KEGG   MODULE: M00046
Entry
M00046            Pathway   Module                                 
Name
Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
Definition
(K00207,K17722+K17723) K01464 (K01431,K06016)
Diagram
M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate
M00046

Class
Pathway modules; Nucleotide metabolism; Pyrimidine metabolism
Pathway
map00240  Pyrimidine metabolism
map00410  beta-Alanine metabolism
map00770  Pantothenate and CoA biosynthesis
map01100  Metabolic pathways
Orthology
K00207  
dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] [RN:R00978 R01415]
dihydropyrimidine dehydrogenase (NAD+) [EC:1.3.1.1] [RN:R00977 R11026]
K01464  
dihydropyrimidinase [EC:3.5.2.2] [RN:R02269 R03055]
beta-ureidopropionase [EC:3.5.1.6] [RN:R00905 R04666]
Complete
hsa  Homo sapiens (human)
ptr  Pan troglodytes (chimpanzee)
pps  Pan paniscus (bonobo)
ggo  Gorilla gorilla gorilla (western lowland gorilla)
pon  Pongo abelii (Sumatran orangutan)
ppyg  Pongo pygmaeus (Bornean orangutan)
nle  Nomascus leucogenys (northern white-cheeked gibbon)
ssyn  Symphalangus syndactylus (siamang)
mcc  Macaca mulatta (rhesus monkey)
mcf  Macaca fascicularis (crab-eating macaque)
mthb  Macaca thibetana thibetana (Pere David's macaque)
mni  Macaca nemestrina (pig-tailed macaque)
csab  Chlorocebus sabaeus (green monkey)
caty  Cercocebus atys (sooty mangabey)
panu  Papio anubis (olive baboon)
tge  Theropithecus gelada (gelada)
mleu  Mandrillus leucophaeus (drill)
rro  Rhinopithecus roxellana (golden snub-nosed monkey)
rbb  Rhinopithecus bieti (black snub-nosed monkey)
tfn  Trachypithecus francoisi (Francois's langur)
pteh  Piliocolobus tephrosceles (Ugandan red Colobus)
cang  Colobus angolensis palliatus (Angola colobus)
cjc  Callithrix jacchus (white-tufted-ear marmoset)
sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
cimi  Cebus imitator (Panamanian white-faced capuchin)
anan  Aotus nancymaae (Ma's night monkey)
csyr  Carlito syrichta (Philippine tarsier)
mmur  Microcebus murinus (gray mouse lemur)
lcat  Lemur catta (Ring-tailed lemur)
eruf  Eulemur rufifrons (Bennett's brown lemur)
oga  Otolemur garnettii (small-eared galago)
mmu  Mus musculus (house mouse)
mcal  Mus caroli (Ryukyu mouse)
mpah  Mus pahari (shrew mouse)
rno  Rattus norvegicus (rat)
mcoc  Mastomys coucha (southern multimammate mouse)
anu  Arvicanthis niloticus (African grass rat)
asyl  Apodemus sylvaticus (European woodmouse)
mun  Meriones unguiculatus (Mongolian gerbil)
cge  Cricetulus griseus (Chinese hamster)
maua  Mesocricetus auratus (golden hamster)
prob  Phodopus roborovskii (desert hamster)
pleu  Peromyscus leucopus (white-footed mouse)
pmav  Peromyscus maniculatus bairdii (prairie deer mouse)
morg  Microtus oregoni (creeping vole)
mfot  Alexandromys fortis (reed vole)
aamp  Arvicola amphibius (Eurasian water vole)
cnl  Chionomys nivalis (European snow vole)
ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
hgl  Heterocephalus glaber (naked mole-rat)
cpoc  Cavia porcellus (domestic guinea pig)
ccan  Castor canadensis (American beaver)
dord  Dipodomys ordii (Ord's kangaroo rat)
dsp  Dipodomys spectabilis (banner-tailed kangaroo rat)
dmer  Dipodomys merriami (Merriam's kangaroo rat)
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
ncar  Sciurus carolinensis (gray squirrel)
mmma  Marmota marmota marmota (Alpine marmot)
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
ocu  Oryctolagus cuniculus (rabbit)
opi  Ochotona princeps (American pika)
ocz  Ochotona curzoniae (black-lipped pika)
tup  Tupaia chinensis (Chinese tree shrew)
cfa  Canis lupus familiaris (dog)
clud  Canis lupus dingo (dingo)
vvp  Vulpes vulpes (red fox)
vlg  Vulpes lagopus (Arctic fox)
npo  Nyctereutes procyonoides (raccoon dog)
aml  Ailuropoda melanoleuca (giant panda)
umr  Ursus maritimus (polar bear)
uah  Ursus arctos (brown bear)
uar  Ursus americanus (American black bear)
elk  Enhydra lutris kenyoni (northern sea otter)
llv  Lutra lutra (Eurasian river otter)
mpuf  Mustela putorius furo (domestic ferret)
mnp  Mustela nigripes (black-footed ferret)
mlk  Mustela lutreola (European mink)
nvs  Neogale vison (American mink)
oro  Odobenus rosmarus divergens (Pacific walrus)
eju  Eumetopias jubatus (Steller sea lion)
zca  Zalophus californianus (California sea lion)
mlx  Mirounga leonina (Southern elephant seal)
nsu  Neomonachus schauinslandi (Hawaiian monk seal)
lww  Leptonychotes weddellii (Weddell seal)
fca  Felis catus (domestic cat)
pyu  Herpailurus yagouaroundi (jaguarundi)
pcoo  Puma concolor (puma)
pbg  Prionailurus bengalensis (leopard cat)
pviv  Prionailurus viverrinus (fishing cat)
lruf  Lynx rufus (bobcat)
lgf  Leopardus geoffroyi (Geoffroy's cat)
aju  Acinonyx jubatus (cheetah)
ppad  Panthera pardus (leopard)
puc  Panthera uncia (snow leopard)
plez  Panthera leo (lion)
hhv  Hyaena hyaena (striped hyena)
bta  Bos taurus (cow)
bom  Bos mutus (wild yak)
biu  Bos indicus (zebu cattle)
bbub  Bubalus bubalis (water buffalo)
bke  Bubalus kerabau (carabao)
chx  Capra hircus (goat)
oas  Ovis aries (sheep)
btax  Budorcas taxicolor (takin)
csum  Capricornis sumatraensis (Sumatran serow)
oda  Oryx dammah (scimitar-horned oryx)
ccad  Cervus canadensis (wapiti)
mree  Muntiacus reevesi (Reeves' muntjac)
ovr  Odocoileus virginianus (white-tailed deer)
mbez  Moschus berezovskii (Chinese forest musk deer)
ssc  Sus scrofa (pig)
cfr  Camelus ferus (Wild Bactrian camel)
cbai  Camelus bactrianus (Bactrian camel)
cdk  Camelus dromedarius (Arabian camel)
vpc  Vicugna pacos (alpaca)
bacu  Balaenoptera acutorostrata scammoni (minke whale)
bmus  Balaenoptera musculus (blue whale)
lve  Lipotes vexillifer (Yangtze River dolphin)
oor  Orcinus orca (killer whale)
lalb  Lagenorhynchus albirostris (white-beaked dolphin)
gmf  Globicephala melas (long-finned pilot whale)
ddp  Delphinus delphis (saddleback dolphin)
dle  Delphinapterus leucas (beluga whale)
pcad  Physeter macrocephalus (sperm whale)
psiu  Phocoena sinus (vaquita)
nasi  Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
ecb  Equus caballus (horse)
epz  Equus przewalskii (Przewalski's horse)
eai  Equus asinus (ass)
myb  Myotis brandtii (Brandt's bat)
myd  Myotis davidii (David's myotis)
mmyo  Myotis myotis (greater mouse-eared bat)
mlf  Myotis lucifugus (little brown bat)
mdt  Myotis daubentonii (Daubenton's bat)
myum  Myotis yumanensis (Yuma myotis)
pkl  Pipistrellus kuhlii (Kuhl's pipistrelle)
efus  Eptesicus fuscus (big brown bat)
mna  Miniopterus natalensis (Natal long-fingered bat)
dro  Desmodus rotundus (common vampire bat)
shon  Sturnira hondurensis
ajm  Artibeus jamaicensis (Jamaican fruit-eating bat)
pdic  Phyllostomus discolor (pale spear-nosed bat)
phas  Phyllostomus hastatus (greater spear-nosed bat)
mmf  Molossus molossus (Pallas's mastiff bat)
ppam  Pteronotus mesoamericanus (Parnell's mustached bat)
hai  Hipposideros armiger (great roundleaf bat)
rfq  Rhinolophus ferrumequinum (greater horseshoe bat)
pale  Pteropus alecto (black flying fox)
pgig  Pteropus vampyrus (Indian flying fox)
pvp  Pteropus vampyrus (large flying fox)
ray  Rousettus aegyptiacus (Egyptian rousette)
mjv  Manis javanica (Malayan pangolin)
tod  Talpa occidentalis (Iberian mole)
sara  Sorex araneus (European shrew)
sfum  Sorex fumeus (smoky shrew)
setr  Suncus etruscus (white-toothed pygmy shrew)
lav  Loxodonta africana (African savanna elephant)
tmu  Trichechus manatus latirostris (Florida manatee)
etf  Echinops telfairi (small Madagascar hedgehog)
dnm  Dasypus novemcinctus (nine-banded armadillo)
mdo  Monodelphis domestica (gray short-tailed opossum)
afz  Antechinus flavipes (yellow-footed antechinus)
pcw  Phascolarctos cinereus (koala)
tvp  Trichosurus vulpecula (common brushtail)
pbrv  Petaurus breviceps papuanus (sugar glider)
mlao  Macrotis lagotis (bilby)
oaa  Ornithorhynchus anatinus (platypus)
tacu  Tachyglossus aculeatus (Australian echidna)
gga  Gallus gallus (chicken)
pcoc  Phasianus colchicus (Ring-necked pheasant)
mgp  Meleagris gallopavo (turkey)
cjo  Coturnix japonica (Japanese quail)
tpai  Tympanuchus pallidicinctus (lesser prairie-chicken)
lmut  Lagopus muta (rock ptarmigan)
nmel  Numida meleagris (helmeted guineafowl)
apla  Anas platyrhynchos (mallard)
aacu  Anas acuta (northern pintail)
acyg  Anser cygnoides (swan goose)
cata  Cygnus atratus (black swan)
aful  Aythya fuligula (tufted duck)
tgu  Taeniopygia guttata (zebra finch)
lsr  Lonchura striata (white-rumped munia)
scan  Serinus canaria (common canary)
pmoa  Passer montanus (Eurasian tree sparrow)
otc  Onychostruthus taczanowskii (white-rumped snowfinch)
pruf  Pyrgilauda ruficollis (rufous-necked snowfinch)
atrc  Agelaius tricolor (tricolored blackbird)
gfr  Geospiza fortis (medium ground-finch)
fab  Ficedula albicollis (collared flycatcher)
oma  Oenanthe melanoleuca (Eastern black-eared wheatear)
phi  Pseudopodoces humilis (Tibetan ground-tit)
pmaj  Parus major (Great Tit)
ccae  Cyanistes caeruleus (blue tit)
ccw  Corvus cornix (hooded crow)
cbrc  Corvus brachyrhynchos (American crow)
acoe  Aphelocoma coerulescens (scrub jay)
etl  Empidonax traillii (willow flycatcher)
zab  Zonotrichia albicollis (white-throated sparrow)
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
achl  Acanthisitta chloris (rifleman)
svg  Sturnus vulgaris (common starling)
mmea  Malurus melanocephalus (red-backed fairy wren)
hrt  Hirundo rustica (Barn swallow)
sati  Sylvia atricapilla (blackcap)
cfai  Chamaea fasciata (wrentit)
ccic  Cinclus cinclus (white-throated dipper)
fpg  Falco peregrinus (peregrine falcon)
fch  Falco cherrug (Saker falcon)
ccri  Cariama cristata (Red-legged seriema)
nnt  Nestor notabilis (Kea)
shab  Strigops habroptila (Kakapo)
acun  Athene cunicularia (burrowing owl)
sura  Strix uralensis (Ural owl)
tala  Tyto alba (Barn owl)
achc  Aquila chrysaetos chrysaetos (golden eagle)
hald  Haliaeetus albicilla (white-tailed eagle)
hle  Haliaeetus leucocephalus (bald eagle)
agen  Astur gentilis (Northern goshawk)
hhar  Harpia harpyja (harpy eagle)
bbut  Buteo buteo (common buzzard)
gcl  Gymnogyps californianus (California condor)
csti  Colius striatus (speckled mousebird)
ldi  Leptosomus discolor (cuckoo roller)
mnb  Merops nubicus (carmine bee-eater)
dpub  Dryobates pubescens (Downy woodpecker)
ppus  Pogoniulus pusillus (red-fronted tinkerbird)
avit  Apaloderma vittatum (bar-tailed trogon)
egz  Egretta garzetta (little egret)
nni  Nipponia nippon (crested ibis)
padl  Pygoscelis adeliae (Adelie penguin)
afor  Aptenodytes forsteri (emperor penguin)
cbor  Calonectris borealis (Cory's shearwater)
cboy  Ciconia boyciana (Oriental stork)
mame  Mycteria americana (wood stork)
clv  Columba livia (rock pigeon)
cnic  Caloenas nicobarica (Nicobar pigeon)
cuca  Cuculus canorus (common cuckoo)
oha  Opisthocomus hoazin (hoatzin)
acar  Antrostomus carolinensis (chuck-will's-widow)
cpea  Chaetura pelagica (chimney swift)
cvf  Charadrius vociferus (killdeer)
rtd  Rissa tridactyla (black-legged kittiwake)
crid  Chroicocephalus ridibundus (black-headed gull)
lmic  Larus michahellis (yellow-legged gull)
narq  Numenius arquata (Eurasian curlew)
aam  Apteryx mantelli mantelli (North Island brown kiwi)
arow  Apteryx rowi (Okarito brown kiwi)
npd  Nothoprocta perdicaria (Chilean tinamou)
tgt  Tinamus guttatus (white-throated tinamou)
dne  Dromaius novaehollandiae (emu)
scam  Struthio camelus australis (South African ostrich)
asn  Alligator sinensis (Chinese alligator)
amj  Alligator mississippiensis (American alligator)
cpoo  Crocodylus porosus (Australian saltwater crocodile)
ggn  Gavialis gangeticus (Gharial)
pss  Pelodiscus sinensis (Chinese soft-shelled turtle)
ciz  Carettochelys insculpta (pitted-shelled turtle)
cmy  Chelonia mydas (green sea turtle)
ccay  Caretta caretta (Loggerhead turtle)
lkp  Lepidochelys kempii (Atlantic ridley)
nds  Natator depressus (flatback sea turtle)
dcc  Dermochelys coriacea (leatherback sea turtle)
cpic  Chrysemys picta (western painted turtle)
tst  Trachemys scripta elegans (red-eared slider)
cabi  Chelonoidis abingdonii (Abingdon island giant tortoise)
mrv  Mauremys reevesii (Reeves's turtle)
acs  Anolis carolinensis (green anole)
asao  Anolis sagrei ordinatus (Brown anole)
pvt  Pogona vitticeps (central bearded dragon)
pbi  Python bivittatus (Burmese python)
pmur  Protobothrops mucrosquamatus (Taiwan habu)
ctig  Crotalus tigris (Tiger rattlesnake)
tsr  Thamnophis sirtalis (common garter snake)
pgut  Pantherophis guttatus (corn snake)
pcae  Pituophis catenifer annectens (San Diego gophersnake)
apri  Ahaetulla prasina (Asian vine snake)
nss  Notechis scutatus (mainland tiger snake)
vko  Varanus komodoensis (Komodo dragon)
pmua  Podarcis muralis (common wall lizard)
praf  Podarcis raffonei (Aeolian wall lizard)
zvi  Zootoca vivipara (common lizard)
hcg  Hemicordylus capensis (graceful crag lizard)
gja  Gekko japonicus (Schlegel's Japanese gecko)
stow  Sphaerodactylus townsendi (Townsend's least gecko)
emc  Eublepharis macularius (Leopard gecko)
xla  Xenopus laevis (African clawed frog)
xtr  Xenopus tropicalis (tropical clawed frog)
npr  Nanorana parkeri (Xizang Plateau frog)
rtem  Rana temporaria (common frog)
acat  Aquarana catesbeiana (American bullfrog)
pads  Pyxicephalus adspersus (African bullfrog)
bbuf  Bufo bufo (common toad)
bgar  Bufo gargarizans (Asiatic toad)
dtc  Dendrobates tinctorius (dyeing poison frog)
pwl  Pleurodeles waltl (Iberian ribbed newt)
muo  Microcaecilia unicolor
gsh  Geotrypetes seraphini (Gaboon caecilian)
dre  Danio rerio (zebrafish)
srx  Sinocyclocheilus rhinocerous
sanh  Sinocyclocheilus anshuiensis
sgh  Sinocyclocheilus grahami (golden-line barbel)
ccar  Cyprinus carpio (common carp)
caua  Carassius auratus (goldfish)
cgib  Carassius gibelio (silver crucian carp)
ptet  Puntigrus tetrazona (Sumatra barb)
lroh  Labeo rohita (rohu)
grf  Garra rufa (doctor fish)
omc  Onychostoma macrolepis
pprm  Pimephales promelas (fathead minnow)
mamb  Megalobrama amblycephala (Wuchang bream)
cide  Ctenopharyngodon idella (grass carp)
cery  Chanodichthys erythropterus (predatory carp)
masi  Myxocyprinus asiaticus (Chinese sucker)
tros  Triplophysa rosa
tdw  Triplophysa dalaica
manu  Misgurnus anguillicaudatus (oriental weatherfish)
pdab  Paramisgurnus dabryanus (large-scale loach)
ipu  Ictalurus punctatus (channel catfish)
ifu  Ictalurus furcatus (blue catfish)
phyp  Pangasianodon hypophthalmus (striped catfish)
smeo  Silurus meridionalis (southern catfish)
tfd  Tachysurus fulvidraco (yellow catfish)
tvc  Tachysurus vachellii
cgar  Clarias gariepinus (North African catfish)
ngra  Neoarius graeffei (lesser salmon catfish)
trn  Trichomycterus rosablanca
amex  Astyanax mexicanus (Mexican tetra)
cmao  Colossoma macropomum (tambaqui)
eee  Electrophorus electricus (electric eel)
char  Clupea harengus (Atlantic herring)
spil  Sardina pilchardus (sardine)
asad  Alosa sapidissima (American shad)
tru  Takifugu rubripes (torafugu)
tfs  Takifugu flavidus (sansaifugu)
tng  Tetraodon nigroviridis (spotted green pufferfish)
lco  Larimichthys crocea (large yellow croaker)
ncc  Notothenia coriiceps (black rockcod)
tben  Trematomus bernacchii (emerald rockcod)
pgeo  Pseudochaenichthys georgianus (South Georgia icefish)
gacu  Gymnodraco acuticeps
emac  Eleginops maclovinus (Patagonian blennie)
ely  Epinephelus lanceolatus (giant grouper)
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
plep  Plectropomus leopardus (leopard coralgrouper)
sluc  Sander lucioperca (pikeperch)
ecra  Etheostoma cragini (Arkansas darter)
esp  Etheostoma spectabile (orangethroat darter)
pflv  Perca flavescens (yellow perch)
gat  Gasterosteus aculeatus (three-spined stickleback)
ppug  Pungitius pungitius (ninespine stickleback)
afb  Anoplopoma fimbria (sablefish)
clum  Cyclopterus lumpus (lumpfish)
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
cana  Clinocottus analis (woolly sculpin)
msam  Micropterus salmoides (largemouth bass)
schu  Siniperca chuatsi (mandarin fish)
spul  Semicossyphus pulcher (California sheephead)
lmix  Labrus mixtus (cuckoo wrasse)
htc  Halichoeres trimaculatus (threespot wrasse)
alat  Acanthopagrus latus (yellowfin seabream)
astr  Antennarius striatus (striated frogfish)
mze  Maylandia zebra (zebra mbuna)
onl  Oreochromis niloticus (Nile tilapia)
oau  Oreochromis aureus (blue tilapia)
ola  Oryzias latipes (Japanese medaka)
oml  Oryzias melastigma (Indian medaka)
csai  Cololabis saira (Pacific saury)
xma  Xiphophorus maculatus (southern platyfish)
xco  Xiphophorus couchianus (Monterrey platyfish)
xhe  Xiphophorus hellerii (green swordtail)
pret  Poecilia reticulata (guppy)
pfor  Poecilia formosa (Amazon molly)
plai  Poecilia latipinna (sailfin molly)
pmei  Poecilia mexicana (shortfin molly)
gaf  Gambusia affinis (western mosquitofish)
pprl  Poeciliopsis prolifica (blackstripe livebearer)
cvg  Cyprinodon variegatus (sheepshead minnow)
ctul  Cyprinodon tularosa (White Sands pupfish)
gmu  Girardinichthys multiradiatus (darkedged splitfin)
nfu  Nothobranchius furzeri (turquoise killifish)
kmr  Kryptolebias marmoratus (mangrove rivulus)
alim  Austrofundulus limnaeus (annual killifish)
nwh  Nematolebias whitei (Rio pearlfish)
aoce  Amphiprion ocellaris (clown anemonefish)
eja  Embiotoca jacksoni (black perch)
bfre  Brachyistius frenatus (kelp perch)
mcep  Mugil cephalus (flathead mullet)
csem  Cynoglossus semilaevis (tongue sole)
pov  Paralichthys olivaceus (Japanese flounder)
ssen  Solea senegalensis (Senegalese sole)
ssoe  Solea solea (common sole)
hhip  Hippoglossus hippoglossus (Atlantic halibut)
hsp  Hippoglossus stenolepis (Pacific halibut)
pplt  Pleuronectes platessa (European plaice)
smau  Scophthalmus maximus (turbot)
lcf  Lates calcarifer (barramundi perch)
sdu  Seriola dumerili (greater amberjack)
slal  Seriola lalandi dorsalis (Yellowtail amberjack)
xgl  Xiphias gladius (swordfish)
hcq  Hippocampus comes (tiger tail seahorse)
sscv  Syngnathus scovelli (Gulf pipefish)
sbia  Syngnathoides biaculeatus (alligator pipefish)
pee  Phycodurus eques (leafy seadragon)
ptao  Phyllopteryx taeniolatus (common seadragon)
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
eny  Eucyclogobius newberryi (tidewater goby)
malb  Monopterus albus (swamp eel)
bspl  Betta splendens (Siamese fighting fish)
sjo  Scomber japonicus (chub mackerel)
ssco  Scomber scombrus (Atlantic mackerel)
tty  Thunnus thynnus (Atlantic bluefin tuna)
gmh  Gadus morhua (Atlantic cod)
sasa  Salmo salar (Atlantic salmon)
stru  Salmo trutta (river trout)
otw  Oncorhynchus tshawytscha (Chinook salmon)
omy  Oncorhynchus mykiss (rainbow trout)
ogo  Oncorhynchus gorbuscha (pink salmon)
one  Oncorhynchus nerka (sockeye salmon)
oki  Oncorhynchus kisutch (coho salmon)
oke  Oncorhynchus keta (chum salmon)
omm  Oncorhynchus masou masou (cherry salmon)
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
salp  Salvelinus sp. IW2-2015 (Arctic char)
snh  Salvelinus namaycush (lake trout)
sfon  Salvelinus fontinalis (brook trout)
cclu  Coregonus clupeaformis (lake whitefish)
els  Esox lucius (northern pike)
oep  Osmerus eperlanus (European smelt)
sfm  Scleropages formosus (Asian bonytongue)
pki  Paramormyrops kingsleyae
aang  Anguilla anguilla (European eel)
arot  Anguilla rostrata (American eel)
ccog  Conger conger (European conger)
loc  Lepisosteus oculatus (spotted gar)
pspa  Polyodon spathula (Mississippi paddlefish)
arut  Acipenser ruthenus (sterlet)
psex  Polypterus senegalus (gray bichir)
lcm  Latimeria chalumnae (coelacanth)
cmk  Callorhinchus milii (elephant shark)
rtp  Rhincodon typus (whale shark)
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
cpun  Chiloscyllium punctatum (brownbanded bambooshark)
hoc  Hemiscyllium ocellatum (epaulette shark)
scau  Scyliorhinus canicula (smaller spotted catshark)
leri  Leucoraja erinaceus (little skate)
haka  Hemitrygon akajei (red stingray)
pmrn  Petromyzon marinus (sea lamprey)
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
bfo  Branchiostoma floridae (Florida lancelet)
bbel  Branchiostoma belcheri (Belcher's lancelet)
cin  Ciona intestinalis (yellow sea squirt)
sclv  Styela clava (leathery sea squirt)
clep  Clavelina lepadiformis (light-bulb sea squirt)
spu  Strongylocentrotus purpuratus (purple sea urchin)
lpic  Lytechinus pictus (painted urchin)
lvg  Lytechinus variegatus (green sea urchin)
ajj  Apostichopus japonicus (Japanese sea cucumber)
aplc  Acanthaster planci (crown-of-thorns starfish)
arun  Luidia clathrata (European starfish)
aamu  Asterias amurensis (Northern Pacific seastar)
afil  Amphiura filiformis
ajc  Anneissia japonica (feather star)
sko  Saccoglossus kowalevskii (acorn worm)
pfll  Ptychodera flava
dme  Drosophila melanogaster (fruit fly)
der  Drosophila erecta
dse  Drosophila sechellia
dsi  Drosophila simulans
dya  Drosophila yakuba
dan  Drosophila ananassae
dsr  Drosophila serrata
dpo  Drosophila pseudoobscura
dpe  Drosophila persimilis
dmn  Drosophila miranda
dwi  Drosophila willistoni
dgr  Drosophila grimshawi
dmo  Drosophila mojavensis
daz  Drosophila arizonae
dnv  Drosophila navojoa
dhe  Drosophila hydei
dvi  Drosophila virilis
ccat  Ceratitis capitata (Mediterranean fruit fly)
bod  Bactrocera oleae (olive fruit fly)
bdr  Bactrocera dorsalis (oriental fruit fly)
rze  Rhagoletis zephyria (snowberry fruit fly)
aoq  Anastrepha obliqua (West Indian fruit fly)
alud  Anastrepha ludens (Mexican fruit fly)
tda  Teleopsis dalmanni (Malaysian stalk-eyed fly)
mde  Musca domestica (house fly)
scac  Stomoxys calcitrans (stable fly)
lcq  Lucilia cuprina (Australian sheep blowfly)
lsq  Lucilia sericata (common green bottle fly)
cvj  Calliphora vicina (urban bluebottle blowfly)
gfs  Glossina fuscipes (tsetse fly)
ecoe  Eupeodes corollae
clon  Condylostylus longicornis
his  Hermetia illucens (black soldier fly)
aga  Anopheles gambiae (malaria mosquito)
acoz  Anopheles coluzzii
aara  Anopheles arabiensis
amer  Anopheles merus
aste  Anopheles stephensi (Asian malaria mosquito)
amap  Anopheles maculipalpis
afun  Anopheles funestus (African malaria mosquito)
amou  Anopheles moucheti
amrs  Anopheles marshallii
aali  Anopheles albimanus
adar  Anopheles darlingi (American malaria mosquito)
acos  Anopheles coustani
aag  Aedes aegypti (yellow fever mosquito)
aalb  Aedes albopictus (Asian tiger mosquito)
asua  Armigeres subalbatus
cqu  Culex quinquefasciatus (southern house mosquito)
cpii  Culex pipiens pallens (northern house mosquito)
cbri  Culicoides brevitarsis
cns  Contarinia nasturtii (swede midge)
bcoo  Bradysia coprophila
lll  Lutzomyia longipalpis
ame  Apis mellifera (honey bee)
acer  Apis cerana (Asiatic honeybee)
alab  Apis laboriosa (Himalayan honeybee)
adr  Apis dorsata (giant honeybee)
aflr  Apis florea (little honeybee)
bim  Bombus impatiens (common eastern bumble bee)
bbif  Bombus bifarius (two-form bumblebee)
bvk  Bombus vosnesenskii (yellow-faced bumblebee)
bvan  Bombus vancouverensis nearcticus
bhun  Bombus huntii (Hunt bumble bee)
bter  Bombus terrestris (buff-tailed bumblebee)
baff  Bombus affinis (rusty patched bumble bee)
bpyo  Bombus pyrosoma
bpas  Bombus pascuorum (common carder bee)
fvi  Frieseomelitta varia
ccal  Ceratina calcarata (carpenter bee)
obb  Osmia bicornis bicornis (red mason bee)
olg  Osmia lignaria (orchard mason bee)
nmea  Nomia melanderi (Alkali bee)
cgig  Colletes gigas
soc  Solenopsis invicta (red fire ant)
mpha  Monomorium pharaonis (pharaoh ant)
aec  Acromyrmex echinatior (Panamanian leafcutter ant)
acep  Atta cephalotes (leaf cutting ant)
acoc  Atta colombica
mzt  Mycetomoellerius zeteki
ccoa  Cyphomyrmex costatus
tcz  Trachymyrmex cornetzi
tsep  Trachymyrmex septentrionalis
pbar  Pogonomyrmex barbatus (red harvester ant)
vem  Vollenhovia emeryi
cobs  Cardiocondyla obscurior
tln  Temnothorax longispinosus
hst  Harpegnathos saltator (Jerdon's jumping ant)
dqu  Dinoponera quadriceps
cfo  Camponotus floridanus (Florida carpenter ant)
fex  Formica exsecta (narrow-headed ant)
pmec  Polyergus mexicanus
lhu  Linepithema humile (Argentine ant)
pgc  Pseudomyrmex gracilis (graceful twig ant)
obo  Ooceraea biroi (clonal raider ant)
pcf  Polistes canadensis
pfuc  Polistes fuscatus (common paper wasp)
vcrb  Vespa crabro (European hornet)
vve  Vespa velutina (Asian hornet)
nvi  Nasonia vitripennis (jewel wasp)
csol  Ceratosolen solmsi marchali (fig wasp)
tpre  Trichogramma pretiosum
lht  Leptopilina heterotoma
lbd  Leptopilina boulardi
mdl  Microplitis demolitor
cglo  Cotesia glomerata
fas  Fopius arisanus
dam  Diachasma alloeum
agif  Aphidius gifuensis
cins  Chelonus insularis
vcan  Venturia canescens
ccin  Cephus cinctus (wheat stem sawfly)
dsm  Diprion similis
npt  Neodiprion pinetum (white pine sawfly)
nfb  Neodiprion fabricii
nlo  Neodiprion lecontei (redheaded pine sawfly)
nvg  Neodiprion virginianus
aroa  Athalia rosae (coleseed sawfly)
tca  Tribolium castaneum (red flour beetle)
tmol  Tenebrio molitor (yellow mealworm)
dpa  Dendroctonus ponderosae (mountain pine beetle)
esim  Euwallacea similis
efor  Euwallacea fornicatus (polyphagous shot-hole borer)
soy  Sitophilus oryzae (rice weevil)
rfg  Rhynchophorus ferrugineus (red palm weevil)
agrg  Anthonomus grandis grandis (boll weevil)
atd  Aethina tumida (small hive beetle)
cset  Coccinella septempunctata (seven-spotted ladybird)
haxr  Harmonia axyridis (harlequin ladybird)
agb  Anoplophora glabripennis (Asian longhorned beetle)
ldc  Leptinotarsa decemlineata (Colorado potato beetle)
dvv  Diabrotica virgifera virgifera (western corn rootworm)
nvl  Nicrophorus vespilloides (burying beetle)
apln  Agrilus planipennis (emerald ash borer)
ppyr  Photinus pyralis (common eastern firefly)
bmor  Bombyx mori (domestic silkworm)
bman  Bombyx mandarina (wild silkworm)
msex  Manduca sexta (tobacco hornworm)
dpl  Danaus plexippus (monarch butterfly)
bany  Bicyclus anynana (squinting bush brown)
mju  Maniola jurtina (meadow brown)
niq  Nymphalis io (European peacock)
vcd  Vanessa cardui (painted lady)
mcix  Melitaea cinxia (Glanville fritillary)
pmac  Papilio machaon (common yellow swallowtail)
ppot  Papilio polytes (common Mormon)
pxu  Papilio xuthus (Asian swallowtail)
bphi  Battus philenor (pipe-vine swallowtail)
prap  Pieris rapae (cabbage white)
pbx  Pieris brassicae (large cabbage white)
pnap  Pieris napi (green-veined white)
zce  Zerene cesonia (dogface butterfly)
ccrc  Colias croceus (clouded yellow)
lsin  Leptidea sinapis (Wood White)
aage  Aricia agestis (brown argus)
haw  Helicoverpa armigera (cotton bollworm)
hze  Helicoverpa zea (corn earworm)
tnl  Trichoplusia ni (cabbage looper)
sliu  Spodoptera litura (tobacco cutworm)
ofu  Ostrinia furnacalis (Asian corn borer)
onu  Ostrinia nubilalis (European corn borer)
atra  Amyelois transitella (navel orangeworm)
gmw  Galleria mellonella (greater wax moth)
pxy  Plutella xylostella (diamondback moth)
pgw  Pectinophora gossypiella (pink bollworm)
lgly  Leguminivora glycinivorella (soybean pod borer)
cstb  Cydia strobilella (spruce-seed moth)
cfum  Choristoneura fumiferana (eastern spruce budworm)
cfel  Ctenocephalides felis (cat flea)
ccrn  Chrysoperla carnea
api  Acyrthosiphon pisum (pea aphid)
dnx  Diuraphis noxia (Russian wheat aphid)
ags  Aphis gossypii (cotton aphid)
rmd  Rhopalosiphum maidis (corn leaf aphid)
acoo  Adelges cooleyi (spruce gall adelgid)
dvt  Daktulosphaira vitifoliae (grape phylloxera)
btab  Bemisia tabaci (sweet potato whitefly)
dci  Diaphorina citri (Asian citrus psyllid)
clec  Cimex lectularius (bed bug)
hhal  Halyomorpha halys (brown marmorated stink bug)
nlu  Nilaparvata lugens (brown planthopper)
lda  Lycorma delicatula (spotted lanternfly)
hvi  Homalodisca vitripennis (glassy-winged sharpshooter)
mqu  Macrosteles quadrilineatus (aster leafhopper)
phu  Pediculus humanus corporis (human body louse)
foc  Frankliniella occidentalis (western flower thrips)
tpal  Thrips palmi (melon thrips)
zne  Zootermopsis nevadensis (dampwood termite)
csec  Cryptotermes secundus (drywood termite)
pame  Periplaneta americana (American cockroach)
sgre  Schistocerca gregaria (desert locust)
bror  Bacillus rossius redtenbacheri
iel  Ischnura elegans (blue-tailed damselfly)
hamr  Hetaerina americana (American ruby spot damselfly)
fcd  Folsomia candida
dpx  Daphnia pulex (common water flea)
dmk  Daphnia magna (water flea)
dpz  Daphnia pulicaria
afra  Artemia franciscana
pvm  Penaeus vannamei (Pacific white shrimp)
pja  Penaeus japonicus (kuruma prawn)
pchn  Penaeus chinensis (fleshy prawn)
pmoo  Penaeus monodon (black tiger shrimp)
hame  Homarus americanus (American lobster)
pcla  Procambarus clarkii (red swamp crayfish)
cqd  Cherax quadricarinatus (Australian red claw crayfish)
ptru  Portunus trituberculatus (swimming crab)
esn  Eriocheir sinensis (Chinese mitten crab)
mnz  Macrobrachium nipponense (oriental river prawn)
mrj  Macrobrachium rosenbergii (giant freshwater prawn)
porn  Panulirus ornatus (ornate spiny lobster)
hazt  Hyalella azteca
eaf  Eurytemora carolleeae
lsm  Lepeophtheirus salmonis (salmon louse)
tcf  Tigriopus californicus (tidepool copepod)
ppoi  Pollicipes pollicipes (gooseneck barnacle)
isc  Ixodes scapularis (black-legged tick)
dsv  Dermacentor silvarum
dalb  Dermacentor albipictus (winter tick)
rsan  Rhipicephalus sanguineus (brown dog tick)
rmp  Rhipicephalus microplus (southern cattle tick)
oti  Ornithodoros turicata (relapsing fever tick)
vde  Varroa destructor (honeybee mite)
vja  Varroa jacobsoni
goe  Galendromus occidentalis (western predatory mite)
tut  Tetranychus urticae (two-spotted spider mite)
dfr  Dermatophagoides farinae (American house dust mite)
cscu  Centruroides sculpturatus (bark scorpion)
cvs  Centruroides vittatus (striped bark scorpion)
abru  Argiope bruennichi (wasp spider)
udv  Uloborus diversus
sdm  Stegodyphus dumicola
lpol  Limulus polyphemus (Atlantic horseshoe crab)
pmeo  Paramacrobiotus metropolitanus
cel  Caenorhabditis elegans (nematode)
cbr  Caenorhabditis briggsae (nematode)
crq  Caenorhabditis remanei (nematode)
nai  Necator americanus (New World hookworm)
hro  Helobdella robusta
lgi  Lottia gigantea (owl limpet)
pvul  Patella vulgata (common limpet)
pcan  Pomacea canaliculata (golden apple snail)
lsax  Littorina saxatilis
barl  Babylonia areolata (ivory shell)
bgt  Biomphalaria glabrata (bloodfluke planorb)
gae  Gigantopelta aegis (peltospirid snail)
hrf  Haliotis rufescens (red abalone)
hrj  Haliotis rubra (blacklip abalone)
hasi  Haliotis asinina (tropical abalone)
hcra  Haliotis cracherodii (black abalone)
crg  Magallana gigas (Pacific oyster)
canu  Magallana angulata (Portugese oyster)
cvn  Crassostrea virginica (eastern oyster)
oed  Ostrea edulis (European flat oyster)
myi  Mizuhopecten yessoensis (Yesso scallop)
pmax  Pecten maximus (king scallop)
yba  Ylistrum balloti (Ballot's saucer scallop)
mcaf  Mytilus californianus (California mussel)
mmer  Mercenaria mercenaria (northern quahog)
rphi  Ruditapes philippinarum (Manila clam)
dpol  Dreissena polymorpha (zebra mussel)
maea  Mya arenaria (softshell)
obi  Octopus bimaculoides (California two-spot octopus)
osn  Octopus sinensis (East Asian common octopus)
ljp  Liolophura japonica (common chiton)
lak  Lingula anatina
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
egl  Echinococcus granulosus (hydatid tapeworm)
llon  Lineus longissimus (bootlace worm)
nve  Nematostella vectensis (starlet sea anemone)
epa  Exaiptasia diaphana (Aiptasia)
aten  Actinia tenebrosa (Australian red waratah sea anemone)
adf  Acropora digitifera (stony coral)
amil  Acropora millepora
mcaz  Montipora capricornis (leaf plate montipora)
mfoo  Montipora foliosa
pdam  Pocillopora damicornis (lace coral)
spis  Stylophora pistillata (Smooth Cauliflower Coral)
dgt  Dendronephthya gigantea (soft corals)
xen  Xenia sp. Carnegie-2017 (soft corals)
hsy  Hydractinia symbiolongicarpus
res  Rhopilema esculentum
aqu  Amphimedon queenslandica (sponge)
ath  Arabidopsis thaliana (thale cress)
aly  Arabidopsis lyrata (lyrate rockcress)
crb  Capsella rubella (pink shepherd's-purse)
csat  Camelina sativa (false flax)
eus  Eutrema salsugineum (saltwater cress)
brp  Brassica rapa (field mustard)
bna  Brassica napus (rape)
boe  Brassica oleracea (wild cabbage)
rsz  Raphanus sativus (radish)
thj  Tarenaya hassleriana (spider flower)
cpap  Carica papaya (papaya)
cit  Citrus sinensis (Valencia orange)
cic  Citrus x clementina (clementine)
pvy  Pistacia vera (pistachio)
minc  Mangifera indica (mango)
tcc  Theobroma cacao (cacao)
gra  Gossypium raimondii
ghi  Gossypium hirsutum (upland cotton)
gab  Gossypium arboreum (tree cotton)
hsyr  Hibiscus syriacus (Rose-of-Sharon)
dzi  Durio zibethinus (durian)
egr  Eucalyptus grandis (rose gum)
rarg  Rhodamnia argentea (silver malletwood)
gmx  Glycine max (soybean)
gsj  Glycine soja (wild soybean)
pvu  Phaseolus vulgaris (common bean)
vra  Vigna radiata (mung bean)
var  Vigna angularis (adzuki bean)
vun  Vigna unguiculata (cowpea)
vum  Vigna umbellata (ricebean)
ccaj  Cajanus cajan (pigeon pea)
aprc  Abrus precatorius (Indian licorice)
mtr  Medicago truncatula (barrel medic)
tpra  Trifolium pratense (red clover)
cam  Cicer arietinum (chickpea)
psat  Lathyrus oleraceus (garden pea)
vvo  Vicia villosa (hairy vetch)
lja  Lotus japonicus
adu  Arachis duranensis
aip  Arachis ipaensis
ahf  Arachis hypogaea (peanut)
lang  Lupinus angustifolius (narrow-leaved blue lupine)
pcin  Prosopis cineraria
qsa  Quillaja saponaria (soapbark tree)
fve  Fragaria vesca (woodland strawberry)
aans  Argentina anserina (silverweed cinquefoil)
rcn  Rosa chinensis (China rose)
pper  Prunus persica (peach)
pmum  Prunus mume (Japanese apricot)
pavi  Prunus avium (sweet cherry)
pdul  Prunus dulcis (almond)
mdm  Malus domestica (apple)
msyl  Malus sylvestris (European crab apple)
pxb  Pyrus x bretschneideri (Chinese white pear)
pcox  Pyrus communis (pear)
zju  Ziziphus jujuba (Chinese jujube)
mnt  Morus notabilis
csav  Cannabis sativa (hemp)
hlp  Humulus lupulus (common hop)
csv  Cucumis sativus (cucumber)
cmo  Cucumis melo (muskmelon)
bhj  Benincasa hispida (wax gourd)
mcha  Momordica charantia (bitter melon)
cmax  Cucurbita maxima (winter squash)
cmos  Cucurbita moschata (crookneck pumpkin)
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
rcu  Ricinus communis (castor bean)
mean  Mercurialis annua (annual mercury)
jcu  Jatropha curcas (Barbados nut)
hbr  Hevea brasiliensis (rubber tree)
mesc  Manihot esculenta (cassava)
pop  Populus trichocarpa (black cottonwood)
peu  Populus euphratica (Euphrates poplar)
palz  Populus alba (white poplar)
pnz  Populus nigra (Lombardy poplar)
jre  Juglans regia (English walnut)
cill  Carya illinoinensis (pecan)
cave  Corylus avellana (European hazelnut)
aglu  Alnus glutinosa (common alder)
qlo  Quercus lobata (valley oak)
csaa  Castanea sativa (European chestnut)
twl  Tripterygium wilfordii (thunder duke vine)
vvi  Vitis vinifera (wine grape)
vri  Vitis riparia (riverbank grape)
sly  Solanum lycopersicum (tomato)
spen  Solanum pennellii
sot  Solanum tuberosum (potato)
sstn  Solanum stenotomum
sdul  Solanum dulcamara (climbing nightshade)
cann  Capsicum annuum (peppers)
lbb  Lycium barbarum (goji berry)
nta  Nicotiana tabacum (common tobacco)
nsy  Nicotiana sylvestris (wood tobacco)
nto  Nicotiana tomentosiformis
nau  Nicotiana attenuata (coyote tobacco)
ini  Ipomoea nil (Japanese morning glory)
itr  Ipomoea triloba (trilobed morning glory)
sind  Sesamum indicum (sesame)
oeu  Olea europaea var. sylvestris (wild olive)
egt  Erythranthe guttata (spotted monkey flower)
sspl  Salvia splendens (scarlet sage)
smil  Salvia miltiorrhiza (redroot sage)
shis  Salvia hispanica (chia)
apan  Andrographis paniculata
hpum  Henckelia pumila
phua  Primulina huaijiensis
pebu  Primulina eburnea
ptab  Primulina tabacum
carb  Coffea arabica (coffee)
han  Helianthus annuus (common sunflower)
bhw  Bidens hawaiensis
ecad  Erigeron canadensis (horseweed)
lsv  Lactuca sativa (garden lettuce)
ccav  Cynara cardunculus var. scolymus (artichoke)
dcr  Daucus carota (carrot)
agrv  Apium graveolens (celery)
csin  Camellia sinensis (tea plant)
rvl  Rhododendron vialii
aew  Actinidia eriantha (wild kiwifruit)
dlt  Diospyros lotus (date-plum)
bvg  Beta vulgaris (sugar beet)
soe  Spinacia oleracea (spinach)
cqi  Chenopodium quinoa (quinoa)
atri  Amaranthus tricolor (tampala)
slaf  Silene latifolia (white campion)
mof  Malania oleifera
nnu  Nelumbo nucifera (sacred lotus)
ming  Macadamia integrifolia (macadamia nut)
tss  Telopea speciosissima (New South Wales waratah)
psom  Papaver somniferum (opium poppy)
osa  Oryza sativa japonica (Japanese rice)
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
obr  Oryza brachyantha (malo sina)
ogl  Oryza glaberrima (African rice)
bdi  Brachypodium distachyon (stiff brome)
ats  Aegilops tauschii (wheat D)
tdc  Triticum dicoccoides (wild emmer wheat)
taes  Triticum aestivum (bread wheat)
tua  Triticum urartu (red wild einkorn wheat)
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
lper  Lolium perenne (perennial ryegrass)
lrd  Lolium rigidum (rigid ryegrass)
sbi  Sorghum bicolor (sorghum)
zma  Zea mays (maize)
mflo  Miscanthus floridulus
sita  Setaria italica (foxtail millet)
svs  Setaria viridis (green foxtail)
pvir  Panicum virgatum (switchgrass)
phai  Panicum hallii (Hall's panicgrass)
paua  Phragmites australis (common reed)
tang  Typha angustifolia (narrow-leaf cattail)
pda  Phoenix dactylifera (date palm)
egu  Elaeis guineensis (African oil palm)
mus  Musa acuminata (dessert banana)
zof  Zingiber officinale (ginger)
dct  Dendrobium catenatum
peq  Phalaenopsis equestris
aof  Asparagus officinalis (garden asparagus)
msin  Magnolia sinica
acak  Aristolochia californica
ncol  Nymphaea colorata (blue-petal water lily)
atr  Amborella trichopoda
cjf  Cryptomeria japonica (Japanese cedar)
smo  Selaginella moellendorffii
ppp  Physcomitrium patens (spreading earthmoss)
cre  Chlamydomonas reinhardtii
vcn  Volvox carteri f. nagariensis
cvr  Chlorella variabilis
apro  Auxenochlorella protothecoides
ddi  Dictyostelium discoideum (cellular slime mold)
dpp  Dictyostelium purpureum (cellular slime mold)
dfa  Cavenderia fasciculata (cellular slime mold)
acan  Acanthamoeba castellanii
ngr  Naegleria gruberi
enf  Enterobacter sp. FY-07
kor  Kosakonia oryzae
krd  Kosakonia radicincitans
koo  Kosakonia oryzendophytica
kou  Kosakonia sp. MUSA4
kca  Kosakonia calanthes
kin  Phytobacter ursingii
pdz  Phytobacter diazotrophicus
mety  Phytobacter sp. MRY16-398
mphg  Mangrovibacter phragmitis
ebc  Enterobacteriaceae bacterium ENNIH2
sera  Prodigiosinella confusarubida ATCC 39006
serq  Prodigiosinella confusarubida ATCC 39006
prod  Prodigiosinella aquatilis
daq  Dickeya aquatica
dlc  Dickeya lacustris
dda  Musicola paradisiaca
bgj  Brenneria goodwinii
brb  Brenneria rubrifaciens
bng  Brenneria nigrifluens
biz  Brenneria izadpanahii
lbq  Lonsdalea britannica
lpop  Lonsdalea populi
xbc  Pseudolysobacter antarcticus
xba  Ahniella affigens
tamn  Tahibacter amnicola
pae  Pseudomonas aeruginosa PAO1
paev  Pseudomonas aeruginosa PAO1-VE13
paei  Pseudomonas aeruginosa PAO1-VE2
pau  Pseudomonas aeruginosa UCBPP-PA14
pag  Pseudomonas aeruginosa LESB58
paf  Pseudomonas aeruginosa M18
pnc  Pseudomonas aeruginosa NCGM2.S1
paeb  Pseudomonas aeruginosa NCGM 1900
pdk  Pseudomonas aeruginosa DK2
psg  Pseudomonas aeruginosa B136-33
prp  Pseudomonas aeruginosa RP73
paep  Pseudomonas aeruginosa PA1
paer  Pseudomonas aeruginosa PA1R
paem  Pseudomonas aeruginosa MTB-1
pael  Pseudomonas aeruginosa LES431
paes  Pseudomonas aeruginosa SCV20265
paeu  Pseudomonas aeruginosa PA38182
paeg  Pseudomonas aeruginosa YL84
paec  Pseudomonas aeruginosa c7447m
paeo  Pseudomonas aeruginosa PAO581
sech  Pseudomonas aeruginosa B18
pap  Pseudomonas paraeruginosa PA7
ppaa  Pseudomonas paraeruginosa
ppu  Pseudomonas putida KT2440
ppf  Pseudomonas putida F1
ppg  Pseudomonas putida GB-1
ppw  Pseudomonas putida W619
ppt  Pseudomonas putida S16
ppb  Pseudomonas putida BIRD-1
ppi  Pseudomonas putida ND6
ppx  Pseudomonas putida DOT-T1E
ppuh  Pseudomonas putida HB3267
pput  Pseudomonas putida H8234
ppun  Pseudomonas putida NBRC 14164
ppud  Pseudomonas putida DLL-E4
pmon  Pseudomonas monteilii SB3078
pmot  Pseudomonas monteilii SB3101
ppj  Pseudomonas plecoglossicida
pmol  Pseudomonas mosselii
pald  Pseudomonas alloputida
pix  Pseudomonas inefficax
pmos  Pseudomonas soli
pfl  Pseudomonas protegens Pf-5
pprc  Pseudomonas protegens CHA0
ppro  Pseudomonas protegens Cab57
pfe  Pseudomonas ogarae F113
pza  Pseudomonas ogarae SWRI108
pfn  Pseudomonas fluorescens UK4
pfo  Pseudomonas fluorescens Pf0-1
pfs  Pseudomonas fluorescens SBW25
pfc  Pseudomonas fluorescens A506
pfb  Pseudomonas synxantha LBUM223
pman  Pseudomonas mandelii
ptv  Pseudomonas trivialis
pcg  Pseudomonas corrugata
pvr  Pseudomonas veronii
pazo  Pseudomonas azotoformans
poi  Pseudomonas orientalis
prx  Pseudomonas rhodesiae
pmed  Pseudomonas mediterranea
pkr  Pseudomonas koreensis
pmud  Pseudomonas mucidolens
ptol  Pseudomonas tolaasii
pmab  Pseudomonas marginalis
pbre  Pseudomonas brenneri
pfw  Pseudomonas simiae PCL1751
pff  Pseudomonas simiae PICF7
pfx  Pseudomonas lurida
pen  Pseudomonas entomophila
pba  Pseudomonas brassicacearum subsp. brassicacearum NFM421
pbc  Pseudomonas brassicacearum DF41
ppuu  Pseudomonas sp. UW4
psv  Pseudomonas sp. VLB120
psk  Pseudomonas gorinensis
pch  Pseudomonas chlororaphis PA23
pcz  Pseudomonas chlororaphis PCL1606
pcp  Pseudomonas chlororaphis subsp. aurantiaca
pchp  Pseudomonas chlororaphis subsp. piscium
palk  Pseudomonas alkylphenolica
ppv  Pseudomonas parafulva
psem  Pseudomonas sp. MRSN12121
psec  Pseudomonas sp. CCOS 191
ppsy  Pseudomonas versuta
psos  Pseudomonas sp. Os17
pfk  Pseudomonas frederiksbergensis
panr  Pseudomonas antarctica
psil  Pseudomonas silesiensis
pym  Pseudomonas yamanorum
pke  Pseudomonas kribbensis
pum  Pseudomonas umsongensis
ppsh  Pseudomonas psychrophila
pgy  Pseudomonas glycinae
pvk  Pseudomonas viciae
pbz  Pseudomonas bijieensis
pmao  Pseudomonas marincola
pata  Pseudomonas atacamensis
pdw  Pseudomonas donghuensis
pze  Pseudomonas zeae
pmoe  Pseudomonas monsensis
psep  Pseudomonas sessilinigenes
ppii  Pseudomonas piscis
pvw  Pseudomonas vanderleydeniana
ptrt  Pseudomonas tritici
pxa  Pseudomonas xanthosomatis
psam  Pseudomonas salmasensis
ptz  Pseudomonas tensinigenes
pqi  Pseudomonas qingdaonensis
pshh  Pseudomonas shahriarae
pxn  Pseudomonas xantholysinigenes
phv  Pseudomonas hamedanensis
pprg  Pseudomonas promysalinigenes
panh  Pseudomonas anuradhapurensis
pasg  Pseudomonas asgharzadehiana
pmam  Pseudomonas maumuensis
paze  Pseudomonas azerbaijanorientalis
palv  Pseudomonas alvandae SWRI17
pcas  Pseudomonas alvandae B21-020
pory  Pseudomonas oryziphila
ptk  Pseudomonas tructae
pie  Pseudomonas iranensis
pwy  Pseudomonas wayambapalatensis
ptae  Pseudomonas taetrolens
pgf  Pseudomonas germanica
pju  Pseudomonas juntendi
piz  Pseudomonas izuensis
ppeg  Pseudomonas pergaminensis
psii  Pseudomonas siliginis
psih  Pseudomonas sichuanensis
pfit  Pseudomonas fitomaticsae
pasi  Pseudomonas asiatica
pkm  Pseudomonas kermanshahensis
pnb  Pseudomonas nunensis
ptai  Pseudomonas taiwanensis
pkk  Pseudomonas kurunegalensis
pkj  Pseudomonas kielensis
phom  Pseudomonas hormoni
pcuc  Pseudomonas cucumis
ppae  Pseudomonas palleroniana
prhz  Pseudomonas rhizophila
psjy  Pseudomonas sp. JY-Q
pshs  Pseudomonas sp. HS6
phef  Pseudomonas hefeiensis
plis  Pseudomonas serboccidentalis
psnc  Pseudomonas sp. NC02
pfou  Pseudomonas fortuita
pbej  Pseudomonas beijingensis
pkv  Pseudomonas khavaziana
pskp  Pseudomonas sp. KU43P
pdeu  Pseudomonas defluvii
pqe  Pseudomonas quebecensis
psdt  Pseudomonas sp. Stari2
pcaa  Pseudomonas canadensis
pbub  Pseudomonas bubulae
psml  Pseudomonas sp. ML2-2023-3
psmz  Pseudomonas sp. ML2-2023-6
pmor  Pseudomonas moorei
pthv  Pseudomonas thivervalensis
pssx  Pseudomonas sp. SXM-1
pagb  Pseudomonas agarici
psns  Pseudomonas sp. NS1(2017)
psru  Pseudomonas sp. RU47
pim  Pseudomonas imrae
psyq  Pseudomonas sp. Y39-6
ppse  Ectopseudomonas oleovorans
pty  Ectopseudomonas toyotomiensis
paew  Paraneptunicella aestuarii
agz  Agarivorans sp. TSD2052
agq  Agarivorans sp. B2Z047
agar  Agarivorans sp. OAG1
afy  Acidihalobacter ferrooxydans
gai  Granulosicoccus antarcticus
ccag  Chromohalobacter canadensis
hak  Halomonas sp. KO116
ham  Halomonas sp. R57-5
hag  Halomonas sp. GFAJ-1
haf  Halomonas sp. SF2003
hpro  Halomonas profundus
hbp  Halomonas sp. TD01
half  Halomonas alkaliantarctica
haso  Halomonas sp. 'Soap Lake #7'
hash  Halomonas sp. SH5A2
hams  Halomonas sp. MS1
haah  Halomonas sp. A3H3
habd  Halomonas sp. BDJS001
hafn  Halomonas sp. FeN2
hany  Halomonas sp. NyZ770
haaz  Halomonas sp. A020
hamz  Halomonas sp. M1
hspe  Halomonas sp. A40-4
hvn  Vreelandella venusta MA-ZP17-13
hhh  Vreelandella venusta Y2
hol  Vreelandella olivaria
hpiz  Vreelandella piezotolerans
hnp  Vreelandella neptunia
htt  Vreelandella titanicae
haxi  Vreelandella aquamarina Althf1
vre  Vreelandella sp. F11
vrs  Vreelandella sp. SM1641
cmai  Cobetia marina
camh  Cobetia amphilecti
cobe  Cobetia sp. AM6
cobb  Cobetia sp. 4B
cobd  Cobetia sp. D5
cobc  Cobetia sp. cqz5-12
nik  Nitrincola iocasae
gsn  Gynuella sunshinyii
pagi  Pseudaeromonas aegiceratis
thin  Thioglobus sp. NP1
cdiz  Celerinatantimonas diazotrophica
rsl  Ralstonia solanacearum PSI07
rsg  Ralstonia syzygii subsp. celebesensis
rin  Ralstonia insidiosa
bvi  Burkholderia vietnamiensis G4
bve  Burkholderia vietnamiensis LMG 10929
bur  Burkholderia lata
bcm  Burkholderia orbicola
bch  Burkholderia cenocepacia HI2424
bcj  Burkholderia cenocepacia J2315
bcen  Burkholderia cenocepacia DDS 22E-1
bcew  Burkholderia cenocepacia DWS 37E-2
bceo  Burkholderia cenocepacia H111
bam  Burkholderia ambifaria AMMD
bac  Burkholderia ambifaria MC40-6
bmj  Burkholderia multivorans ATCC 17616 (Tohoku)
bmu  Burkholderia multivorans ATCC 17616 (JGI)
bmk  Burkholderia multivorans DDS 15A-1
bmul  Burkholderia multivorans ATCC BAA-247
bced  Burkholderia cepacia DDS 7H-2
bcep  Burkholderia cepacia ATCC 25416
bpyr  Burkholderia pyrrocinia
bcon  Burkholderia contaminans
bub  Burkholderia ubonensis
bdf  Burkholderia diffusa
blat  Burkholderia latens
btei  Burkholderia territorii
bsem  Burkholderia seminalis
bpsl  Burkholderia pseudomultivorans
bmec  Burkholderia metallica
bstg  Burkholderia stagnalis
bstl  Burkholderia stabilis
bari  Burkholderia arboris
baen  Burkholderia aenigmatica
bser  Burkholderia semiarida
bug  Burkholderia sp. CCGE1001
bgf  Burkholderia sp. CCGE1003
bgd  Burkholderia gladioli BSR3
bgo  Burkholderia gladioli ATCC 10248
byi  Burkholderia sp. YI23
buk  Burkholderia sp. KJ006
buq  Burkholderia sp. HB1
bum  Burkholderia sp. PAMC 26561
bui  Burkholderia sp. PAMC 28687
burk  Burkholderia sp. JP2-270
burt  Burkholderia sp. THE68
burm  Burkholderia sp. MS389
burf  Burkholderia sp. FERM BP-3421
buv  Burkholderia sp. MS455
bxe  Paraburkholderia xenovorans LB400
bxb  Paraburkholderia xenovorans LB400
bph  Paraburkholderia phymatum
bge  Paraburkholderia atlantica CCGE1002
bpx  Paraburkholderia phenoliruptrix
bpy  Paraburkholderia phytofirmans PsJN
buz  Paraburkholderia phytofirmans OLGA172
bfn  Paraburkholderia fungorum
bcai  Paraburkholderia caribensis
pspw  Paraburkholderia sprentiae
parb  Paraburkholderia aromaticivorans
phs  Paraburkholderia hospita
pter  Paraburkholderia terrae
pgp  Paraburkholderia graminis
pcj  Paraburkholderia caledonica
pts  Paraburkholderia terricola
pcaf  Paraburkholderia caffeinilytica
pmeg  Paraburkholderia megapolitana
ptro  Paraburkholderia tropica
pgis  Paraburkholderia ginsengisoli
pacp  Paraburkholderia acidiphila
pacs  Paraburkholderia acidisoli
pdio  Paraburkholderia dioscoreae
pbry  Paraburkholderia bryophila
psaa  Paraburkholderia sabiae
pkf  Paraburkholderia kirstenboschensis
ppai  Paraburkholderia pallida
plad  Paraburkholderia largidicola
pazz  Paraburkholderia sp. 22B1P
brh  Mycetohabitans rhizoxinica
caba  Caballeronia sp. SBC2
buo  Caballeronia insecticola
cabk  Caballeronia sp. NK8
bue  Caballeronia cordobensis
tvl  Trinickia violacea
rsb  Rhodoferax saidenbachensis
rac  Rhodoferax antarcticus
rhf  Rhodoferax sediminis CHu59-6-5
rhg  Rhodoferax aquaticus
rhoa  Rhodoferax sp. AJA081-3
rmk  Rhodoferax mekongensis
rlh  Rhodoferax lithotrophicus
rhof  Rhodoferax sp. WC2427
pna  Polaromonas naphthalenivorans
ack  Acidovorax sp. KKS102
acio  Acidovorax sp. 1608163
atem  Acidovorax temperans
aciq  Acidovorax sp. DW039
aciv  Acidovorax sp. JMULE5
asah  Acidovorax sacchari
afac  Acidovorax facilis
aav  Paracidovorax citrulli
aaa  Paracidovorax avenae
vei  Verminephrobacter eiseniae
dac  Delftia acidovorans
del  Delftia sp. Cs1-4
dts  Delftia tsuruhatensis
dhk  Delftia sp. HK171
dla  Delftia lacustris
vbo  Variovorax boronicumulans
vaz  Variovorax sp. PAMC26660
vav  Variovorax sp. 38R
codo  Comamonas odontotermitis
ctez  Comamonas terrigena
comb  Comamonas sp. B21-038
csqu  Comamonas squillarum
cpis  Comamonas piscis
csen  Comamonas sediminis
dih  Diaphorobacter sp. HDW4A
drg  Diaphorobacter ruginosibacter
kia  Roseateles sp. DAIF2
pais  Paucibacter sediminis
idc  Ideonella dechloratans
jag  Janthinobacterium agaricidamnosum
jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
jal  Janthinobacterium sp. LM6
jsv  Janthinobacterium svalbardensis
jas  Janthinobacterium tructae
jlv  Janthinobacterium lividum
jah  Janthinobacterium sp. HH102
jri  Janthinobacterium rivuli
jae  Janthinobacterium aestuarii
mnr  Massilia sp. NR 4-1
masw  Massilia sp. WG5
mass  Massilia violaceinigra
masy  Massilia sp. YMA4
manc  Massilia antarctica
mfy  Massilia forsythiae
mvar  Massilia varians
meny  Massilia endophytica
mlir  Massilia litorea
masz  Pseudoduganella armeniaca
mali  Pseudoduganella albidiflava
mum  Pseudoduganella umbonata
mfla  Pseudoduganella flava
mpli  Pseudoduganella plicata
tct  Pseudoduganella chitinolytica
plue  Pseudoduganella lutea
dug  Duganella dendranthematis
dzo  Duganella zoogloeoides
tmj  Telluria mixta
ehb  Empedobacter haloabium
upv  Undibacterium parvum
upi  Undibacterium piscinae
und  Undibacterium sp. KW1
uny  Undibacterium sp. YM2
thi  Thiomonas arsenitoxydans
aon  Aquabacterium olei
etb  Eleftheria terrae
beba  Betaproteobacteria bacterium GR16-43
mlo  Mesorhizobium japonicum MAFF 303099
mln  Mesorhizobium loti NZP2037
mci  Mesorhizobium ciceri biovar biserrulae
mcic  Mesorhizobium ciceri CC1192
mop  Mesorhizobium opportunistum
mam  Mesorhizobium australicum
mamo  Mesorhizobium amorphae
mesw  Mesorhizobium sp. WSM1497
mesm  Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
mesp  Mesorhizobium sp. Pch-S
mhua  Mesorhizobium huakuii
mjr  Mesorhizobium jarvisii
merd  Mesorhizobium erdmanii
mesr  Mesorhizobium sp. 8
moh  Mesorhizobium onobrychidis
mmei  Mesorhizobium mediterraneum
mesj  Mesorhizobium sp. J8
mesi  Mesorhizobium sp. PAMC28654
mesu  Mesorhizobium sp. AR10
mess  Mesorhizobium sp. ANAO-SY3R2
mews  Mesorhizobium sp. WSM4904
mewm  Mesorhizobium sp. WSM4906
niy  Nitratireductor mangrovi
nki  Nitratireductor kimnyeongensis
nrh  Nitratireductor rhodophyticola
ntu  Nitratireductor thuwali
meso  Aquibium oceanicum
mes  Chelativorans sp. BNC1
chea  Chelativorans sp. AA-79
aak  Aminobacter aminovorans
amih  Aminobacter sp. MSH1
amis  Aminobacter sp. Y103A
anj  Aminobacter niigataensis
amio  Aminobacter sp. NyZ550
pht  Phyllobacterium zundukense
phyl  Phyllobacterium sp. 628
pmel  Phyllobacterium meliloti
pped  Phyllobacterium pellucidum
rpod  Roseitalea porphyridii
orm  Oricola thermophila
ost  Oceaniradius stylonematis
sme  Sinorhizobium meliloti 1021
smk  Sinorhizobium meliloti AK83
smq  Sinorhizobium meliloti BL225C
smx  Sinorhizobium meliloti SM11
smi  Sinorhizobium meliloti Rm41
smeg  Sinorhizobium meliloti GR4
smel  Sinorhizobium meliloti 2011
smer  Sinorhizobium meliloti RMO17
smd  Sinorhizobium medicae
rhi  Sinorhizobium fredii NGR234
sfh  Sinorhizobium fredii HH103
sfd  Sinorhizobium fredii USDA 257
six  Sinorhizobium sp. RAC02
same  Sinorhizobium americanum
sino  Sinorhizobium sp. CCBAU 05631
esj  Sinorhizobium sojae
eak  Sinorhizobium alkalisoli
emx  Sinorhizobium mexicanum
enu  Sinorhizobium numidicum
egi  Sinorhizobium garamanticum
skm  Sinorhizobium kummerowiae
steg  Sinorhizobium terangae
schp  Sinorhizobium chiapasense
ead  Ensifer adhaerens OV14
eah  Ensifer adhaerens Casida A
ecaa  Ensifer canadensis
enp  Ensifer sp. PDNC004
eaw  Ensifer aridi
agc  Agrobacterium sp. RAC06
avv  Agrobacterium vitis VAT03-9
avf  Agrobacterium vitis VAR03-1
avi  Allorhizobium ampelinum
ret  Rhizobium etli CFN 42
rec  Rhizobium etli CIAT 652
rel  Rhizobium etli bv. mimosae Mim1
rep  Rhizobium etli bv. phaseoli IE4803
rei  Rhizobium etli bv. mimosae IE4771
rle  Rhizobium johnstonii
rlt  Rhizobium leguminosarum bv. trifolii WSM2304
rlg  Rhizobium leguminosarum bv. trifolii WSM1325
rlb  Rhizobium leguminosarum bv. trifolii WSM1689
rlu  Rhizobium leguminosarum bv. trifolii CB782
rtr  Rhizobium tropici
rhl  Rhizobium favelukesii
rga  Rhizobium gallicum bv. gallicum
rhn  Rhizobium sp. N1341
rpha  Rhizobium phaseoli
rhx  Rhizobium sp. N731
rhk  Rhizobium sp. Kim5
rez  Rhizobium esperanzae
rjg  Rhizobium jaguaris
rhr  Rhizobium sp. 11515TR
rgr  Rhizobium grahamii
rad  Rhizobium acidisoli
rii  Rhizobium indicum
rhid  Rhizobium hidalgonense
rbq  Rhizobium binae
rln  Rhizobium lentis
rban  Rhizobium bangladeshense
rrg  Rhizobium ruizarguesonis
rls  Rhizobium lusitanum
rros  Rhizobium rosettiformans
raw  Rhizobium anhuiense bv. trifolii
rsul  Rhizobium sullae
rlw  Rhizobium laguerreae
rrho  Rhizobium rhododendri
rtu  Rhizobium tumorigenes
rct  Rhizobium croatiense
ara  Rhizobium rhizogenes K84
rbw  Rhizobium brockwellii
rif  Rhizobium indigoferae
rhiz  Rhizobium sp. BT03
rhib  Rhizobium sp. AB2/73
rhia  Rhizobium sp. ACO-34A
rhiw  Rhizobium sp. WYJ-E13
rbin  Rhizobium binxianense
rhip  Rhizobium sp. Pop5
ngl  Neorhizobium galegae bv. officinalis bv. officinalis HAMBI 1141
ngg  Neorhizobium galegae bv. orientalis HAMBI 540
neo  Neorhizobium sp. SOG26
nen  Neorhizobium sp. NCHU2750
npm  Neorhizobium petrolearium
rht  Pseudorhizobium banfieldiae
rfv  Pseudorhizobium flavum
shz  Shinella sp. HZN7
szo  Shinella zoogloeoides
soj  Shinella oryzae
ssum  Shinella sumterensis
shin  Shinella sp. XGS7
abaw  Georhizobium profundi
pdes  Peteryoungia desertarenae
hoe  Hoeflea sp. IMCC20628
hoax  Hoeflea alexandrii
kai  Kaistia sp. 32K
bme  Brucella melitensis bv. 1 16M
bmel  Brucella melitensis bv. 1 16M
bmi  Brucella melitensis ATCC 23457
bmz  Brucella melitensis M28
bmg  Brucella melitensis M5-90
bmw  Brucella melitensis NI
bmee  Brucella melitensis bv. 3 Ether
baa  Brucella abortus A13334
babo  Brucella abortus bv. 2 86/8/59
babr  Brucella abortus bv. 6 870
babt  Brucella abortus 63 75
babb  Brucella abortus BDW
babu  Brucella abortus bv. 9 C68
babs  Brucella abortus BER
babc  Brucella abortus NCTC 10505
bms  Brucella suis 1330
bsi  Brucella suis 1330
bsf  Brucella suis bv. 1
bsui  Brucella suis bv. 2 Bs143CITA
bsup  Brucella suis bv. 2 PT09143
bsuv  Brucella suis bv. 2 PT09172
bsuc  Brucella suis bv. 2 Bs364CITA
bmt  Brucella suis ATCC 23445
bsz  Brucella suis bv. 3
bsv  Brucella suis VBI22
bsw  Brucella suis ZW043
bsg  Brucella suis ZW046
bov  Brucella ovis
bcs  Brucella canis ATCC 23365
bsk  Brucella canis HSK A52141
bol  Brucella canis Oliveri
bcar  Brucella canis RM6/66
bcas  Brucella canis SVA13
bmr  Brucella microti
bpp  Brucella pinnipedialis B2/94
bpv  Brucella pinnipedialis 6/566
bcet  Brucella ceti TE10759-12
bcee  Brucella ceti TE28753-12
bvl  Brucella vulpis
bru  Brucella sp. 2002734562
brj  Brucella sp. 09RB8471
oin  Brucella intermedia
bio  Brucella inopinata
oan  Brucella anthropi ATCC 49188
oah  Brucella anthropi OAB
ops  Brucella pseudogrignonensis
bpsn  Brucella pseudintermedia
bruc  Brucella sp. JSBI001
brub  Brucella sp. BO3
ocr  Ochrobactrum sp. MT180101
ocl  Ochrobactrum sp. EEELCW01
occ  Ochrobactrum sp. BTU1
och  Ochrobactrum quorumnocens
pscq  Pseudochrobactrum algeriensis
psxf  Pseudochrobactrum sp. XF203
bbt  Bradyrhizobium sp. BTAi1
lne  Labrys sp. KNU-23
moc  Microvirga ossetica
deq  Devosia sp. H5989
devd  Devosia sp. D6-9
mmyr  Maritalea myrionectae
yti  Paradevosia tibetensis
mhar  Mariluticola halotolerans
pleo  Pleomorphomonas sp. SM30
hdi  Hartmannibacter diazotrophicus
mey  Martelella endophytica
maad  Martelella sp. AD-3
mmed  Martelella mediterranea
mlut  Martelella lutilitoris
aua  Aureimonas sp. AU20
aala  Aureimonas sp. OT7
aalm  Aureimonas altamirensis
auz  Aureimonas sp. SA4125
aub  Aurantimonas sp. HBX-1
jav  Antarcticirhabdus aurantiaca
noh  Nordella sp. HKS 07
brn  Breoghania sp. L-A4
pphr  Pannonibacter phragmitetus
lap  Labrenzia sp. CP4
labr  Labrenzia sp. VG12
labp  Labrenzia sp. PHM005
labt  Labrenzia sp. THAF35
lagg  Roseibium algicola
rpop  Roseibium porphyridii
ragg  Roseibium aggregatum
siw  Stappia indica
liz  Lichenihabitans sp. PAMC28606
mflg  Methyloraptor flagellatus
sil  Ruegeria pomeroyi
sit  Ruegeria sp. TM1040
rua  Ruegeria sp. AD91A
rut  Ruegeria sp. THAF33
rcon  Ruegeria conchae
ruy  Ruegeria sp. YS9
jan  Jannaschia sp. CCS1
jov  Jannaschia ovalis
rde  Roseobacter denitrificans
rli  Roseobacter litoralis
rpon  Roseobacter ponti
rfu  Roseobacter fucihabitans
dsh  Dinoroseobacter shibae
pga  Phaeobacter inhibens DSM 17395
pgl  Phaeobacter inhibens 2.10
pgd  Phaeobacter gallaeciensis DSM 26640
php  Phaeobacter porticola
ppic  Phaeobacter piscinae
phq  Phaeobacter sp. LSS9
phae  Phaeobacter sp. G2
oat  Octadecabacter antarcticus
oar  Octadecabacter arcticus
otm  Octadecabacter temperatus
oct  Octadecabacter sp. SW4
lmd  Leisingera methylohalidivorans
lej  Leisingera sp. NJS204
laqu  Leisingera aquaemixtae
lcae  Leisingera caerulea
leim  Leisingera sp. M523
cid  Celeribacter indicus
cmar  Celeribacter marinus
ceh  Celeribacter ethanolicus
cbak  Celeribacter baekdonensis
malg  Marinovum algicola
con  Actibacterium sp. EMB200-NS6
ypac  Alloyangia pacifica
tpro  Salipiger profundus
paby  Salipiger abyssi
suam  Sulfitobacter alexandrii
sulz  Sulfitobacter sp. SK012
suli  Sulfitobacter sp. JL08
suld  Sulfitobacter sp. D7
spot  Sulfitobacter pontiacus
smed  Sulfitobacter mediterraneus
sinl  Sulfitobacter indolifex
sfav  Sulfitobacter faviae
sual  Sulfitobacter albidus
sdub  Sulfitobacter dubius
sulb  Sulfitobacter sp. CB2047
suly  Sulfitobacter sp. TCYB15
sulp  Sulfitobacter sp. PM12
susq  Sulfitobacter sp. S190
spse  Pseudosulfitobacter pseudonitzschiae
tom  Tateyamaria omphalii
rmm  Roseovarius mucosus
rok  Roseovarius sp. AK1035
rid  Roseovarius indicus
rom  Roseovarius faecimaris
roh  Roseovarius sp. THAF27
rpel  Roseovarius pelagicus
rphc  Roseovarius phycicola
rrl  Roseovarius rhodophyticola
aht  Antarctobacter heliothermus
sagu  Sagittula sp. P11
sstl  Sagittula stellata
sagz  Sagittula sp. MA-2
thaa  Thalassococcus sp. S3
ocd  Oceanicola sp. D3
rot  Roseivivax sp. THAF197b
rmh  Roseivivax marinus
malu  Mameliella alba
tgl  Thalassovita gelatinovora
hat  Falsihalocynthiibacter arcticus
palx  Ponticoccus alexandrii
lsal  Loktanella salsilacus
try  Tropicibacter oceani
plcg  Palleronia sp. LCG004
maru  Palleronia sp. THAF1
rmai  Roseicyclus marinus
red  Roseicyclus elongatus
asca  Aliisedimentitalea scapharcae
acld  Algirhabdus cladophorae
seoh  Seohaeicola sp. tig00000074
matg  Marivita sp. tig00000067
boo  Rhodophyticola sp. CCM32
rpoh  Rhodophyticola porphyridii
rsp  Cereibacter sphaeroides 2.4.1
rsh  Cereibacter sphaeroides ATCC 17029
rsq  Cereibacter sphaeroides ATCC 17025
rsk  Cereibacter sphaeroides KD131
cazt  Cereibacter azotoformans
rbl  Pseudogemmobacter blasticus
fyt  Fuscovulum ytuae
pami  Paracoccus aminophilus
pye  Paracoccus yeei
pzh  Paracoccus zhejiangensis
paro  Paracoccus tegillarcae
pmut  Paracoccus mutanolyticus
pars  Paracoccus suum
parr  Paracoccus sp. Arc7-R13
paak  Paracoccus sp. AK26
pkd  Paracoccus kondratievae
plia  Paracoccus liaowanqingii
psan  Paracoccus sanguinis
pmau  Paracoccus marcusii
psew  Paracoccus seriniphilus
psap  Paracoccus saliphilus
pfis  Paracoccus fistulariae
paex  Paracoccus aestuarii
pstl  Paracoccus stylophorae
pals  Paracoccus albus
phoi  Paracoccus homiensis
ptp  Planktomarina temperata
rsu  Rhodovulum sulfidophilum
rhm  Rhodovulum sp. MB263
rhc  Rhodovulum sp. P5
rhov  Rhodovulum sp. HP10
rmb  Tritonibacter mobilis
tsco  Tritonibacter scottomollicae
don  Marivivens sp. JLT3646
rbz  Aestuarium zhoushanense
thw  Thioclava nitratireducens
tec  Thioclava electrotropha
tlb  Thioclava litoralis
lvs  Yoonia vestfoldensis
yag  Yoonia algicola
yrh  Yoonia rhodophyticola
geh  Paragemmobacter aquarius
gfu  Gemmobacter fulvus
taw  Tabrizicola piscis
salo  Silicimonas algicola
sedi  Parasedimentitalea marina
ppso  Parasedimentitalea psychrophila
pseb  Pseudorhodobacter turbinis
lit  Qingshengfaniella alkalisoli
ppru  Paroceanicella profunda
paed  Pseudohalocynthiibacter aestuariivivens
pamo  Profundibacter amoris
poz  Pontivivens ytuae
mon  Pontivivens nitratireducens
pshq  Pseudooceanicola spongiae
ppaf  Pelagovum pacificum
pgv  Polymorphum gilvum
cact  Cognatishimia activa
hdh  Pikeienuella piscinae
cmag  Pacificitalea manganoxidans
gce  Gymnodinialimonas ceratoperidinii
gyj  Gymnodinialimonas sp. 57CJ19
nsm  Neotabrizicola shimadae
aalk  Abyssibius alkaniclasticus
amyl  Amylibacter sp. IMCC11727
amaq  Algicella marina
rhoc  Fontisubflavum oceani
pbae  Roseinatronobacter sp. S2
rbg  Roseinatronobacter bogoriensis subsp. barguzinensis
lvr  Limimaricola variabilis
bosg  Boseongicola sp. MH-Pat-all_autometa_1-3
manh  Marinibacterium anthonyi
faq  Rhodobacteraceae bacterium SC52
sinr  Sinirhodobacter sp. HNIBRBA609
rcp  Rhodobacter capsulatus
rhp  Rhodobacter xanthinilyticus
goh  Gluconobacter oxydans H24
gti  Gluconobacter thailandicus
gfa  Gluconobacter frateurii
gdi  Gluconacetobacter diazotrophicus PA1 5 (Brazil)
gdj  Gluconacetobacter diazotrophicus PA1 5 (JGI)
gxy  Komagataeibacter medellinensis
gxl  Komagataeibacter xylinus
keu  Komagataeibacter europaeus
ksc  Komagataeibacter saccharivorans
kre  Komagataeibacter rhaeticus
koi  Komagataeibacter oboediens
apt  Acetobacter pasteurianus IFO 3283-01
apw  Acetobacter pasteurianus IFO 3283-01-42C
apf  Acetobacter pasteurianus IFO 3283-03
apu  Acetobacter pasteurianus IFO 3283-07
apg  Acetobacter pasteurianus IFO 3283-12
apq  Acetobacter pasteurianus IFO 3283-22
apx  Acetobacter pasteurianus IFO 3283-26
apz  Acetobacter pasteurianus IFO 3283-32
apk  Acetobacter pasteurianus 386B
asz  Acetobacter senegalensis
aace  Acetobacter aceti
ato  Acetobacter tropicalis
aot  Acetobacter orientalis
aoy  Acetobacter oryzoeni
abg  Asaia bogorensis
kba  Kozakia baliensis
nch  Neoasaia chiangmaiensis
ntn  Neokomagataea tanensis
lck  Lichenicola cladoniae
ngu  Nguyenibacter sp. L1
azl  Azospirillum sp. B510
ali  Azospirillum lipoferum
ati  Azospirillum thiophilum
ahu  Azospirillum humicireducens
azm  Azospirillum ramasamyi
azz  Azospirillum thermophilum
aoz  Azospirillum oryzae
azs  Azospirillum sp. TSH100
azp  Azospirillum sp. TSA2s
adj  Azospirillum doebereinerae
nao  Nitrospirillum viridazoti
skt  Skermanella cutis
smuc  Skermanella mucosa
sroe  Skermanella rosea
txi  Thalassospira xiamenensis
thac  Thalassospira marina
tii  Thalassospira indica
thai  Thalassospira sp. A40-3
tlu  Thalassospira lucentensis
ttb  Thalassospira tepidiphila
thgo  Thalassospira sp. GO-4
thad  Thalassospira sp. B30-1
naci  Nisaea acidiphila
thar  Thalassobaculum sp. OXR-137
tmo  Tistrella mobilis
ecog  Paremcibacter congregatus
snea  Sneathiella marina
aciy  Acidithiobacillus sp. YTS05
afh  Acidithiobacillus ferrianus
sur  Stigmatella aurantiaca
pbru  Pendulispora brunnea
prue  Pendulispora rubella
palj  Pendulispora albinea
scl  Sorangium cellulosum So ce56
scu  Sorangium cellulosum So0157-2
sorg  Sorangium sp. So ce836
ccro  Chondromyces crocatus
pauu  Polyangium aurulentum
mrm  Minicystis rosea
llu  Labilithrix luteola
nann  Nannocystis punicea
ole  Horticoccus luteus
min  Methylacidiphilum infernorum
mkc  Methylacidiphilum kamchatkense
mfh  Methylacidiphilum fumarolicum
mcao  Methylacidiphilum caldifontis
aagg  Anatilimnocola aggregata
lpav  Lacipirellula parvula
amuc  Aeoliella mucimassa
pnd  Pirellulimonas nuda
acm  Granulicella tundricola
gma  Granulicella mallensis
trs  Terriglobus roseus
talb  Terriglobus albidus
abas  Acidisarcina polymorpha
epl  Edaphobacter paludis
adin  Alloacidobacterium dinghuense
tgi  Tunturiibacter gelidiferens
temp  Tunturiibacter empetritectus
tpsc  Tunturiibacter psychrotolerans
sus  Solibacter usitatus
cpi  Chitinophaga pinensis
chih  Chitinophaga agri
cfil  Chitinophaga filiformis
csac  Chitinophaga sancti
nko  Niastella koreensis
fgg  Flavisolibacter ginsenosidimutans
flp  Ferruginibacter lapsinanis
aup  Aureispira anguillae
mjj  Mucilaginibacter jinjuensis
srd  Spirosoma radiotolerans
spik  Spirosoma sp. KCTC 42546
spib  Spirosoma aureum
sfol  Spirosoma foliorum
senf  Spirosoma endbachense
hsw  Hymenobacter swuensis
hyj  Hymenobacter jejuensis
hrs  Hymenobacter sp. BT18
hbn  Hymenobacter busanensis
hmt  Hymenobacter monticola
hsk  Hymenobacter sediminicola
hcu  Hymenobacter cellulosilyticus
hcf  Hymenobacter cellulosivorans
fpal  Flavobacterium pallidum
fmg  Flavobacterium magnum
fsn  Flavobacterium sangjuense
ppon  Psychroserpens ponticola
bbae  Microvenator marinus
bif  Bacillus infantis
bsm  Bacillus smithii
bwh  Bacillus weihaiensis
bfd  Bacillus freudenreichii
bshi  Bacillus shivajii
baci  Bacillus sp. 1NLA3E
gst  Bacillus sp. X1(2014)
bacq  Bacillus sp. Y1
baca  Bacillus sp. S3
bhai  Bacillus haikouensis
basb  Bacillus sp. SB49
bham  Bacillus haimaensis
bacv  Bacillus sp. V3
bco  Evansella cellulosilytica
bhk  Sutcliffiella horikoshii
bcoh  Sutcliffiella cohnii
bmq  Priestia megaterium QM B1551
bmeg  Bacillus megaterium NBRC 15308 = ATCC 14581
beo  Priestia filamentosa
bfx  Priestia flexa
parh  Priestia aryabhattai
bcl  Shouchella clausii
ble  Shouchella lehensis
shua  Shouchella hunanensis
bpf  Alkalihalophilus pseudofirmus
bko  Cytobacillus kochii
cspg  Cytobacillus spongiae
csua  Litchfieldia suaedae
lgy  Lysinibacillus varians
lfu  Lysinibacillus fusiformis
lys  Lysinibacillus sp. YS11
lyb  Lysinibacillus sp. B2A1
lyz  Lysinibacillus sp. 2017
lpak  Lysinibacillus pakistanensis
lagr  Lysinibacillus agricola
lmac  Lysinibacillus macroides
lyc  Lysinibacillus sp. CD3-6
lcap  Lysinibacillus capsici
liu  Lysinibacillus irui
lyq  Lysinibacillus sp. Ag94
lyo  Lysinibacillus sp. OF-1
hhd  Halobacillus halophilus
hli  Halobacillus litoralis
vil  Virgibacillus phasianinus
vne  Virgibacillus necropolis
vik  Virgibacillus salidurans
apak  Aeribacillus pallidus
bsj  Peribacillus simplex
bmur  Peribacillus muralis
pbut  Peribacillus butanolivorans
ppsr  Peribacillus psychrosaccharolyticus
pfri  Peribacillus frigoritolerans
peri  Peribacillus sp. R9-11
perj  Peribacillus sp. JNUCC41
psyo  Psychrobacillus glaciei
sale  Salicibibacter halophilus
nmk  Neobacillus mesonae
ncm  Neobacillus cucumis
nnv  Neobacillus novalis
meku  Metabacillus elymi
mrl  Metabacillus rhizosphaerae
blen  Lederbergia lenta
raz  Rossellomorea aquimaris
rod  Rossellomorea sp. DA94
ross  Rossellomorea sp. y25
bag  Heyndrickxia coagulans 36D1
bou  Heyndrickxia oleronia
gaj  Gottfriedia acidiceleris
gka  Geobacillus kaustophilus
gte  Geobacillus thermoleovorans CCB_US3_UF5
gtk  Geobacillus thermoleovorans KCTC 3570
gtm  Geobacillus thermocatenulatus
gyc  Geobacillus sp. Y412MC61
gya  Geobacillus sp. Y412MC52
gmc  Geobacillus sp. Y4.1MC1
gej  Geobacillus sp. JS12
gth  Parageobacillus thermoglucosidasius C56-YS93
ptl  Parageobacillus thermoglucosidasius DSM 2542
parg  Parageobacillus sp. KH3-4
pcal  Saccharococcus caldoxylosilyticus
anm  Anoxybacillus sp. B2M1
anl  Anoxybacillus sp. B7M1
and  Anoxybacillus sp. PDR2
acai  Thermaerobacillus caldiproteolyticus
bbe  Brevibacillus brevis
bfm  Brevibacillus formosus
bagr  Brevibacillus agri
bchs  Brevibacillus choshinensis
bcop  Brevibacillus composti
bpab  Brevibacillus parabrevis
bhui  Brevibacillus humidisoli
bayd  Brevibacillus aydinogluensis
bbor  Brevibacillus borstelensis
brum  Brevibacillus ruminantium
breh  Brevibacillus sp. HD3.3A
ased  Brevibacillus sedimenti
brep  Brevibacillus sp. NSP2.1
pjd  Paenibacillus sp. JDR-2
pms  Paenibacillus mucilaginosus KNP414
pmw  Paenibacillus mucilaginosus K02
psab  Paenibacillus sabinae
pdu  Paenibacillus durus
pbd  Paenibacillus borealis
pod  Paenibacillus odorifer
paef  Paenibacillus sp. FSL R5-0345
paeq  Paenibacillus sp. FSL R5-0912
pste  Paenibacillus stellifer
paej  Paenibacillus sp. FSL H7-0737
pbj  Paenibacillus beijingensis
pri  Paenibacillus riograndensis
pxl  Paenibacillus xylanexedens
pyg  Paenibacillus yonginensis
pswu  Paenibacillus swuensis
pdh  Paenibacillus donghaensis
palb  Paenibacillus albus
pbac  Paenibacillus barcinonensis
prz  Paenibacillus rhizovicinus
psop  Paenibacillus sophorae
ptri  Paenibacillus tritici
ptj  Paenibacillus tianjinensis
pka  Paenibacillus kyungheensis
pmah  Paenibacillus marchantiae
pnk  Paenibacillus nuruki
ppab  Paenibacillus pabuli
pezz  Paenibacillus sp. E222
paub  Paenibacillus sp. URB8-2
afx  Alicyclobacillus mengziensis
aaco  Alicyclobacillus acidoterrestris
acyc  Alicyclobacillus cycloheptanicus
tum  Tumebacillus avium
tab  Tumebacillus algifaecis
siv  Solibacillus silvestris StLB046
ssil  Solibacillus silvestris DSM 12223
sob  Solibacillus sp. R5-41
spsy  Sporosarcina psychrophila
sow  Sporosarcina oncorhynchi
panc  Paenisporosarcina antarctica
ctc  Clostridium tetani E88
ctet  Clostridium tetani 12124569
cbo  Clostridium botulinum A ATCC 3502
cba  Clostridium botulinum A ATCC 19397
cbh  Clostridium botulinum A Hall
cby  Clostridium botulinum A2
cbb  Clostridium botulinum B1 Okra
cbf  Clostridium botulinum F Langeland
cbj  Clostridium botulinum H04402 065
cck  Clostridium carboxidivorans
ccoh  Clostridium cochlearium
cfer  Clostridium fermenticellae
cloo  Clostridium sp. OS1-26
ccak  Clostridium caseinilyticum
eha  Ethanoligenens harbinense
pfaa  Pusillibacter faecalis
say  Sulfobacillus acidophilus TPY
sap  Sulfobacillus acidophilus DSM 10332
sthr  Sulfobacillus thermotolerans
bprl  Anaerostipes hadrus
arf  Anaerostipes rhamnosivorans
acac  Anaerostipes caccae
lgg  Lachnoanaerobaculum gingivalis
ehl  Anaerobutyricum hallii
cpro  Anaerotignum propionicum
anv  Anaerotignum sp. MB30-C6
ahad  Anoxybacterium hadale
tem  Terrisporobacter hibernicus
tgc  Terrisporobacter glycolicus
tmy  Terrisporobacter mayombei
tpet  Terrisporobacter petrolearius
peb  Peptostreptococcus equinus
hpk  Halanaerobium praevalens
atb  Atopobium sp. oral taxon 416
ccn  Corynebacterium callunae
cdx  Corynebacterium deserti
cfc  Corynebacterium flavescens
acit  Arthrobacter citreus
lept  Leptolyngbya sp. 7M
vab  Vulcanimicrobium alpinum
dgo  Deinococcus gobiensis
dpd  Deinococcus peraridilitoris
dein  Deinococcus sp. AJ005
dga  Deinococcus grandis
dph  Deinococcus psychrotolerans
dah  Deinococcus aetherius
daqu  Deinococcus aquaticus
dtae  Deinococcus taeanensis
dmb  Deinococcus metallilatus
deid  Deinococcus sp. D7000
tra  Truepera radiovictrix
mrb  Meiothermus ruber DSM 1279
mre  Meiothermus ruber DSM 1279
mtai  Meiothermus taiwanensis
msv  Allomeiothermus silvanus
 » show all
Reaction
Compound
C00106  Uracil
C00429  5,6-Dihydrouracil
C02642  3-Ureidopropionate
C00099  beta-Alanine
C00178  Thymine
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C01205  (R)-3-Amino-2-methylpropanoate
RModule
RM024  Pyrimidine degradation
Reference
  Authors
Van Kuilenburg AB, Stroomer AE, Van Lenthe H, Abeling NG, Van Gennip AH
  Title
New insights in dihydropyrimidine dehydrogenase deficiency: a pivotal role for beta-aminoisobutyric acid?
  Journal
Biochem J 379:119-24 (2004)
DOI:10.1042/BJ20031463
Reference
  Authors
Nyhan WL
  Title
Disorders of purine and pyrimidine metabolism.
  Journal
Mol Genet Metab 86:25-33 (2005)
DOI:10.1016/j.ymgme.2005.07.027
Reference
  Authors
West TP
  Title
Pyrimidine base catabolism in Pseudomonas putida biotype B.
  Journal
Antonie Van Leeuwenhoek 80:163-7 (2001)
DOI:10.1023/A:1012275512136
Reference
  Authors
Hidese R, Mihara H, Kurihara T, Esaki N
  Title
Pseudomonas putida PydR, a RutR-like transcriptional regulator, represses the dihydropyrimidine dehydrogenase gene in the pyrimidine reductive catabolic pathway.
  Journal
J Biochem 152:341-6 (2012)
DOI:10.1093/jb/mvs079
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