Arvicola amphibius (Eurasian water vole): 119818555
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Entry
119818555 CDS
T08327
Symbol
Scn2a
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 2 subunit alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
119818555 (Scn2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119818555 (Scn2a)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119818555 (Scn2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
IQ
HB_ELP1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
119818555
NCBI-ProteinID:
XP_038191987
LinkDB
All DBs
Position
7:complement(17968578..18051572)
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AA seq
2006 aa
AA seq
DB search
MAQSVLVPPGPDSFRFFTRESLAAIEQRIAEEKAKRPKQERKDEDDENGPKPNSDLEAGK
SLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAISRFSATSALYILTPFNPIRK
LAIKILVHSLFNVLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENSTFEINITSFFNNSL
DWNGTAFNRTVNMFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGI
GVFSESSSVASKLSSKSEKELKNRRKKKKQKEQAGEEEKEDAVRKSASEDSIRKKGFRFS
LEGSRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFKGRVKDVGSENDFADDEHST
FEDNDSRRDSLFVPHRHGERRPSNVSQASRASRGIPTLPMNGKMHSAVDCNGVVSLVGGP
SALTSPVGQLLPEGTTTETEIRKRRSSSYHVSMDLLEDPTSRQRAMSMASILTNTMEELE
ESRQKCPPCWYKFANMCLIWDCCKPWLKVKHLVNLVVMDPFVDLAITICIVLNTLFMAME
HYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELG
LANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRWVLCGEWIETMWDCMEVAGQTM
CLTVFMMVMVIGNLVVLNLFLALLLSSFSFYNLAATDDDNEMNNLQIAVGRMQRGIDFVK
RKIREFIEKAFVRKQKALDEIKPLEDLNNKKDSCISNHMTIEIGKDLNYLKDGNGTTSGI
GSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENNTEEFSSESDMEESKEKLNATS
SSEGSTVDIGAPAEGEQPEAEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRK
TCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLL
KWVAYGFQMYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSV
VNNFSECQALIESNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVEL
QPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEM
TNILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPG
SSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFY
EVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGESGEMDALRVQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIVIQRAYRRY
LLKQKVKKVSSIYKKDKGKEGEGTPIKEDIVIDKLNENSTPEKTDVTPSTTSPPSYDSVT
KPEKEKFEKDKSEKEDKGKDIRESKK
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccgccaggacctgacagcttccgcttctttaccagggaa
tcccttgctgctattgaacaacgcattgcagaagagaaagccaagagacccaaacaggaa
cgcaaggacgaagatgacgaaaatggcccaaagccaaacagtgacttggaagcaggaaaa
tccctcccttttatttacggagacattcctccagagatggtgtcagagcccctggaggac
ctggacccctactatatcaataagaaaacctttatagtattgaataaagggaaagcaatc
tctcggttcagtgccacctccgccctgtacatcctaactcccttcaaccccattagaaaa
ttagctattaagattttggtacattctttattcaatgtgctcatcatgtgcacgattctt
accaactgtgtatttatgaccatgagtaatcctccagactggacaaagaatgtggagtat
actttcacaggaatttatacttttgaatcacttattaaaatactcgcaaggggcttttgt
ctagaagatttcacatttctacgggacccctggaactggttggacttcacagttattact
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacgttcaga
gttctccgagcattgaaaaccatttcagtcattccaggcctgaagaccatcgtgggggcc
ctgatccagtcggtgaagaagctgtctgacgtcatgatcctcacggtgttctgtctcagt
gtctttgcgctaatcgggctgcagctgttcatgggcaacctgaggaataaatgcttgcag
tggcccccagaaaactctacctttgaaataaatatcacttccttctttaataattcattg
gactggaacggtactgccttcaatagaacagtgaacatgtttaactgggatgaatacatt
gaagataaaagtcacttttattttctggaagggcagaacgatgctctgctttgtgggaac
agctctgacgcaggccagtgtcctgaagggtacatctgcgtgaaggctggaagaaacccc
aactacggctacacgagctttgacacattcagctgggccttcttgtcattatttcgtctc
atgactcaagacttctgggaaaacctttatcaattgaccctgcgtgctgccgggaaaaca
tacatgatattttttgtgctggtcattttcttgggctccttctacctgataaacttgatc
ctggctgtggtggccatggcctatgaggagcagaatcaggccaccttggaggaggctgag
cagaaagaggcggagtttcagcagatgttggagcagctgaagaagcagcaggaggaggcg
caggcagcggccgcagccgcatctgcagaatccagggacttcagcggagcaggtgggata
ggtgtgttctcagagagttcttcagtagcctcaaagttgagttccaagagtgaaaaggag
ctgaaaaacagaagaaagaaaaagaaacagaaggagcaggctggggaggaagagaaggaa
gatgcggtgcggaaatctgcctctgaggacagcatacggaagaaaggcttccggttttca
ctagaaggaagcaggctgacctatgagaagaggttttcctctccacaccagtctctgctg
agcatccgaggctcccttttctctccgagacgcaacagtagagccagccttttcagcttc
aaaggtcgagtgaaggacgtggggtctgaaaatgacttcgcagacgatgaacacagcacg
tttgaggacaacgacagcagaagagactctctgtttgtgccgcacagacacggagaaagg
cggcccagcaatgtcagccaggccagccgggcctcccgcggaatacccactctgcccatg
aatggaaagatgcacagtgcggtggattgcaatggtgtggtctctctggtcggaggcccc
tctgctctcacgtctcctgtggggcagctactgccagagggcacaactacagaaacagag
ataagaaagaggaggtccagttcttaccatgtttccatggacttgttggaagaccctaca
tcaaggcaaagagcaatgagtatggccagcattttgaccaacacaatggaagaacttgaa
gaatccagacagaaatgcccgccctgctggtataagtttgctaacatgtgcctgatttgg
gactgttgtaagccatggctaaaggtgaaacaccttgtcaacctggtagtgatggaccca
tttgttgacctggccatcaccatctgcattgtgttaaatacgctcttcatggccatggag
cactaccccatgacggagcagttcagcagtgtgctgtctgtggggaatctggtcttcact
gggatcttcacagcagaaatgtttctcaagataatcgctatggatccatattattacttc
caagaaggctggaacatctttgatggatttattgtgagccttagtttaatggaactcggt
ctggccaacgtggaaggattgtcagttctccgatcattccggctgcttagagtcttcaag
ttggcaaaatcctggcccacactgaatatgctcatcaagatcatcggcaactcggtgggc
gccctgggcaacctgaccctggtgttggccatcattgtcttcatcttcgccgtggtcggc
atgcagctgtttgggaagagctacaaggagtgcgtctgcaagatttccaacgattgtgag
cttccacggtggcacatgcacgacttcttccactccttcctgatcgtgttccggtgggtg
ctgtgtggagagtggatagagaccatgtgggattgcatggaggtcgcgggccagaccatg
tgtctcactgtcttcatgatggtcatggtgattgggaaccttgtcgttctgaacctcttc
ttggccttgctcctcagctccttcagcttctacaaccttgccgccacagatgatgacaat
gagatgaacaacctccagatagctgtgggcaggatgcaaaggggaatcgactttgttaaa
aggaagatccgtgaattcatcgagaaggccttcgtgagaaagcagaaggctttggatgag
atcaaaccccttgaagacctgaacaacaagaaagacagctgtatctccaaccacatgacc
atcgaaataggcaaagacctcaattacctcaaagatggaaacgggacgaccagtggcata
ggcagcagtgtggagaagtatgtggtagacgagagtgattacatgtcattcataaacaac
cccagtctcactgtgaccgtgcccattgccgtcggagagtctgactttgaaaataatacg
gaagaattcagcagcgaatcagatatggaggaaagcaaggagaaattgaatgcaactagt
tcatccgaaggcagtacagtggatataggtgctccggcagagggagagcagccggaagca
gaaccagaagaatcccttgagccagaagcctgcttcacagaagactgtgtgagaaaattc
aagtgttgtcagataagcatagaagaaggcaaaggcaagctctggtggaacttgaggaaa
acatgctacaagatagtggagcacaactggttcgaaaccttcatcgtcttcatgattctg
ctcagcagcggtgctctggcctttgaagacatatatattgagcagcggaagaccatcaag
accatgctggagtatgctgacaaggtcttcacttacatcttcatcctggagatgcttctc
aagtgggtggcctatggtttccagatgtatttcaccaatgcctggtgctggctggacttc
ctgattgttgatgtctcattggttagcttaactgcaaatgccttgggctattcagagctc
ggcgccatcaaatccctccgaacattaagagctctcaggccactcagagccttatctcgg
ttcgaaggaatgagggttgttgtaaatgctcttctgggtgccatcccatccataatgaac
gtgcttctggtctgcctgatcttttggctaatattcagcatcatgggagtgaatctcttt
gctggcaagttctatcactgcataaactacaccactggggaaatgttcgacgtgagtgtg
gtcaacaacttcagtgagtgccaagcgctcatagagagcaaccagacagccaggtggaag
aacgtgaaagtcaactttgataacgtgggactaggctatctttctctgcttcaagtggcc
acatttaaaggatggatggacatcatgtatgcagctgttgactcaagaaatgtagagttg
caacccaaatacgaagacaatctatacatgtacctttactttgtcatcttcattattttc
ggctcgttcttcacactgaatcttttcattggtgtcatcatagataacttcaaccaacag
aaaaagaagtttggaggtcaggacatctttatgacagaagaacagaagaagtattacaat
gcaatgaagaagctgggatccaagaaaccgcagaagcccatccctcggcctgctaacaaa
tttcaagggatggtctttgattttgtaaccaaacaagtctttgacatcagcatcatgatc
ctcatctgcctcaacatggtcaccatgatggtggagacggatgaccagagtcaggagatg
actaacatcctctactggatcaacctggtgttcatcgtgctgttcacgggcgagtgcgtg
ctgaagctcatctccctccgctactactacttcaccattggatggaatatttttgatttt
gtggtggtcattctctccatcgtaggaatgtttctggccgagctgatagagaagtacttt
gtgtcccctaccctcttccgagtcatccgactggccaggatcggccgaatcctacgcctg
atcaaaggcgccaagggcatccgcaccctgctcttcgctctgatgatgtcccttcccgcg
ctgttcaacatcggcctcctgcttttcctggtcatgttcatctacgccatctttgggatg
tccaactttgcctacgttaagagggaagttgggattgatgacatgttcaattttgagacc
tttggcaacagcatgatctgcctgttccaaatcacgacctcggcaggctgggacggactg
ctggcacctatattaaatagcggacctcctgactgtgaccctgaaaaagatcaccctgga
agctcggtgaagggggattgtgggaacccatccgtggggattttcttttttgtcagctac
atcatcatatccttcctggttgtggtgaacatgtacatcgctgtcatcctggagaacttc
agcgtcgccacagaagaaagcgcagagcccctgagtgaggacgactttgagatgttctat
gaggtctgggagaagttcgaccccgacgccactcagttcatagagttctgcaaactctct
gactttgcggctgccctggatcctccccttctcatcgcaaagccaaacaaagtccagctc
atcgccatggatctgcccatggtgagcggagaccgcatccactgcctggacatcctattt
gcttttacaaagagggttttgggggagagtggagagatggatgcccttcgggtccagatg
gaagagcggttcatggcttccaacccctccaaagtctcctatgaacccattaccaccact
ctgaaacgcaaacaagaggaggtgtctgctattgtcatccagagagcgtacaggcggtac
ctcctgaagcagaaagttaagaaagtgtcatctatatataaaaaagacaagggaaaagaa
ggtgaaggaacgccgatcaaagaagacatcgtcattgataaactaaatgagaattcaact
ccggagaaaactgatgtgacgccttccaccacctctccaccttcctatgacagcgtgacc
aaacccgaaaaggagaaatttgaaaaggacaaatcggaaaaggaggacaaagggaaagat
atcagggaaagtaagaagtaa
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integrated database retrieval system
