Arvicola amphibius (Eurasian water vole): 119826578
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Entry
119826578 CDS
T08327
Symbol
Trpc4
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04360
Axon guidance
aamp04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
119826578 (Trpc4)
09158 Development and regeneration
04360 Axon guidance
119826578 (Trpc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119826578 (Trpc4)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119826578 (Trpc4)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
BAR_4
Motif
Other DBs
NCBI-GeneID:
119826578
NCBI-ProteinID:
XP_038203896
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Position
11:complement(24094206..24222745)
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AA seq
889 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRDSWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLNCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVNAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIREAKTEEGLTEENVKELKQDISSFRFEVLGLLRGSKLSTIQSGNAASSADADEKSHSE
EEITRQQAAGPLEXNIQLESQGLASRGDSGIPGLNEQCVLVDHRERNTDTLSLQVGKRVC
PFKSEKVVVEDTVPIIPKEKHAHEEDSSIDYDLSPTDTAAHEDYVTTRL
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctattacaaaaggaatgtcaacgccccctacagagaccgcatccccctg
aggattgtcagagcagagtctgaactctcaccgtctgaaaaagcctacttgaatgcagtg
gagaagggggactatgcgagtgtcaagaagtctcttgaggaagctgagatttactttaag
atcaacatcaactgcatcgacccccttgggaggactgctcttctcatcgccattgagaac
gagaacctggagctgattgaactgttgctgagtttcaacgtctacgttggcgatgcgctg
cttcatgctattaggaaagaggtggtgggagccgtggagctgctgctgaaccacaaaaag
ccaagtggagagaagcaggtgccgcccattctcctggataagcagttctcggaattcact
ccagacataacacctatcatcttggccgcacatacaaataactatgagataatcaaactt
ttggtccagaaaggtgtctcagtgcccagacctcacgaggtccgctgtaactgtgtggag
tgtgtctccagctcggacgtggacagcctcaggcactcacggtccaggctcaacatctac
aaggcgttggccagtccctcgctcatcgccctgtcaagcgaagacccttttctcaccgcc
tttcagctaagctgggagctgcaggaactgagcaaggtggagaatgaattcaagtcggaa
tatgaggagctttcgagacaatgcaaacaattcgctaaggacctcctagatcagactcgg
agttccagagagctggagatcattcttaattaccgcgatgacaatagtctgatcgaagaa
cagagcggaaatgatcttgcgaggctaaaattagccattaagtaccgtcaaaaagagttc
gttgcccagcccaactgccagcagctgctcgcctcccgctggtacgacgagttccccggc
tggaggagaagacactgggccgtgaagatggtgacgtgtttcataataggactgcttttc
cccgtcttctccgtgtgctacctgatagcccctaaaagcccacttggactgttcatcaga
aagccatttatcaagtttatctgccacactgcctcctatttgacctttttgttcctgctg
ctgctggcctctcagcacatcgacaggtcagacttgaacagacaaggtccaccaccaacc
atcgtggagtggatgatattaccgtgggtcctgggttttatctggggagagattaagcag
atgtgggacggcgggcttcaggattacatccacgactggtggaatctaatggacttcgtg
atgaactccttgtatttggccacaatctccctgaagatcgttgcattcgtaaagtacagt
gctctgaacccacgggactcgtgggacatgtggcaccccaccctggtggcagaggctcta
tttgctattgcaaacatcttcagttccctgcggctgatctcactgttcactgccaattcg
cacctgggacctctgcagatatcgctgggacggatgcttctggacatcctaaaattcctc
ttcatctactgcctcgtgctgctcgcctttgcgaatggcctaaatcagctgtacttctac
tatgaagaaacaaaggggttaaactgcaaaggcatccggtgcgagaagcagaacaatgcc
ttttccacgttatttgaaactctacagtccctgttttggtcaatatttggactcatcaat
ttgtatgttactaacgtcaatgcccagcatgagttcaccgagtttgttggggccaccatg
tttgggacatacaatgtcatctctctggttgtcctactgaacatgttaattgctatgatg
aataattcttaccaactaattgccgaccatgcagacatagaatggaaatttgctcgaacg
aagctctggatgagctactttgaagaaggaggtaccctgcctacgcctttcaacgtcatc
ccaagccccaaatccctgtggtacttggtcaagtggatctggacgcacctgtgtaagaaa
aagatgagaaggaagccagaaagcttcgggacaatcgggcggcgggctgctgacaacctg
aggagacaccaccaatatcaagaggtcatgaggaatctggtgaagcggtacgtggcggcc
atgatcagagaggcaaaaaccgaagaaggcctgacagaggagaacgtcaaggaactaaag
caagacatttctagcttccgctttgaagttctgggattgctccgaggaagcaagctctcc
acaatccagtcaggcaacgcggcgagttcagcagacgctgacgaaaagagccacagtgaa
gaagaaattactcgtcaacaggcggcaggaccacttgagnagaatatccaactggaatcc
caaggattagcttcacggggtgactcaggcattcctgggctcaatgaacagtgtgtacta
gtagaccatagagaaaggaatacggacactttgagtttacaggtaggcaagagagtgtgc
cccttcaagtcagagaaggtggtggtggaagacactgtccctatcataccaaaggagaag
catgcccacgaggaggactcgagcatagactatgacttaagccccacggacacagcagcc
cacgaagactacgtgaccacaagattgtga
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