Ampullimonas aquatilis: ACMYR3_15480
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Entry
ACMYR3_15480 CDS
T11161
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aaqa Ampullimonas aquatilis
Pathway
aaqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACMYR3_15480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqa03021
]
ACMYR3_15480 (rpoB)
03400 DNA repair and recombination proteins [BR:
aaqa03400
]
ACMYR3_15480 (rpoB)
Enzymes [BR:
aaqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACMYR3_15480 (rpoB)
Transcription machinery [BR:
aaqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACMYR3_15480 (rpoB)
DNA repair and recombination proteins [BR:
aaqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACMYR3_15480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
XRK12349
LinkDB
All DBs
Position
complement(3307255..3311358)
Genome browser
AA seq
1367 aa
AA seq
DB search
MLYSFTEKKRIRKSFAKRANVQNIPYLLATQLESYASFLQEGVPPVQRKSDGLQAAFNSI
FPIVSHNGFARLEFVSYMLGEPVFDVKECQQRGLTFASPLRAKVRLVILDKESSKPTVKE
IKEQEVYMGEIPLMTTTGSFVVNGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGLNPEQILAHFFVFDNFNLKSEG
ALMEFVPERMRGELARFDITDTSGKVVVQKDKRINAKHIRELESAETRFISVPEDYLLGR
VLAKNIISQDTGEIIANANDELTESLLAQLRDAKINQIQTIYTNDLDQGAYISQTLRVDE
TVEQMAARIAIYRMMRPGEPPTEEAVEALFNGLFYSEERYDLSAVGRMKFNRRVSRADDL
GPMTLTNEDILDTIKVLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRSGLVRVERAV
KERLGQAESENLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEYGFLETPYRKVE
SGKVTDQIEYLSAIEEGKYVIAQANATIDNEGGLIDELVSAREAGETLLVSPSRIQYMDV
APSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPIVGTGIERTVAVDSGTT
VQALRGGLVDYVDAGRIVIRVNDDEAAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGD
RVVRGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVAEDRYTSIHIEE
LSVVARDTKLGPEEITRDISNLAENQLARLDESGIVYIGAEVEAGDALVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIQRDKRAQQIIDDELKR
YRLDLNDQMRIVEVDTFERIERLLIGKLANGGPKKLAKGTVITKEYLDDLDKYHWFDLRL
ADDVVASQLEALKESIAQKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQP
GDKMAGRHGNKGVVSRIVPVEDMPYMADGTPVDVVLNPLGVPSRMNVGQILETHLGWASK
GLGLRIGEMLQAHSQVAEIRSTLAKIYNGSGKQEDLDSFTDTEILELAANLKNGVPFATP
VFDGATEEEILKMLDLAYPDPIAKKLGMTPSKNQVTLFDGRTGDAFERSVTVGYMHVLKL
HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKS
DDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctctactctttcaccgagaaaaaacgcattcgtaagagctttgccaaacgggcaaat
gttcaaaatattccttatctgcttgcgactcagttagagtcctatgcttcttttttgcag
gagggtgttccaccagttcagcggaaaagtgatggcttgcaggcagcctttaattcgatt
tttcctatagttagtcataacggttttgctcgactggaatttgtcagttatatgctggga
gagcccgtatttgacgttaaagaatgtcagcagcgtggattgactttcgcgtcgccatta
agagcgaaagtcaggcttgtcattctggataaggaatctagcaagccaactgttaaggaa
atcaaagagcaggaagtctatatgggtgaaattcccctcatgacgacaacgggctctttt
gttgttaacggcactgagcgagttattgtttcccagttgcatcgctcgccgggtgtgttc
tttgagcatgatcgtggtaagactcatagctcgggcaagctcttgttctctgctaggatt
attccttatcgtgggtcttggttggattttgagtttgatccgaaggatattctatttttc
cgtgttgatcgacgtcgcaaaatgccagttacgattttgttgaaagcgattggcctgaat
ccagaacaaattctggcgcacttctttgtctttgataattttaatttgaagtcagagggt
gcactcatggagtttgtgccagaaagaatgcgcggtgaattagcgcgttttgacattact
gatacgtcgggtaaagtcgttgttcagaaagacaaacgaattaatgccaagcatatccgt
gagttggaaagtgctgagacacgcttcatttcagtaccagaagactatttgctaggtcgt
gtcttggccaagaacataattagccaggatactggtgaaattattgccaatgctaacgat
gagctgactgagtcactattggcgcaattgcgtgatgccaagattaatcagatccaaacc
atttataccaatgatttggatcaaggcgcatatatctctcaaacattgcgtgttgatgag
actgttgaacagatggctgctcgtattgctatttatagaatgatgcgccctggtgagcca
cccacagaagaagctgttgaggcgctctttaatggtcttttctatagcgaagagcgctat
gatctgtcggcggtgggtcgtatgaagtttaatcgtcgtgtcagtcgagctgatgatctt
ggtccaatgacattaaccaacgaggatattctcgataccatcaaagtattggttgacttg
cgtaatggcaagggcgaggtcgatgatattgatcacctcggaaatcgtcgtgtgcggtgc
gttggtgagttggctgaaaatcagttccgttctggtttggtccgtgttgaacgagcggtt
aaggagcggcttggccaggctgagtctgagaatttaatgccgcatgaccttatcaattcc
aaaccaatttcagcggctatccgtgagtttttcggttcatcgcagctctctcagtttatg
gatcaaacaaatccgttatccgagattacgcacaaacgtcgcgtatcagctttgggccct
ggtggattgactcgtgagcgggccggcttcgaggtgcgtgacgtacatccgactcattat
gggcgagtctgcccgattgaaacgccggaaggtccaaacattggtctgattaactcattg
gcgctatttgctcgattgaatgagtatggctttttggaaactccttatcgaaaagtggag
tcaggaaaagttactgatcagattgagtatttgtctgctattgaagaaggtaagtacgtt
attgctcaggcaaatgccaccattgataatgaaggcggtttgattgatgagttggtatcg
gcacgtgaggcgggtgaaacgttgctggtgtcaccaagtcgtattcaatatatggatgtg
gcaccatcacagattgtttctgtagcggcatcattgattccattcctggagcatgatgat
gcaaaccgtgcactgatgggttcaaacatgcaacgtcaggcagtgccttgcttgcgtcct
gaaaagccgatcgtcggtacgggaattgagcgaactgttgcggttgactccggtaccact
gtgcaggcgctgcgtggtggtttggtagattatgttgatgcaggtcgtatcgttattcgt
gtgaatgatgacgaggctgctgcgggtgaggttggtgttgatatctataatttgattaag
tacacgcggtcaaatcagaataccaatattaatcagcgtccaattgtcaaagttggtgat
cgtgttgtcaggggtgacgtggttgccgatggcgcatctacagatctgggtgaattggca
cttggtcaaaacatgctcgttgccttcatgccatggaacggttataactttgaagactcg
attctgatttctgaaaaagttgtagccgaagatcgctatacttcgattcatattgaagag
ttgtcagtggtggctcgtgacacaaagcttggcccagaagaaattacgcgtgacatctca
aatcttgctgaaaatcaattggctcgccttgatgagtccggtattgtctatattggtgcc
gaagttgaagctggtgatgcgctggtcggcaaggttacacccaaaggtgaaactcagctt
acgcctgaagaaaaattgctgcgtgcaattttcggtgaaaaagcgtccgatgttaaagat
acttctctgcgcgtgccttcgggtattgctggaactgttattgatgttcaggtttttacg
cgcgaaggtattcagcgggataaacgtgcgcagcaaattattgatgatgagctgaaacgt
taccgtcttgatctgaatgatcagatgcgtattgttgaagttgatactttcgagcgtatt
gagcgcttgctgattggtaagctggccaatggtgggcctaagaaactggccaaaggcaca
gtgattaccaaagaatatcttgatgatctagataagtaccactggttcgacttgcgctta
gctgacgatgtagttgcaagtcaacttgaagcactcaaagaatccattgctcagaaacgc
catcaatttgatcttgccttcgaagagaagcgtaagaaattgacacaaggcgatgagtta
ccccctggtgtgcagaagatggtcaaggtctatttggccgtgaaacgtcgtctgcagcct
ggcgataaaatggctgggcgtcacggtaacaaaggggttgtgtcgcgaattgtaccggtt
gaggatatgccttatatggcagatggcacacctgtagatgttgtcttgaatccactgggt
gttccttcacggatgaacgtgggtcagattttggagactcatttgggttgggcctcgaag
ggattgggattgcgcattggtgaaatgcttcaagcgcattcgcaagtggcagaaatccgt
tctactttggcaaagatctataacggctctggtaagcaagaggatttggattcttttaca
gataccgaaattctggaattggctgccaatttgaaaaatggtgttccgtttgcgacgcca
gtctttgatggtgcaacagaagaagagattctgaaaatgcttgatttggcatatccggat
cctattgccaaaaaattgggaatgacaccctcgaaaaaccaggtaacactgtttgacggt
agaacgggggatgcgtttgagcgctcagttacagttggctatatgcatgtattgaaattg
caccatttggtggatgacaagatgcatgctagatcaacagggccatattctctggttaca
cagcaaccgttgggtggtaaagcccaatttggtgggcagcgttttggtgagatggaggtt
tgggctttggaggcgtatggcgcgtcctatgttctgcaggaaatgcttaccgttaagtcg
gatgacgttaatggtagaaccaaggtctatgaaaatctggttaaaggtgatcatgtgatt
gacgccggcatgcctgaatcattcaatgtattggtcaaagagatccgttcgctcggtatt
gatatcgaccttgagcgtaattaa
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