Alteromonas australica DE170: EP12_18000
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Entry
EP12_18000 CDS
T03858
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EP12_18000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaus03021
]
EP12_18000 (rpoB)
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_18000 (rpoB)
Enzymes [BR:
aaus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EP12_18000 (rpoB)
Transcription machinery [BR:
aaus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EP12_18000 (rpoB)
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EP12_18000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AJP45240
LinkDB
All DBs
Position
complement(3996791..4000819)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRVSARHTRALEKAGLTELEVPADYLIGRVFAA
TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSEERYDLSSVGRMKFNRRLGREELIGSGT
LDREDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQYAIAQANIALTENGELVDDLIPCRHRGETTLMPTEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEEEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVT
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARARNAFNRAGVDQAKLDSMPREKWFEIALNDEDAQLEIDQIADQHA
EIKEDFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
ELREFLKKVYELGENHQEVDIDNFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK
LADIPESGQISLFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
atcgacgcagatgctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agttactcaggtaattcagagcttcaatatgtaagctaccgcctgggagagccagtattt
gacgttaaagaatgtcaaattcgcggtgtaactttctctgctccgttaagagtaaaacta
cggttagtgttgttcgataaagacgctgccccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccattgatgaccgagaacggtacgttcgttatcaatggt
actgagcgtgttatcgtgtcacagctacaccgttcacctggtgtcttctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgctttataacgcacgtgtaattccttaccgt
ggttcgtggttagactttgagtttgacccgaaagataacctatttgttcgtattgaccgt
cgtcgtaagttgcctgcaacaatcatcttacgcgcgctagaaatgacgtcagaagagatc
ttagataccttctttgacaaagttagcgtacggattgataaagacaagttaatgatggaa
gtggtgcctgatcgcctacgtggtgaaacagccgcctttgatatcattgatggcgaaggc
aacgtggttgttgaaaccggacgtcgtgtttctgctcgtcacactcgtgccttggaaaaa
gccggtcttactgagctagaagtacctgcagattacctgattggtcgtgtatttgctgct
acttacgtcaatgaagacactggcgaagtcattgttagcgcgaacgacgaactcactctt
gaaaaccttgctgcgttaagccaagcgggcattaaagagttcgaaacgctttacatcaac
gaattagatcacggttcatacatctctgacacactacgtatcgattcatcaactaaccgc
ctagaagcgcttgttgaaatctaccgtatgatgcgtcctggtgagccaccaacgaaagat
gcagcagaaaccttgtttgacaacttgttcttctctgaagaacgttatgacttgtcatct
gttggtcgtatgaagtttaaccgtcgtctgggtcgtgaagaacttattggttctggcaca
ctagatagagaagacattatttctgttatgaaacagctaataatgattcgtgatggtaaa
gacgaagttgatgatatcgatcacctaggtaaccgtcgtatccgttctgtaggagaaatg
gcagaaaaccaattccgtgttggtttagtacgtgttgagcgtgctgttaaagagcgtcta
agcttaggtgatcttgacaatgttatgccacaagacctaattaacgctaagcctatctca
gctgccgttaaagagttctttggttcatcacagctttctcagttcatggaccaaaacaac
ccgttatcagaagtaacgcacaaacgtcgtatttctgctttaggtccgggtggtcttacc
cgtgaacgtgctggcttcgaagttcgagacgtacacccgacccactacggtcgtttatgt
ccaatcgaaacccctgaaggcccgaacatcggtctaatcaactcattggcgagcttcgcg
cgcaccaatgatttcggtttcttagaaacaccgttccgtcgtatcgtagacggtgtggtt
actgacgaaatcgattatttatctgcgattgaagaaggccaatacgccattgcacaggcg
aacattgcgctaactgaaaatggtgagctagttgatgaccttattccttgtcgtcaccgc
ggtgaaactaccttgatgcctacagaagacatcaaatacatggacgtttcaccacagcaa
atcgtttcaattgcggcaagtattatcccgttccttgaacacgatgatgctaaccgcgca
ctgatgggtgccaacatgcaacgtcaggctgtaccaacgctacgcgcagataagccgcta
gtaggtacaggtatggaacgtactatcgcggtagactcaggtgtaactgttgtcgctaaa
cgtggtggtgtggtcgattacgttgacgcaagccgtatcgttattaaagtcgatgaagaa
gaaatgcttcctggcgaagcgggtatcgacatctataacctgactaagtacacccgttct
aaccagaacacctgtatcaatcagaagcctacgtgtagcgtgggtgaccctattgtgaca
ggcgatgtactcgctgatggtccttctacagacttaggtgaccttgctctaggccagaac
atgcgtatcgcgttcatgccttggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcacaagaagaccgtttcactacgattcacattcaagagctaagctgtatt
gctcgtgatactaagcttgggccagaagaaatttcttctgatatcccgaacgtaggtgaa
tctgcattaagcaagcttgatgaatcaggtgttgtttacattggtgcagaagtgaaaggc
ggtgacattctagtaggtaaggtaacacctaaaggtgaaactcaacttacgccagaagag
aagctattaagagctatcttcggtgagaaagcgtctgacgttaaagacacgtctctacgt
gtacctaactcagttcacggtaccgttatcgacgttcaagtatttacccgtgatggtgta
gagaaagacaaacgcgcgcttgaaatcgaagacatgcaacttcgtcaggttaagaaagat
cttactgatgaatttgaaatcttagcggatggtatctttgcacgtgctcgtaacgcattt
aaccgcgctggtgttgatcaagctaagcttgacagcatgcctcgcgagaagtggttcgaa
attgcacttaacgatgaagacgcacagctagagattgaccaaattgcagatcagcacgct
gaaattaaagaagacttcgataagaagtttgaaaccaagcgtcgtaagatcacgcaaggc
gatgacctagcaccaggtgttcttaaaattgttaaggtttacctagcggttaaacgtcac
atccaaccgggtgataaaatggccggtcgtcacggtaacaaaggtgttatctcgactatc
cagccagtagaagacatgccatacgatgctaacggtacgccggtagatatcgtgcttaac
cctctaggtgtaccgtctcgtatgaacatcggtcagatcttagaaactcacttaggcatg
gcagcccatggtctaggtgtgaagattgaccgcatgattaaagagcagcgtgagttggca
gaattacgtgaattcttgaagaaggtgtacgaacttggtgaaaatcaccaagaagtggac
atcgataacttcactgatcacgaagttcgtcgcttagcagaaaacctacgtaaaggtgtt
ccagtagcaacacctgtatttgacggtgcacgcgaatctgaaatcaaagaaatgttaaag
ctagctgatattccagaaagcggtcagatttctttgttcgacggtcgtactggtcgcgag
tttgagcgtcctgtaaccgtgggttacatgtacatgctgaaactgaaccacttagtagac
gacaagatgcacgcgcgttctactggttcgtacagccttgttacgcaacagccgctgggt
ggtaaagctcagtttggtggtcagcgcttcggtgagatggaagtatgggcccttgaagct
tacggtgcagcatatacccttcaggaaatgcttactgttaagtcggatgatgttaacggc
cgtactaagatgtacaagaacatcgtcgatggcgaccacagaatggagcctggcatgcca
gaatcattcaacgtattacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa
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