Advenella alkanexedens: Q3V95_01535
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Entry
Q3V95_01535 CDS
T09248
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaln
Advenella alkanexedens
Pathway
aaln03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaln00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q3V95_01535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaln03021
]
Q3V95_01535 (rpoC)
03400 DNA repair and recombination proteins [BR:
aaln03400
]
Q3V95_01535 (rpoC)
Enzymes [BR:
aaln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q3V95_01535 (rpoC)
Transcription machinery [BR:
aaln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q3V95_01535 (rpoC)
DNA repair and recombination proteins [BR:
aaln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q3V95_01535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WKU19748
LinkDB
All DBs
Position
331368..335624
Genome browser
AA seq
1418 aa
AA seq
DB search
MKGLLGLFKQISQDEQFDVIKIGIASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVTKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFTALM
GAEAIRELLRTIDIDREAEALRAELKATSSDAKIKKISKRLKVIEGFQKSGIKPDWMILE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLSDMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LLLHQCGLPKLMALELFKPFIFNRLETMGLATTIKAAKKLVEAQEAVVWDILEEVIRQHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPASGEPSIVPSQDIVLGLYYTTRERINGKGEGLFFADLAEVYRAYDNG
VVELQSRITVRLNEYVKDENDEWQPVLRRFETTVGRAMLSEILPKGLPFSVLNRALKKKE
LSRLINQSFRRCGLRDTVIFADKLMQNGFRLATRAGISIAMGDMVIPTNKEEILAQASGE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDKIGKAMMEQLATEPVVDRFGDTVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITETDCGTTQGYVMKALLEGGEVIEPLRDRIL
GRVTAVDIVNPDTQETVITAGTMLDEDIVELIDKLGVDEVKIRTPLTCETRHGLCAHCYG
RDLGRGYLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMASAVETKSAGTVGF
TSSMRYVTNAKNERIAISRSGEIVIFDDNNRERERHKIPYGATIMVGDNEEVKAGARLAT
WDPLTRPIVSEYTGTVRFENIEEGVTVAKQVDEITGLSTLVVITPKTRSGKIMMRPQIKL
LNETGDEVKIAGTDHSVNISFPVGALITVRDGQQVSVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGILADVTGTVSFGKDTKGKQRLVLTDIDGIAHEFLIPKEKQVMVHDG
QVVNQGELIVDGPADPHDILRLKGIEQLATYVVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFIPGEQVERSELLNENDRMIAENKIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHHARKAKEEVERAERV
AARAQENPFEEPTSAPVSLESIFAPFNNTSLDEPPAAE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaagggattactaggtttattcaaacaaatctcgcaagatgaacaatttgatgtcatc
aagatcgggattgcttctccagaaaaaatccgttcgtggtcttatggtgaagtgcgcaaa
cccgaaaccatcaactatcgtacgttcaaacccgaacgtgatggtttgttttgtgccaaa
atttttggcccaatcaaagattatgaatgtctttgcggcaaatacaaacgtctgaaacac
cgtggtgtcatttgtgaaaaatgcggtgttgaagtgactgttaccaaggttcgtcgcgaa
cgtatgggtcatattgaactggccagcccggttgcgcatatctggttcctgaagagtttg
ccatcccgcttgggcatggtgcttgacatgaccctgcgcgatatcgagcgggttctgtac
ttcgaggcatggtgtgttattgaaccgggcatgacgcctctaaaacgcggccagatcatg
tctgacgatgacttcctggccaaaacggaagagtacggtgatgatttcaccgccctgatg
ggtgctgaagcgattcgcgaactgctgcgcacgattgatattgatcgtgaagcggaagcc
ttgcgtgccgaactgaaagcaacctcttccgatgccaagatcaagaaaatctccaagcgc
ctgaaggtgattgagggcttccagaaatcaggtatcaagcccgactggatgatcctggaa
gtgctgcctgtgttgcctccggatttgcgtccgttggtaccgctggatggtggccgcttc
gcgacgtcagacctgaacgatctgtatcgccgtgttattaaccgtaataaccgtctgaaa
cgcctgatcgaactgaaagcacccgatatcatcctgcgtaacgaaaaacgcatgctgcag
gaagcggtagactcgttgctggataacggccgtcgcggtaaagccatgacgggcgccaac
aaacgtcagctgaaatccctgtcagacatgatcaagggtaaaagcggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggccgttcggtgattgtggtgggtccgcag
ctgcttctgcatcaatgcggtctgcccaagttaatggcacttgaactgtttaaaccgttc
attttcaaccgtcttgaaaccatgggtctggcgaccaccatcaaggcagccaagaaactg
gttgaagcccaagaggccgtagtatgggatattcttgaagaagtcattcgccagcacccc
gtaatgcttaaccgcgcaccaacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaggcgattcagctgcacccgctggtttgtgccgcttttaacgccgac
tttgacggtgaccagatggcggttcacgtgccattgtcactagaggcacagctggaagca
cgtactttgatgctggcttccaacaacgtgttgttccctgccagtggcgagccttccatt
gttccttcacaggatatcgtgctgggcttgtattacacaacccgtgagcgtattaacggc
aaaggtgaaggcctgttctttgctgatctggccgaggtgtatcgtgcttacgacaatggt
gtggttgaactgcaatcacgcattaccgtacgtctgaacgaatatgtcaaagacgaaaat
gatgaatggcaacccgtgttgcgccgttttgaaacaacggtcggccgcgccatgttgtct
gaaatcctgcctaaaggcctgccgttttcagtcctgaaccgggcgctgaagaaaaaagaa
ctttcacgcctgattaaccagtctttccgtcgttgcggcttgcgtgatacggttattttt
gctgacaaattaatgcagaacggtttccgtctggctacccgggcaggtatttccattgcc
atgggcgatatggttattccaaccaacaaggaagaaatccttgcccaggccagcggcgaa
gtcaaggaaattgacaagcagtattcatcaggtctggtaaccgcccaagagcgctacaac
aacgtggtcgatatctggggcaaggctggtgacaaaatcggcaaggccatgatggagcaa
ctggcaaccgaacctgtcgtggatcgttttggtgataccgttcgccaggaatcattcaac
tccatctatatgatggctgattccggtgcccggggttctgccgcacagattcgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttcaattattgaaacgcccattacc
gcgaacttccgtgaaggtctgaacgttcttcagtactttatttcaacccacggtgcccgt
aaaggtttggctgataccgcactgaaaacggcgaactcgggttacctgacccgtcgtctg
gtggacgtgacccaggacctggtgattaccgaaaccgattgcggtaccacccaaggttat
gtgatgaaagcgttgctggaaggcggtgaggttatcgaaccattgcgcgatcgtattctg
ggtcgtgtaaccgcggtggatatcgttaatcccgatacccaggaaaccgtgattactgcc
ggtaccatgcttgatgaagatatcgttgagctgatcgacaaactgggcgtggacgaagtc
aagatccgtacaccgctgacatgtgaaacacgtcatggattgtgtgcccactgttatggt
cgtgacctgggtcgtggttatctggttaataccggtgaagccgtgggggttattgccgcc
cagtcaattggggagccaggtacccaactgacgatgcgtaccttccacattggtggtgcc
gcttctcgtgcagccatggcctctgcggttgaaaccaaatcagccggtacggttggcttt
accagctccatgcgttatgtcaccaatgccaagaacgaacgcattgccatttcccgttcc
ggtgaaattgttatttttgatgataacaaccgtgaacgtgaacgtcataaaattccatat
ggcgccaccatcatggtgggtgataatgaagaggtcaaggctggtgcacgcctggcaaca
tgggatccgttaacccgtccgattgtttctgaatacaccggaactgtccgcttcgagaat
attgaagagggtgtaaccgttgccaaacaggttgatgaaattaccggcttgtccacattg
gttgtgattacaccgaagacgcgtagtggcaagatcatgatgcgtccgcaaatcaagctt
ctgaatgaaaccggtgacgaagtcaagattgccggtaccgaccattccgtgaatatttca
ttcccggtgggtgccttgattacggtgcgtgatggacagcaggtttcggtgggtgaggtt
ctggcgcgtattccgcaggaatcacagaaaacccgagatattaccgggggtctgccacgt
gtggccgaattgtttgaagcccgttcacccaaagatgccggtattctggctgatgtgacc
ggaaccgtttcttttggtaaggacaccaagggtaaacagcgtctggtattgaccgacatt
gacggtattgcccatgaattcctgattcccaaagagaaacaggtcatggttcacgacggt
caggtggttaaccagggtgagctgattgttgacggaccggccgatccgcacgatatcctt
cgtctgaaaggtattgagcaactggccacctatgtagttaacgaggttcaggacgtttat
cgtttgcaaggtgtgaaaattaacgacaagcacattgaagtgattgttcgtcaaatgctg
cgccgcgtaaacattgttgatgcgggtgatacatcattcatcccgggtgaacaggtcgag
cgttcagaactgctgaatgaaaacgatcgcatgattgccgaaaacaaaattccggccact
tatgagaacgttctgttgggtatcacgaaagcttcgctttctactgactccttcatttca
gcggcttcgttccaggaaacaacccgtgttcttaccgaagcagccatcatgggcaaacgt
gatgaactgcgcggcctgaaagaaaacgtgattgtgggtcgcctgattcctgccggtacc
ggtcttgcttaccatcatgcacgtaaagcgaaagaagaagtggagcgtgcagaacgtgtg
gcagcccgtgcccaggaaaatcctttcgaagaaccgacttcagcaccggtttccctggaa
agtatttttgcaccgtttaacaatacatctttggatgaaccccctgcagcagaataa
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integrated database retrieval system
