Alteromonas algae: ACOJRU_15895
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Entry
ACOJRU_15895 CDS
T11409
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aale Alteromonas algae
Pathway
aale03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aale00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACOJRU_15895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aale03021
]
ACOJRU_15895 (rpoB)
03400 DNA repair and recombination proteins [BR:
aale03400
]
ACOJRU_15895 (rpoB)
Enzymes [BR:
aale01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACOJRU_15895 (rpoB)
Transcription machinery [BR:
aale03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACOJRU_15895 (rpoB)
DNA repair and recombination proteins [BR:
aale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACOJRU_15895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XQM96683
LinkDB
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Position
complement(3587362..3591390)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFEKVNIRIDKDKLMME
VVPDRLRGETAQFDIIDGDGNVVVESGRRISARHTRALEKAGLTELEVPADYLIGRVFSA
TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFENLFFSEERYDLSSVGRMKFNRRLGREELIGSGT
LAKEDIVSVMKQLITIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGIV
SEEIDYLSAIEEGQYAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVAEEEMLPGEAGIDIYNLTKYTRSNQNTCINQRPTCSVGDPIVA
GDVLGDGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALGKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQNGLLRAGVDQAKLDSVPREKWFEIALSDEDAQLELDQIAEQHA
EIKAAFDKKFEGKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHMGMAAHGLGVKIDRMLKEHEEMQ
KLRSFLKEVYELGESHQEVDIDSFTDHEVKRLAENLRKGVPIATPVFDGARESEIKEMLK
LADIPESGQITLFDGRTGNSFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtactggaaatcccgtatcttctttcaattcagcttgattctttcaaaaagttcattgag
atcgacgccgatgctcaatacggcttggaagcagcatttcgttccgtttttccaattaaa
agttactcaggtaattcagagcttcaatatgtaagctatcgcctgggagagccagttttt
gacgtgaaagaatgtcaaattcgcggcgtaactttctctgctccgttaagagtaaaacta
cggttagtgttgttcgacaaagacgcagccccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggtgagattccattgatgacagagaacggtacgttcgttatcaacgga
acagagcgtgttatcgtatctcagttacaccgttcacctggtgtattctttgatcacgat
aaaggcaaaactcactcgtctggtaaagtgctttataacgcacgtgttattccataccgt
ggttcgtggttagattttgaatttgacccgaaagataacttgttcgtacgtatcgaccgt
cgtcgtaagttgccagcaactattatcttacgcgcgttagaaatgacgtcagaggaaatc
ctcgacacgttcttcgaaaaagttaacatccgtatcgacaaagataagttgatgatggaa
gtagttcctgaccgtttacgcggtgaaactgctcaattcgatatcatcgatggcgacgga
aacgttgttgtggaatctggtcgtcgtatttctgctcgtcacactcgcgctttagaaaaa
gcgggattgacggaattagaagtaccagcagattaccttatcggccgtgtattctctgcg
acatacgtaaatgaagacaccggcgaagtgattgtaagtgcaaatgacgaacttacgctt
gagaacctagcggcgttaagccaagcgggtatcaaagagttcgaaacactttacatcaac
gagttagaccacggttcttacatctcagatacattgcgtattgattcttcaactaaccgc
ctagaagcgctagttgagatttatcgtatgatgcgtcctggtgagccaccaacaaaagac
gcagcagaaacattgtttgagaacttgttcttctctgaagagcgttacgacttgtcatct
gtgggtcgtatgaagttcaaccgtcgtttaggccgtgaagaacttattggttctggtacg
ttggctaaagaagacatcgtatcggtaatgaagcaacttattacgattcgtgatggtaaa
gacgaagttgatgatatcgatcaccttggtaaccgtcgtattcgttcagttggtgaaatg
gctgaaaaccaattccgtgttggtttagttcgcgtagagcgtgcggttaaagagcgccta
agtttaggtgaccttgacaacatcatgcctcaagacctcattaacgctaagcctatttcg
gcagcggttaaagagttcttcggttcatcacagctatctcagttcatggaccaaaacaac
ccgctatcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtcttaca
cgtgaacgtgcaggctttgaggttcgagacgtacacccgacccattacggtcgtctgtgt
ccaatcgaaacaccggaaggtccgaacatcggtcttattaactcattggcaagctttgcg
cgtaccaatgatttcggtttccttgaaacgccattccgtcgcattgtcgatggtattgtt
agcgaagaaattgattacctatcagcaatcgaagaaggccaatacgcaatcgctcaggcg
aatattgcattgaccgaagccggtgagcttgttgacgacctaataccttgtcgtcaccgc
ggtgaaacgaccttgatgccaaaagaagacatcaaatacatggacgtgtcaccacagcaa
atcgtttcaattgctgcaagcattatcccgttccttgaacacgatgatgctaaccgtgca
cttatgggtgcaaacatgcaacgtcaagcagtacctacattgcgcgctgataagccgctt
gttggtaccggtatggaaagaactatcgcggtagactcgggtgtaaccgtagttgctaaa
cgtggtggtgttgttgattatgtcgacgctagccgtatcgttattaaagtagctgaagaa
gaaatgcttccaggtgaagcaggtatcgacatctacaacttgacaaaatacacacgttca
aaccaaaacacgtgtatcaatcagcgtccaacgtgtagtgttggcgacccgattgttgca
ggtgacgtgctaggcgatggtccttcaacagaccttggtgaccttgcgcttggccagaac
atgcgtatcgcgttcatgccttggaacggttataacttcgaggattcaatccttatctct
gagcgtgtagctcaggaagaccgtttcacgactattcatattcaagaacttagctgtatt
gctcgtgataccaagcttgggccagaagaaatttcttctgacatcccgaacgttggtgag
tcagcactaggtaagcttgacgaatcaggcgtggtatatatcggtgctgaagtaaaaggc
ggcgatatcctagtaggtaaagtgacacctaaaggtgaaacacaacttacgcctgaagag
aaactattaagagctattttcggcgaaaaagcgtctgacgtaaaagatacgtcactacgt
gtgcctaactctgttcacggtacggttatcgacgttcaagtctttactcgcgacggtgtt
gagaaagataagcgcgcgctagaaattgaagacatgcaacttcgtcaggttaagaaagac
cttaccgatgagttcgagattcttgctgacggtatttttgctcgtgcacaaaacggattg
cttcgtgctggtgttgatcaagctaagcttgacagcgtaccgcgtgaaaagtggtttgag
attgcattgagtgatgaagatgcacagctagagcttgatcaaattgctgaacagcatgct
gagattaaagccgctttcgataagaagttcgaaggtaagcgtcgtaagattacgcaaggc
gatgatttagcaccgggtgttcttaagattgttaaggtttacctagcggttaaacgtcac
atccagccaggtgataaaatggccggacgtcacggtaacaaaggtgttatctcaactatc
cagcctgttgaagacatgccatacgatgaaaacggtacgccggtagacatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaacacatatgggtatg
gctgcgcacggtcttggtgtgaaaatagatcgtatgcttaaagaacatgaagagatgcag
aaactgcgtagcttcttgaaagaagtatatgagctaggtgaaagtcaccaggaagttgac
attgatagtttcactgatcatgaagtgaagcgccttgcagagaacctgcgtaaaggtgta
cctatcgcaacgcctgtgttcgacggtgctcgtgaatctgaaatcaaagaaatgctgaag
cttgctgatattccagaaagcggtcagattactttgttcgacggtcgaactggtaactca
tttgagcgacctgtaacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaagatgcacgcgcgttctactggttcatacagccttgttacacagcaacctcttggt
ggtaaagcacagtttggtggtcagcgcttcggtgagatggaagtatgggcacttgaagca
tacggtgctgcatatacccttcaggaaatgcttactgttaagtcagatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgaccacagaatggagcctggcatgcca
gaatccttcaacgtattacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa
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