J Biol Chem 278:19463-72 (2003)
DOI:10.1074/jbc.M300794200
  Sequence
[eco:b1692]
Reference
2  [PMID:12624088]
  Authors
Benach J, Lee I, Edstrom W, Kuzin AP, Chiang Y, Acton TB, Montelione GT, Hunt JF.
  Title
The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase.
  Journal
J Biol Chem 278:19176-82 (2003)
DOI:10.1074/jbc.M301348200
  Sequence
[eco:b1692]
Other DBs
ExplorEnz - The Enzyme Database: 1.1.1.282
IUBMB Enzyme Nomenclature: 1.1.1.282
ExPASy - ENZYME nomenclature database: 1.1.1.282
BRENDA, the Enzyme Database: 1.1.1.282
LinkDB

KEGG   REACTION: R01872
Entry
R01872                      Reaction                               
Name
L-quinate:NAD+ 3-oxidoreductase;
Quinate:NAD+ 5-oxidoreductase
Definition
Quinate + NAD+ <=> 3-Dehydroquinate + NADH + H+
Equation
Comment
3-Dehydroquinate was formerly called "5-Dehydroquinate" on old nomenclature system of numbering
Reaction class
RC00001  C00003_C00004
RC00154  C00296_C00944
Enzyme
1.1.1.24        1.1.1.282
Pathway
rn00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rn01100  Metabolic pathways
Orthology
K05887  quinate/shikimate dehydrogenase [EC:1.1.1.282]
K09484  quinate dehydrogenase [EC:1.1.1.24]
Other DBs
RHEA: 22367
LinkDB

KEGG   REACTION: R06846
Entry
R06846                      Reaction                               
Name
L-quinate:NADP+ 3-oxidoreductase
Definition
Quinate + NADP+ <=> 3-Dehydroquinate + NADPH + H+
Equation
Reaction class
RC00001  C00005_C00006
RC00154  C00296_C00944
Enzyme
Pathway
rn00400  Phenylalanine, tyrosine and tryptophan biosynthesis
rn01100  Metabolic pathways
Orthology
K05887  quinate/shikimate dehydrogenase [EC:1.1.1.282]
Other DBs
RHEA: 18428
LinkDB

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