Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_3049
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Entry
TC41_3049 CDS
T01821
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TC41_3049 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aad03021
]
TC41_3049 (rpoB)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_3049 (rpoB)
Enzymes [BR:
aad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TC41_3049 (rpoB)
Transcription machinery [BR:
aad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TC41_3049 (rpoB)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TC41_3049 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
WHD_GTF3C1
Motif
Other DBs
NCBI-ProteinID:
AEJ44934
UniProt:
F8ILI0
LinkDB
All DBs
Position
complement(2883106..2886645)
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AA seq
1179 aa
AA seq
DB search
MTVLQGHMVKYGWAERRSYARIREVLDLPNLIEIQQKSYEWFLREGLRETFADISPITDF
TGNLVLEFVDYSLGEPKYDVEESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFLGDFPL
MTETGTFIINGAERVIVSQLVRSPSVYYSSKIDKNGKRAFAATVIPNRGAWLEFETDAKD
VVYVRIDRTRKLPITVLLRALGLSSDAEIIELLGEDEYLQNTLDKDTTDSTERALIEIYE
RLRPGEPPTVENARALLASRFFDPKRYDLAAVGRYKINKKLHLKNRLLNQRLAETLVDEE
TGEIIAEAGTVLDRRTLDRIIPRLSGKVGRFTIRGTRDLFEQDEIPLQMVKIFSPAEDGK
ILHVISNGELPADVKYITPSDIIAAISYFFNLLRGVGTTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVRERMSIQDASAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAE
LTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYARVNE
YGFIETPYRRVDPETGVVTDQIDYLTADEEENYLIAQANEPLTEDGHFVAEEITVRSRED
VITVSRDRIDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLVTDSPLVG
TGMEYQAAKDSGVCVVSKHNGVVERVTAREIWVREEAVVDGQVVKGNVHKYKLIKFARSN
QNTCLNQRPIVREGDRVKVGDILADGPATQNGELALGRNVLVAFMTWEGYNYEDAILISE
KMVKEDVYTSIHIEEYEIEARDTKLGPEEITRDIPNVGEDALKNLDERGIIRIGAEITTN
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGAGIVVDVKVFTRENGD
ELPAGVNQLVRVYVAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFLEDGTPVEIVLNP
LGVPSRMNIGQVLETHLGMAAKVLGLKMATPVFDGAKPEDVFETLREAGLPEDGKQVLYD
GRTGEPFENRVTVGYVYMMKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSGDEREIEMKEMDDDEDSPDKLNLNLEYNEVGD
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgacggttttgcagggacacatggtcaagtacggatgggcggagcgccgcagctacgcg
cgcattcgcgaggtcctcgatctcccaaacctcatcgagatccaacagaagtcgtacgag
tggttcctgcgggagggcctgcgcgagacgttcgcggacatctctcccatcacggacttc
accgggaatcttgtgcttgagttcgtggactacagcctcggcgagcccaagtacgacgtg
gaagaatcgaaggagcgcgatgtgacgtatgcggcgccgcttcgcgtgaaggttcgcctt
ctcaacaaggagacgggcgaggtcaaagagcaagaggtgtttctcggcgatttcccgctc
atgaccgagacgggcaccttcatcatcaacggcgcggagcgcgtcattgtgagccagctt
gtccgttcccctagcgtctattatagcagcaagatcgacaagaatggcaaacgcgcgttc
gctgcgacggtcattccgaaccgcggcgcgtggctcgagtttgagacagacgcgaaggac
gtcgtgtacgtccgaattgaccgcacgcgcaagctgcccatcacagtgctgcttcgggcg
ctgggattgtcgtctgacgccgagatcatcgagctgttgggcgaggacgagtacctgcag
aacacgctggacaaggatacgacggactcgacggagcgggcgctcatcgagatctacgag
cggctgcgccccggtgagccgcctacggtcgagaacgcgcgtgccctgcttgcatcgcgg
ttcttcgatcccaagcggtacgatctcgccgcggtcggccggtataagatcaacaaaaag
ctccacctgaaaaatcgcctgctgaatcagcggctggcggagacgctcgtcgacgaggag
acgggtgagatcatcgcggaagccgggacagtgctggatcgccgcacgctggatcggatc
atccctcgtctgtctggcaaggtcgggaggttcaccatccgaggcacgcgggatttgttt
gaacaggacgagatcccgttgcagatggtgaagattttcagcccggcagaggacggaaag
atcttgcacgtcatatcgaacggcgaactgccagcggacgtcaaatacatcacgccgtcg
gacatcatcgccgccatctcgtacttcttcaacctgttgcgcggcgtcgggacgacggac
gacatcgatcatctgggcaaccggcgcctgcgctcggtgggcgagctgttgcaaaaccag
ttccgcatcgggctctcccgcatggagcgcgtggtccgcgagcgcatgtccatccaggac
gcgagcgccatcacgccgcaggcgctgatcaacattcgcccggtgattgcggccatcaag
gagttctttgggtccagccagctttcgcagttcatggatcagacgaatccgctcgccgag
cttacgcacaagcggcgcctctcggcgcttggccccggtggcctcacgcgcgagcgggcc
ggtttcgaggtgcgcgacgtgcactactcgcactacggccgcatgtgccccatcgagacg
cccgaaggcccgaacatcggtctcatcaactcgctctcgacctacgctcgggtgaacgag
tacggcttcatcgagaccccataccgacgcgtcgatccagagacgggcgtggtgacggat
cagattgactacctgacggcggatgaggaggaaaactacctcatcgcgcaggcgaacgag
ccgctgaccgaggacggccatttcgtggccgaggagatcacggtgcgctcgcgcgaagac
gtgatcaccgtgagccgcgatcgcatcgactacatggacgtctcgccgaagcaggtcgtg
tccgtggcgacggcgctcattccgttcctcgagaacgacgacgcgaaccgcgcgctgatg
gggtcgaacatgcagcgccaggcggtgcctttgctcgtgaccgattcgccgctcgtgggg
acagggatggagtaccaagcggcgaaggactctggtgtctgtgtggtttcgaagcacaac
ggcgtcgtggaacgcgtaacggcgcgcgagatctgggtgcgcgaggaagctgtcgtggac
gggcaggtcgtgaaaggcaacgtccacaagtacaagctcatcaagttcgcgcgttcgaac
cagaacacctgcctgaaccagcggcccattgtgcgcgagggcgatcgcgtcaaagtcggg
gatattctcgcggatggcccggcgacccaaaacggcgagctggcgctcgggcggaacgtg
ctcgtcgcgttcatgacctgggagggttacaactacgaggatgcgattctcatctccgag
aagatggtgaaggaggacgtctacacgtccattcacatcgaggagtacgagattgaggcg
cgcgacacgaagctcgggcctgaggagattacccgcgacattccgaacgtcggcgaagac
gcgctcaaaaacctcgacgaacgcgggatcatccgcattggggcggagatcaccacgaac
gacatcctcgtcgggaaggtgacgccgaagggcgtgacggagctcacggcggaagagcgg
ctgttgcacgcgattttcggcgagaaggcccgcgaggtgcgagacacgtctctgcgcgtg
ccgcatggcggtgctggcattgtcgtagacgtcaaggtgttcacgcgcgagaacggcgac
gagttgcccgctggcgtgaaccagttggtgcgcgtgtacgtcgcgcagaagcgcaagatc
tcggaaggcgacaagatggccggacgccacggcaacaagggcgtggtggcacgcatcctg
ccggaagaggatatgccgtttttggaggatgggacgccggtcgagatcgtgctgaatccg
ctcggcgtgccgtcgcgtatgaatatcggtcaggtgctggagacgcacctgggcatggcc
gcgaaggtgctggggctgaagatggcgacgcccgtgtttgacggcgccaagccggaggac
gtgttcgaaacgcttcgcgaggcgggcttgcctgaggacggcaagcaggtcctgtacgac
ggccggaccggcgaaccgttcgaaaaccgcgtcaccgtgggatacgtgtacatgatgaag
ctgcaccatctggtggacgacaagatccacgcgcggtccacgggtccgtactcgctcgtc
actcagcagccgctcggaggcaaggcccagttcggcggccagcggtttggcgagatggag
gtctgggcgctagaggcgtacggcgcggcctacaccttgcaggagcttctcaccgtcaag
tcggacgacgtggtggggcgcgtgaagacgtacgaggccatcgtcaagggcgagaacgtg
ccggagccaggtgtgccggagtcgttcaaggtgctcatcaaggagctccagagcctgggg
atggacgtgaagatcttgagcggcgacgagcgcgagatcgagatgaaggagatggacgac
gacgaggacagccccgacaagctcaatctgaacctggagtacaacgaggtcggcgattga
DBGET
integrated database retrieval system
