Aggregatibacter actinomycetemcomitans D11S-1: D11S_0063
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Entry
D11S_0063 CDS
T00993
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aat
Aggregatibacter actinomycetemcomitans D11S-1
Pathway
aat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D11S_0063 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aat03021
]
D11S_0063 (rpoB)
03400 DNA repair and recombination proteins [BR:
aat03400
]
D11S_0063 (rpoB)
Enzymes [BR:
aat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D11S_0063 (rpoB)
Transcription machinery [BR:
aat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D11S_0063 (rpoB)
DNA repair and recombination proteins [BR:
aat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D11S_0063 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
ACX81487
LinkDB
All DBs
Position
48950..52978
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLNIPYLLTIQIDSFEKFIKRDPDGQQGLEAAFRSVFPIV
STNGNTELQYVSYQLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEQILDLFFYKITFEIKDNKLLMT
LVPERLRGETAAFDIETKGKVYVERGRRITARHIKALEKDKVTQVEVPTEYIIGKVAAKD
YVDLETGELICPANMELSLELLAKLAQAGYTTLETLFTNDLDYGPYISETLRVDPSNDRL
SALVEIYRMMRPGEPPTKEAAEALFDNLFFSSDRYDLSAVGRMKFNRSLGIEETTGGGTL
SNEDIVSVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLEAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSNLDDDFRFTDAFVTCRGEHGESGLYKPEEIHYMDVSTQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIEKAVALDSGVAVVAK
RGGTVQYVDASRIVVKVNEDETVAGEAGIDIYNLIKYTRSNQNTCINQIPCVELGDPVER
GEILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LSEEFEILEAGLFMRVRNLLLSGGFDAKSLDKLDRTKWLEQTLDNEEKQHQLEQLAEQHE
ELRKEFERKLEIQRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQQQSIA
KLREYMQKAYDLGGGSQKVDLSTFTDEEVMRLAQNLRKGLPVATPVFDGAHEKEIKGLLE
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQQMDPGTP
ESFNVIMKEIRSLGINIDLDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgaattcgtaaagacttcggcaaacgtccgcaa
gttttaaatattccctatttattaacaatccagatcgactcttttgagaaatttattaaa
agagatccggatggtcaacaaggcttagaagccgctttccgctccgtcttcccaattgtc
agtacgaacggaaataccgaattacaatatgtcagctatcaattaggcgagcctgtattt
gatgtgcgtgaatgtcaaattcgcggcacgacctatgcggcaccattgcgtgtaaaattg
cgtttagtcagctatgacaaagacgcagcaccgggcacgatcaaagatattaaagaacaa
gaagtttacatgggtgaaatcccgttgatgaccgataacggtacttttgtgattaacggt
accgagcgtgttatcgtatctcaattacaccgcagtccgggtgtattttttgatagcgac
aaaggcaaaacccactcttcaggtaaagtgctttataatgcacgcattattccttaccgt
ggttcatggttggattttgagtttgatccgaaagataacttatacgcacgtattgaccgc
cgtcgtaaattaccggcaaccattattttgcgtgctttaggctacaccaccgaacaaatc
ttagatcttttcttttataaaattacttttgaaatcaaagataacaaattgttgatgacg
ttagtgccggaacgcctacgtggtgaaaccgccgcctttgatattgaaaccaaaggcaag
gtgtatgtagaacgcggtcgtcgtattaccgcccgtcacattaaagcgttggaaaaagat
aaagtcactcaggtggaagtgccaaccgaatatattatcgggaaagttgccgcgaaagat
tatgtagatttagaaaccggcgaattaatttgcccggcgaatatggaactttctcttgaa
ttattggcgaaattggcacaagccggttataccacgctggaaactctatttaccaatgac
ttggattacggtccgtatatttccgaaaccctgcgtgttgatccgtcgaacgatcgttta
agcgctttggtggaaatttatcgcatgatgcgtccgggcgaaccaccgacaaaagaagcg
gcggaagcgttattcgataatttattcttctcttccgatcgttatgacttatctgcggta
gggcgcatgaaattcaaccgctctttaggcattgaagaaaccactggtggtggcacctta
agcaatgaagatattgtcagtgtgatgaaaaaattgattgatatccgtaatggccgtggt
gaagtggatgatattgaccacttgggtaaccgtcgtattcgttccgtaggtgaaatggcg
gaaaatcaattccgtatcggcttggttcgtgttgaacgcgcggtaaaagaacgcttatct
ttaggtgatctggaagctgttaccccgcaagatctaatcaatgcgaaaccgatttccgcc
gcggtgaaagaattctttggttcatcccaattgtctcaatttatggaccaaaacaacccg
ttatcggaagtgacccataaacgccgtatttccgcattgggtcctggcggtttaacccgt
gagcgtgccggttttgaagtgcgtgatgtacacgccacccactacggtcgtgtgtgtccg
attgaaacccctgaaggtccgaacatcggtttgatcaactccctttccgtttatgcgcgt
actaacgactacggtttcttagaaactccgtaccgtaaagtagtaaatggtcaggtgacc
gaagaaatcgaatatttgtctgccattgaagaaggcaaatacgttatcgcacaggcgaac
tccaatcttgatgatgatttccgctttaccgatgcctttgtaacctgtcgtggtgaacat
ggtgaatccggcttatataaaccggaagaaattcactatatggacgtttctacccaacaa
gtggtttccgtagcggcggcattgattccgttcctggagcatgacgatgcgaaccgtgct
ttgatgggggcgaacatgcaacgtcaagccgtgccgacattgcgtgcggacaaaccgtta
gtcggtacaggtatcgaaaaagcggttgcccttgactccggtgtggcggttgtggcaaaa
cgcggcggtaccgtccaatatgtggatgcttcccgcatcgtggtgaaagtcaatgaagac
gaaactgtcgcgggcgaagccggtattgatatttataacctcattaaatatacccgttcg
aaccaaaatacctgtatcaaccaaattccttgtgtggaactgggcgatccggtggaacgc
ggtgaaatcttggcagacggtccttccaccgatttaggtgaattggcattaggtcaaaac
attcgcgtggcgttcatgccgtggaacggttataacttcgaagactccatgttagtctcc
gaacgtgtggttcaacaagatcgcttcaccacgattcacatccaagaactttcttgtgta
gcgcgtgataccaaattaggcgcggaagaaattaccgcagatattcctaacgtcggtgaa
gccgcactaagtaagttggacgaatccggtatcgtgtatatcggtgcggaagtgaaaggc
ggcgatattctggtaggtaaagtgacaccgaaaggtgaaacccaattaacgccggaagaa
aaattattgcgtgcgatcttcggtgaaaaagcctccgatgtgaaagactcctctctacgc
gtaccaaacagcgtttccggtacggttatcgatgtgcaagtgtttacccgcgatggtgtg
gaaaaagacaaacgtgcgttagaaattgaagaaatgcaattaaaacaagcgaaaaaagat
ttgagcgaagagtttgagatcttggaagccggcttgtttatgcgcgtacgcaatctgttg
ttatccggcggtttcgatgcgaaatccttggataaattagaccgcactaaatggttggaa
caaactttagataacgaagaaaaacaacaccaattagagcagttggcggaacagcacgaa
gaattacgcaaagaatttgaacgtaaattggaaattcaacgcaacaagattatccaaggc
gacgatttggcaccgggcgtgttaaaagtggttaaagtgtatcttgcggtgaaacgtcaa
attcaaccgggtgataaaatggcgggtcgtcacggtaacaaaggggttatctccaaaatt
aacccggtggaagacatgccatacgatgaaaacggtcaacctgttgagatcgtattgaac
ccgctgggcgttccgtcccgtatgaatatcggtcaaatcttggaaactcacttaggtttg
gcggcgaaaggtattggcgatcaaattaacgcgatgattaaacaacaacaatctatcgcg
aaattgcgtgaatacatgcaaaaagcctatgaccttggcggcggttcacaaaaagtggat
ctcagcacctttaccgatgaagaagtgatgcgtttggcgcaaaatctgcgtaaaggtttg
ccggttgctacaccggtatttgacggtgcacatgaaaaagaaatcaaaggtttgttagag
cttggtggtttaccgacttccggtcaaattaccctttatgatggtcgcacaggtgaaaaa
ttcgagcgtccggtaaccgtaggttatatgtatatgctcaaattgaatcacttggttgat
gacaaaatgcacgcgcgttcaaccggttcttatagtcttgttacccaacaaccgttgggc
ggtaaggcgcagttcggtggtcaacgtttcggtgaaatggaggtgtgggcacttgaggct
tatggtgcggcttataccttacaagaaatgttaaccgtgaaatccgatgacgtgaacggt
cgtacgaagatgtataaaaacatcgtcagcggcaaccaacaaatggatccgggtacaccg
gaatctttcaacgtaatcatgaaagaaatccgttcacttggtatcaacatcgacttggac
gaagaataa
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