KEGG   Alicyclobacillus acidoterrestris: K1I37_10530
Entry
K1I37_10530       CDS       T08106                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
aaco  Alicyclobacillus acidoterrestris
Pathway
aaco02024  Quorum sensing
aaco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aaco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K1I37_10530 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    K1I37_10530 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aaco03019]
    K1I37_10530 (hfq)
   03036 Chromosome and associated proteins [BR:aaco03036]
    K1I37_10530 (hfq)
Messenger RNA biogenesis [BR:aaco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     K1I37_10530 (hfq)
Chromosome and associated proteins [BR:aaco03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    K1I37_10530 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: UNO47190
UniProt: T0CKM3
LinkDB
Position
2225128..2225385
AA seq 85 aa
MSKQQINIQDTFLNQVRKDRIPVIVYLVNGFQIRGVVRAFDNFTIVVEAEGKQQMIYKHA
ISTFIPMRQVNLAAEAASTDADEQA
NT seq 258 nt   +upstreamnt  +downstreamnt
atgagcaagcagcaaattaatatccaagacacatttttgaatcaagtgcgcaaggatcgg
ataccggtcattgtatatcttgtgaatggctttcaaattcgcggtgtcgtccgcgcgttc
gacaattttaccatcgtcgtcgaggcggagggcaaacagcagatgatctacaagcacgcc
atttccacgtttatcccgatgcgtcaggtgaatcttgcagccgaagctgcgtcgaccgac
gctgacgagcaagcgtaa

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