Alcaligenes aquatilis: D3M96_19595
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Entry
D3M96_19595 CDS
T05678
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aaqu
Alcaligenes aquatilis
Pathway
aaqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D3M96_19595 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaqu03021
]
D3M96_19595 (rpoB)
03400 DNA repair and recombination proteins [BR:
aaqu03400
]
D3M96_19595 (rpoB)
Enzymes [BR:
aaqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D3M96_19595 (rpoB)
Transcription machinery [BR:
aaqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D3M96_19595 (rpoB)
DNA repair and recombination proteins [BR:
aaqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D3M96_19595 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AYN22567
UniProt:
A0A3G2HZS6
LinkDB
All DBs
Position
complement(4275835..4279947)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQQVPYLLATQLHSFRTFLQKDTLPSQRKVEGLQEAFSSI
FPIVSHNQMARLEFVSYTLGEPVFDVKECQLRGLTYASPLRAKVRLVLMDREVSKPTVKE
VKEQEVYMGEMPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGLTPEQILAHFFEFDHIELHQEG
GKLQFVPEHWKGEVARFDITDRDGRVLVEKDKRINAKHLRDLQAAKIEYISIPEDFLLGR
VLAKNIINAETGEVIANANDEITESILAEMRAANVRDFETLYINELDQGGFISLTLRTDE
TADSNAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEESYDLSRVGRMKVNSRLGRGDSI
EGPMTLTDEDILDTIQVLVSLRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAVKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
VDGKVSEQIDYLSAIEESNYVIAQANAELTEDGAFANDLVACREAGETMMTAPENIHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQARRGGVVVDVDAQRVVIRVHDDENVAGEVGVDIYNMTKYTRSNQNTNINQRPIVKRG
DIVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEDITRDISNLSEIQLNRLDDSGIVYIGAEVRADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIERDKRAQSIIDDELR
RYRQDLNDQLQIVEDDAFDRALKFLVGKTVNGGPRKLPKGTELTADYLNELDRWQWFDIR
LADEQHALVLEHTKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRIVPVEDMPHMADGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGIGHRINDMMQEEKNVQVSELRAFLDKVYNTTGKKTRINELTDDEVMNLATNLQKGLPL
ATPVFDGATEQEIDKMLRLAYPDDIAENLQLAPHRTQVRLFDGRTGEAFERMVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDIAGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLSLDMDLERK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttattcgtacaccgaaaaaaagcgcatacgcaagagcttcgccaaacgtgaagac
gtacagcaggttccttacctgttggctacccagctgcattctttcagaaccttcttgcag
aaggacacgctgccttctcagcgtaaggttgaaggcttgcaggaagcttttagttccata
tttccaatagtaagccataaccaaatggcgcggctagagttcgtgagctatacgctcggc
gagccggtgttcgacgtcaaagagtgtcaacttcgtggtttgacctatgcctcccccttg
cgggcgaaggttcgtctggtcctcatggaccgcgaggtgagcaagcctaccgtcaaggaa
gtaaaagagcaagaagtctacatgggcgaaatgcccctgatgaccgataacggctctttt
gtgattaacggtaccgaacgagtcatcgtttcccagctgcaccgttcgcccggcgtgttc
tttgaacacgaccgcggtaaaacgcacagctcgggcaagttgctgttctcggcgcgcgtg
attccttaccgtggttcctggctggacttcgagttcgatcctaaggacattctgttcttc
cgtatcgaccgtcgtcgcaagatgcctgtgactatcttgctgaaggccattggcctgacg
ccagagcagatcctggcccacttcttcgagttcgaccatatcgaactgcaccaggaaggt
ggcaagctgcaattcgttccagaacactggaagggcgaggttgcccgtttcgacattacc
gaccgcgacggtcgcgtactggttgaaaaggacaagcgtatcaatgccaagcatttgcgc
gacctgcaagcagccaagatcgaatacatctccatcccggaagatttccttctgggtcgt
gtgctggccaagaacatcatcaacgccgaaaccggcgaggtgattgccaacgccaacgac
gaaatcactgaatccattctggccgaaatgcgcgcagccaatgtgcgtgatttcgagacc
ctgtacatcaatgaactggaccagggcggctttatctccctgaccctgcgcaccgatgaa
acagcggattccaatgctgcccgtatcgcgatctatcgcatgatgcgtcccggcgagcca
ccaaccgaagaagcggttgaggccctgttcaaccgtctgttctacagcgaagagtcctac
gacttgtcgcgcgtaggtcgcatgaaggtcaacagccgtctgggccgtggtgacagcatc
gaaggtcccatgaccctgaccgacgaagacattctggacaccattcaggtgctggtgagt
ctgcgtaacggccgcggtcagatcgacgatatcgatcacctgggtaaccgtcgtgttcgt
tgcgtaggcgaattggccgaaaaccaattccgcgccggtctggtgcgtgtggaacgtgct
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgatctgatcaac
tccaagcccatctctgcggctgttaaagagttcttcggttccagccagctgtcgcagttt
atggaccaaaccaacccgctgtccgaaatcacgcacaagcgtcgtgtttcggcactgggc
cctggtggtctgacgcgtgaacgtgcgggctttgaggtgcgcgacgtgcacccaacccac
tacggtcgcgtgtgcccgattgaaacgcctgaaggtccaaacattggtctgatcaactcc
atggcgctgtacgctcgtctgaacgagtacggtttcctggaaacgccttaccgcaagatt
gttgacggcaaggtcagtgaacagatcgattacctgtcggctattgaagaaagcaattac
gtcatcgctcaggctaacgccgaattgaccgaagacggtgcctttgcgaacgatctggtt
gcttgccgtgaagcgggcgaaaccatgatgactgcgcccgagaacatccattacatggac
gtggctccttcgcagatcgtgtctgtggctgcttcgctgattccgttcctggaacacgat
gacgctaaccgagcactgatgggcgccaacatgcagcgccaggcggttccttgcctgcgc
cctgagaagcctttggtcggtaccggtattgaacgtactgttgctgttgactcgggtacg
accgtacaagcccgtcgtggcggtgtggtggtagacgttgacgcacagcgcgtggttatt
cgcgtgcacgatgacgagaacgtggctggcgaggtcggtgtagatatctacaacatgacc
aagtacacccgttccaaccagaacaccaacatcaaccagcgtcctatcgtcaaacgtggc
gatatcgtggctcgtggtgacgtgctggctgacggtgcatcgactgacctgggcgaattg
gctctgggtcagaacatgctgatcgcctttatgccttggaacggctacaacttcgaggac
tcgattctgatctccgagaaggttgtggcggacgatcgctacacgtcggttcacatcgaa
gagctgacggtggttgcccgtgacacgaagctgggacctgaggatatcacccgcgatatc
agcaacctgtccgaaattcagttgaaccgtctggacgattccggcattgtgtacatcggc
gccgaagtgcgtgccgacgacgtgctggtcggtaaagtgacacccaagggtgaaactcag
ctgactccggaagaaaagctgctgcgcgccatttttggtgaaaaagcctctgacgttaaa
gacacctccctgcgcgtgccttcgggcatggtcggtacggtgatcgacgttcaagtcttt
acccgtgaaggtatcgagcgtgacaagcgcgcccagtccatcattgatgatgaactgcgt
cgctaccgccaggacctgaacgatcagctgcaaatcgttgaagacgacgcctttgaccgt
gccttgaagttcctggtcggcaaaaccgtcaacggtggtccacgcaagctgcccaagggc
accgagctgaccgccgactacctgaacgagctggatcgctggcagtggttcgacatccgt
ctggctgatgagcaacacgcactggtgctggagcacaccaaggaatccttggagcaaaag
cgtcaccagttcgatctggcgtttgaagaaaagcgcaagaagctcacccaaggcgacgag
ctgcctcccggcgtgctgaagatggtcaaggtttacctggctgttaaacgtcgtttgcag
cctggtgacaagatggccggtcgtcacggtaacaagggtgtggtttcccgcatcgttccc
gtggaagacatgccgcacatggctgacggtacccctgtggacatcgttctgaacccgctg
ggcgtgccttcgcggatgaacgtgggtcaggttctggaagttcacctgggttgggctgcc
aagggtattggccaccgcatcaatgacatgatgcaagaagaaaagaacgtgcaggtttcc
gaactgcgcgcgttcctggacaaggtttacaacacgaccggcaagaaaactcgcatcaac
gagttgactgacgacgaagtgatgaacctggccaccaacttgcaaaaaggtctgccattg
gctacccccgtgttcgatggggcaaccgagcaggaaattgacaagatgctgcgtctggcc
tatccggacgatatcgctgagaacttgcaactggcaccgcatcgcacccaggttcgcctg
tttgacggtcgtaccggcgaagcctttgaacgtatggtcaccgtaggctacatgcactac
ctgaagctgcatcacttggtcgatgacaagatgcacgctcgttccaccggcccatactcg
ctggttactcagcagccgctgggtggtaaggcacagttcggtggtcagcgtttcggggag
atggaagtctgggcgctggaagcgtatggcgccgcctataccctgcaggaaatgctcacg
gttaaatccgacgacatcgccggccgtaccaaggtctacgagaacattgtcaagggtgac
cacgtgatcgacgccggtatgccggagtcctttaacgttctggtcaaggaaatccgttcc
ttgtccctggacatggatttggagcgtaaataa
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