Argentina anserina (silverweed cinquefoil): 126803899
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Entry
126803899 CDS
T10558
Name
(RefSeq) uncharacterized protein LOC126803899 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126803899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126803899
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126803899
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126803899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
126803899
NCBI-ProteinID:
XP_050387578
LinkDB
All DBs
Position
7:11549894..11567842
Genome browser
AA seq
2414 aa
AA seq
DB search
MLKFSQTTADQIRFLLHSLNDSNSDSVHRELTQFVEYGIEGSILLLQTCLDHLNHYRSDS
KNVALERVLASIFKYLIDQPNFSTMFCESLRNTAVNEGIVQNFSSALQLSVPEKIGVGLA
LSDSENLDTRICGKNFCMAQIEQLCQTPADRISSEKIQSIVMFLQRSEGLSKHVDSFMQM
VSLLQLKDDESSFVLSPLLSDELRDADFLRNVDLFHESGENDFDAILAEMEKEMSMGDIM
KELGYGCTVDTSQCKEILSLFLPLNEITISKILGTISCTHAGLEDNQNTFSTFRLALGYI
SSSDLPMLNTWNIDVLVDTINQLAPNTNWISVIENLDHEGFYIPNQEAFSFFMSLYQHVC
QEPFPLHAICGSVWKNTEGQLSFLKHAVSSPPEVFTFAHSVRQLPYADAVNGHKLQHGHA
NHAWLCLDLLDVLCHLSERGHALSVRSILEYPLQHCSEVLLLGMAHINTPYNLLQYEVSF
IVFPMVVKNVMANGMIVHLWHTNPSLVLRGFVDTYNSDPDSMNRIVDICQELKILPSVME
MIPSPFSIRLAALAFRKELVELEKWLSSNLVTYKDTFFEECLRFLKEIQSGGTQDFSTRP
FQHSSAVSTLYGDTTATFSKVLKAHVGQITSSHLTEEMERLTVSIMNSNPRLQNGGNTES
STDGGYTDDIETEANSYFHQMFSGQLTIESMVQMLAGFKESSVKREQSIFECMIANLFEE
YRFFPKYPERQLKIAAILFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKAL
EQFVDRLIEWPQYCNHILQISHLRNTHSELVAFIEQALARISSGHSDSDGSYHASAVHHH
GPSQVTSGNVASAVHHLGPSQVTSGNVEVNGSSIVQSGQPISTQLQLQQRHESSFDDRVK
SSTSSNEVKPFISSAMPPTVPVGDASSIQKVQNAVSVQSVSSSASPGFVRPTRASASTRF
GSALNIETLVAAAEKRDAPVEAPAEIQDKVLFIVNNISLTNIEAKSKEFSEILKEQYYPW
FAQYMVMKRASIEPNFHDLYLKFLDKLNSKTLNKEIVQATYENCKVLLGSELIKSSSEER
SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLA
YQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKTLGVDLKEITPTSLLKDRNRELE
GNPDFSNKDFGASQPQIAEVKSGIIPPLNQVELPIDVAPSNSGSHTHLLSQYPTLMEDDK
LAMGLSDQITSAQVLLQATPSQSPFSVSQHPTAIPNIGTHVIINQKLSALGLHVHFQRVV
PIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDDTRIFNAAHLMVASLAGSLA
HVTCKEPLRSSILSQLRNSLQGLNIANELLEQAVQLVTNDNLDLGCAVIEQAATDKAVAT
IDGEIGPQLSVRRKREGVGATYFDANMYPQGSMGVVPEALRPKPGHLSLSQQRVYEDFVR
LPWQNQSIQSSHVLPVATTASSGSVGLTSTYSSASGQLNTGYSAGPGSKFEAVSRPLEEV
MESNSALHLSASSNHVGATDGVSHHSSENDSIVGSFPSAASAPELHSVESPDVVKESGVS
SQSPPSLAVTERLGNHSEPSLPTGAAMEKYQIVAQKLEAMVTNDARESEIQGVIGEVPDI
ILRCVSRDEAALAVAQKVFKGLYENASNQIHVRTHLSLLAAIRDVCKLVSKEVTSWVMYS
DEERKFNKEITVGLILSELLNLAEYNVHIAKLIDSGRNRPATEFATSLVQTLAIEDFKVI
SELQNVVEALNKAAAKPGSPESLQQVVEFIKNPAANLTAGVNVGKDDKARQSREKKAPVH
SPGSREEFSIVDSAESDPPGFRDQVSSLFSEWYHFWELPGANENNCAHLILNLHSSGMLK
DDLMERFFRLLTELTVAHCLSSEVMNSGTLQTPQQVQSLSFLAIDAYAKLVFSIIKMEQG
SNKLILLSKILAVTVRVIQKDAEEKKSSFNARPYFRLFVNWLLDLGSLDPIIDGANFQIL
TAFANAFHALQPLKVPTFSFAWLELVSHRSFMPKMLAGNGQKGWPFIQRLLVDLFQFMEP
FLRNAELGIPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFP
RNMRLPDPSTPNLKIDLLAEITQSPRVLSEVDAALKVKQMKTDVDEYLKTRQQGSSFLTE
LKQKLLLLPTEAASAGTRYNVPLINSLVLYVGMQAIQQLQARTPHAQANQTVPFVYLVGA
ALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTHTHYFSFIVLYLFAESNQQEIIQEQIT
RVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRGFIRCAPEIEKLFESVSRSCGAKPV
DEGMVSGWVPETAH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagttttcgcagaccactgcggaccagattcgcttcctcctccacagcctcaac
gactccaactccgactccgttcaccgtgagctcactcagtttgttgaatatggaattgag
ggaagcattttgctgctccaaacctgcctggatcatctcaatcattacagatcagacagt
aagaatgtggcactggaacgggttcttgcctcaatttttaaatatctcattgaccaacca
aatttcagcactatgttctgtgaatcactaagaaatacagcggtcaatgagggaattgtt
cagaatttctcgagtgcattgcaactgtctgtacctgagaaaattggtgttggtcttgct
ttgtcagattcagaaaacctagacaccagaatatgcggcaaaaacttttgcatggctcag
attgagcaattgtgtcaaactcctgcggacaggatctcttctgagaaaattcagagcatt
gttatgttcctccagcggtctgagggtctttccaagcatgtagattcctttatgcagatg
gtatctttactgcagctgaaagatgatgaaagctctttcgttttaagtccattgctttcg
gatgagcttcgtgatgctgattttttgaggaacgtggatctgttccatgaaagtggagaa
aatgacttcgatgcaattttagcagaaatggagaaggagatgagtatgggagatattatg
aaggaattaggttatggatgcacagttgacacatctcagtgcaaagagattttatccctt
ttcttacctctcaatgagattactatctctaaaatacttggcacgatttcctgcacccat
gctggtctcgaggataatcagaatacattttcaacctttaggttggcacttggttacatc
agttcatctgatttacctatgctgaatacgtggaacattgatgtccttgtggatacaatc
aatcaacttgctccgaacaccaactggataagtgttattgaaaatttggatcatgaggga
ttctatattcctaatcaggaggcattctcttttttcatgtctctatatcagcatgtctgt
caggagccattccccctacatgctatttgtgggtctgtttggaagaatactgagggtcag
ctatcatttctcaaacatgctgtttcatcaccacctgaagtatttacctttgctcactct
gttaggcagctgccatatgcggatgcagtaaatggccacaagctacaacatgggcatgca
aatcatgcatggttgtgtctagaccttttggatgtactttgtcacctatcagagaggggt
catgctctttctgttcgctcgatactcgagtatcctcttcaacactgttctgaagtcctg
cttcttgggatggctcacattaatactccatacaacctgctgcagtatgaagtgtctttt
attgttttccccatggtagtaaaaaatgtcatggctaatggcatgattgttcacctctgg
catactaacccctctttggtgctccggggatttgtggatacctacaatagtgatccagac
agcatgaataggatagtggatatctgtcaagagctcaagattttgccgtccgtcatggaa
atgatcccttctccgtttagtatcagactggcggcccttgcttttagaaaagagcttgta
gaacttgaaaagtggttgagtagtaatttggttacatataaagacaccttttttgaggag
tgcctcaggttccttaaggagattcagtctggtgggacccaagatttctccaccagacca
ttccagcattccagtgctgtctcaactctttatggggacactactgctaccttctcaaag
gttcttaaagctcatgttgggcagattacttctagccaccttactgaggaaatggaaaga
ctcactgtatcaattatgaattctaatccaaggctacagaatggtgggaatacagagtca
tcaacagatggtggatatacagatgatattgaaactgaagccaactcttacttccatcaa
atgttttctggtcaattgactattgaatcaatggtccaaatgctcgctggattcaaagaa
tcttctgtaaaaagggaacaatccatttttgagtgcatgattgctaatctgttcgaagag
tacagattctttccaaagtatcctgaaagacagctcaaaattgctgcaattttatttggg
tctgtcatcaagcagcagcttgtaactcatttgaccctggggattgctctgcgcggtgtt
ttagatgcattgcgcaaacctgcagattcaaaaatgtttgtgttcggaaccaaggctttg
gagcagtttgtggaccgtctgattgagtggccacagtactgcaatcacattcttcagata
tcccatttgcgcaatacccattcagagctggtggcattcattgagcaggctcttgccagg
atttcatccggtcattcagattcagatggaagttaccatgcttctgcagttcatcatcat
ggccccagtcaagttacctcaggaaatgttgcttctgcagttcatcatcttggccccagt
caagttacctcaggaaatgtggaggtaaatggatctagcattgtacaaagtggacagcca
atatctactcaactccagctccaacagagacatgaaagctcttttgatgatcgtgtcaag
tcctcaacttcatctaatgaggtgaaaccatttatatcatctgcgatgccacccacagtt
cctgttggtgatgcttcaagtattcagaaggtacaaaatgcagttagtgttcaatcagtt
tcgtcttctgcttcccctggatttgttcgtccgacacgagcatctgcctctaccaggttt
ggctctgctttgaacattgaaacattggttgcagcagctgagaaaagagacgctcctgtt
gaggctccagcagagattcaggacaaagtattatttatcgttaataatatatcacttact
aatattgaggccaagtcaaaggagttctccgagatactgaaagagcaatactatccttgg
tttgcgcagtatatggttatgaaaagggcaagtattgagccgaattttcatgacttgtac
ctgaaatttctggacaaacttaattcaaagactttgaataaagagattgttcaagccacg
tatgagaactgcaaggttcttctagggtctgagcttataaaatcaagctcagaggagcgt
tctttattgaaaaatttaggtagctggcttgggaagcttacgatcggaagaaatcaagtt
ttaagggctcgtgaaattgatcccaaatccttgatcatagaggcatatgagaaaggtttg
atgattgctgtcataccttttacttcaaagattttggaaccatgtcaaagtagcctggct
tatcaaccaccaaatccctggacaatgggtattcttggattacttgctgagatctattcc
atgccaaatttgaagatgaatctcaagtttgatatagaggttctattcaagactttagga
gtggatttgaaggagattacaccaacttctcttctcaaggatcgcaatagagaacttgaa
gggaatcctgatttctccaacaaagactttggggcatcccaaccacagattgctgaagta
aaatctggaattatccctccactaaaccaagttgagctaccaattgatgttgctccatct
aactctggcagccatacacatttgttatctcagtatcctaccttgatggaggatgacaag
cttgctatggggttatctgatcagatcacttctgctcaagtactgttacaagctactcca
tcacagtccccattttctgtcagtcagcatcccacagcaataccgaacattggaacccac
gtaattatcaaccagaaactcagtgccttggggttgcatgtgcacttccaaagagtggtt
ccaattgctatggatagagctatcaaagaaattgtatctggtatagttcagcgcagtgtt
tctatagctacccagacaactaaggagcttgtgttaaaggactatgccatggaatcagat
gacacacgaatatttaatgcagctcacttgatggtcgccagtttggcagggagtctagca
catgtgacatgcaaggaaccgttgcggagttcaatattgagtcagctaagaaattctctt
cagggattaaatatagcaaatgaacttctagaacaagctgttcaacttgtaaccaatgat
aatctggatcttggatgtgcagtcattgagcaggctgctacagataaggcagtagcaaca
attgatggggaaataggtccacagctttcagtaagaaggaagagagaaggtgttggtgca
acctatttcgatgctaacatgtatccacaaggttctatgggtgttgtgccagaagctctc
cgccctaaacctggtcatttgtccctctctcaacaacgagtttatgaagattttgttcgg
cttccctggcaaaaccaatctatccaaagttcgcacgttctgccagttgctaccacagct
tcatctggtagtgttggtctcactagcacatacagttcagcatctgggcaacttaacact
ggatactcagcaggacctgggagcaaattcgaagctgtttctcgtccattggaggaagtg
atggaatccaattctgcccttcatcttagtgcttcatctaatcatgttggggcgaccgat
ggtgtttcccatcatagttctgaaaatgattctattgttggctcatttccttctgctgct
tctgccccggagctgcactctgtagagtcacctgatgttgtaaaggaatctggagtttcg
tcacagtcgccaccttcacttgctgtaactgagcgtcttggaaatcactcagaaccttcc
ctcccaacaggggctgcaatggaaaaataccagattgttgcgcagaagttggaagcgatg
gtaactaatgatgctagggaatcagaaatccagggagtcattggtgaagtgcctgatatt
atactcagatgtgtcagtcgagatgaggctgccttggctgtggctcaaaaggttttcaag
ggtttgtatgagaatgcatcaaaccagattcatgtacgcactcatctctcattgctggct
gcaatccgtgatgtttgtaagcttgtctctaaggaggtcactagttgggtgatgtattct
gatgaggagcggaagtttaacaaagaaattactgttgggcttatcctcagtgaattgcta
aaccttgccgagtacaatgttcacatcgcaaaacttattgacagtggcaggaataggcca
gcaactgagtttgctacttccttagtccaaactttggcaattgaagattttaaagttatc
tcagaacttcaaaatgttgttgaagcattgaataaggctgctgccaagcctggatctcca
gagtcactgcagcaggttgtagaatttatcaagaatcctgctgctaatttgactgccggt
gttaatgttgggaaggacgacaaggccagacaatcgagagaaaaaaaggctcctgtccac
tctccgggaagcagggaagagttcagtattgtggattctgcagaatcagaccctcctggt
ttccgcgatcaggtgtcctcgctgttttctgagtggtatcacttttgggaactacctggt
gcaaatgaaaataattgtgcccatttaatcttaaatttgcactcaagcggcatgctgaag
gatgatctgatggagcggtttttccgactactcacagagcttactgttgcacattgtcta
tcttctgaggtgatgaattctggcacactgcagactcctcaacaagtgcagagtctatcc
ttcctggccattgatgcttatgctaaacttgtattttcaattattaagatggagcaagga
tcaaataaactcattctcttgtccaagattttggcagtcacagtgagagtcattcagaag
gatgcagaggaaaagaaatcatctttcaatgcaagaccatattttagattgtttgttaac
tggttgctagaccttgggtctttggatcctattattgatggtgctaactttcagatattg
acagccttcgcaaatgcatttcatgcgttgcaacccctcaaggttcctacattcagcttt
gcatggctcgagttggtgagtcacagaagtttcatgcctaaaatgctagctggaaacggt
cagaagggttggccctttatacaacgtttgctggttgacttatttcagttcatggagcca
tttttgaggaatgctgaacttggaataccggttcacttcctatataaaggtacccttagg
gttcttcttgtgctgctccatgatttccccgagttcctttgtgattatcacttcactttc
tgtgatgtgattcccccaagttgtattcaaatgcgaaatatcatactcagtgcatttccc
cgtaatatgaggcttcctgatccatctactccaaacttaaagattgatttgcttgctgaa
atcactcagtctccacgtgttctttccgaggttgatgcagctttgaaagtaaagcagatg
aaaaccgatgtggatgagtatctcaagacaaggcaacaaggttcttcatttttgactgaa
ttgaagcaaaaattgctccttctaccaaccgaagctgcctcagctggtactcgttacaat
gtacccctcatcaactcccttgtactctatgtggggatgcaggctatccagcagcttcaa
gctagaacacctcacgctcaggcaaatcaaactgttccatttgtttatttggtgggtgct
gctttggatatctttcagactctgatagtggacctagatactgaaggacggtaccttttc
ctaaatgcaatagcaaaccaactccgctatccaaacacccatacacattacttctccttc
attgttctttacttatttgcggagtcaaaccagcaggaaattatccaggagcaaatcaca
agggttttgttggaacgtcttatagttaatcggccgcatccatggggtctactgatcacc
ttcattgagctaatcaagaatccgaggtacaacttttggaaccggggtttcataaggtgt
gcaccagagattgaaaaactatttgaatctgtatcaaggtcatgtggagccaagcctgtg
gacgagggtatggtttctggttgggtaccagagacagctcactga
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integrated database retrieval system
