Alternaria alternata: CC77DRAFT_1100242
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Entry
CC77DRAFT_1100242 CDS
T05291
Name
(RefSeq) pre-mRNA-splicing factor clf1
KO
K12869
crooked neck
Organism
aalt
Alternaria alternata
Pathway
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_1100242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_1100242
03036 Chromosome and associated proteins [BR:
aalt03036
]
CC77DRAFT_1100242
Spliceosome [BR:
aalt03041
]
Complex B
Other components
Prp19-related factors
CC77DRAFT_1100242
Complex C
CC77DRAFT_1100242
Chromosome and associated proteins [BR:
aalt03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
CC77DRAFT_1100242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_14
HAT
Suf
TPR_19
TPR_17
UTP6_C
TPR_16
TPR_CcmH_CycH
HAT_Syf1_M
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
29115647
NCBI-ProteinID:
XP_018379457
JGI:
1100242
UniProt:
A0A177D3G8
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MEATRGPPRVKNKAAAAVQISAEQLLREAVDRQDEKLKAPTQRFADIEELHEFQGRKRKE
FEDYVRRNRINMNNWMRYASWELEQKEFRRARSIFERALDVDSTSVPLWLRYIESEMKHR
NVQHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIDGARSVFERWMQWEPEEAAWSSYI
KLEKRHGEFERCRAIFERFTVVHPEPKNWIKWAKFEEENGTSDLVRDVYGTAVTTLGDEF
MDEKLFMAYAKFEARLKELERARAIYKFALDRMPRSKSVNLHKAFTTFEKQFGDRDGIED
VILSKRRVHYEEQIKENPKNYDSWIDFARLEETSGNPDRVRDVYERAIAQIPPTQEKRHW
RRYIYLWLFYAVWEETASHDIERTRQIYQECIRLLPHKRFTFGKVWLAFAHFLVRQGELT
AARKLLGQSLGMCPKDKLFKGYIELEMKLFEFNRCRQLYTKYIEWNGSNCHTWINFANLE
RGLDDLDRARSIFEIAVEQTDMDMPEVLWKAYIDFEEGEGEYERTRALYERLLEKTDHVK
VWLSYAQFELGVPDETTAEDDDDTISDAAKARARNIFDRAHGKLKERDLKEDRVALLSAW
KAFEDVHGTEEDKKKIEGQMPRKVKKRRKLDDDSFEEYVDYVFPADDESAAKLSKLLANA
QKWKMAQAQAAQAAQGAGGENGDGE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaacacgaggacccccgcgggtcaagaataaggccgcagcggctgtccagatc
tccgccgaacagctgcttcgagaagccgtcgaccgtcaagatgagaagctcaaggcgcca
acgcaaaggtttgcggatattgaagagctccatgagttccaaggtcgcaagaggaaggaa
ttcgaggactatgtacggcggaaccgcatcaacatgaacaactggatgcgctatgcttcc
tgggaactcgagcagaaggagttcaggcgcgcacgatccatcttcgagagagctttggac
gtagactccacgtcagtcccattatggctgaggtacatcgagagcgagatgaagcatcgc
aacgtccagcatgcccgcaaccttctcgatcgcgccgttaccattctcccacgagtcgac
aagctatggtacaagtatgtctacatggaggagacgcttggtaacattgacggtgcccgc
tcagtcttcgaacgctggatgcaatgggagccggaagaggccgcatggagctcatacatc
aagctggagaagcgccacggcgaattcgagcgatgtcgcgcaattttcgagcgctttaca
gttgtacaccccgaacccaagaactggatcaaatgggccaagttcgaggaggaaaacggc
accagcgatcttgtacgcgacgtctacggcaccgccgtcacgaccctcggagatgagttc
atggacgagaagcttttcatggcatatgcaaagttcgaggcaagactgaaagagctggaa
cgtgctcgagccatttacaaattcgccctcgatcgcatgccaaggtcgaaatcggttaat
ctacacaaggcctttacgacgttcgagaagcaattcggagaccgggacggtattgaagat
gttatcttgtctaaacggcgggttcattatgaggagcagattaaggagaacccaaagaac
tatgatagttggattgatttcgccaggctggaagagacgtctggtaaccccgaccgagtg
agagacgtttacgaaagagccattgctcaaattcccccaacgcaagaaaagcgccattgg
agacggtacatatatctctggctcttctacgccgtctgggaagaaactgcatctcacgac
attgaacgaacacgccaaatttaccaagagtgcatacgcctgctcccccacaaacgcttc
acattcggcaaagtgtggttagcattcgctcatttcctggttcgacaaggtgaactcacc
gctgcacgcaaactactcggtcagagtttgggtatgtgtccaaaagacaagctgttcaag
ggctacattgagctagaaatgaagctcttcgagttcaatcgctgccgccagctctacaca
aagtatattgaatggaacggctcaaactgccatacctggatcaactttgccaacctagag
cgcggtctcgatgatctcgaccgcgcacgcagcatcttcgaaatagcagtcgaacaaact
gacatggatatgccggaagtgctgtggaaagcatacatcgactttgaagagggagagggt
gaatacgagcgtacacgcgcattgtacgagaggttgttggagaagacggaccatgtcaag
gtgtggctgtcttatgcgcaattcgagttgggagttccagatgagaccacagcagaagac
gacgacgacacaatcagcgacgccgccaaagcccgtgcgcgcaacatcttcgacagagcg
catggcaagctcaaggaacgcgacctcaaggaagaccgtgtggcactgctcagcgcctgg
aaggcgtttgaggatgtacatggtaccgaggaagacaagaagaagattgagggacagatg
ccaagaaaggtcaagaagaggaggaagctcgacgacgacagcttcgaggagtatgtcgat
tacgtcttccctgcggacgacgagagcgctgcgaaattgtcaaagttgttggccaatgcc
cagaagtggaagatggcgcaggcgcaggcagcgcaggcagcgcaaggtgcgggaggagag
aatggggacggcgagtaa
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