Paracidovorax citrulli: Aave_0181
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Entry
Aave_0181 CDS
T00451
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aave_0181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aav03019
]
Aave_0181
03400 DNA repair and recombination proteins [BR:
aav03400
]
Aave_0181
Enzymes [BR:
aav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aave_0181
Messenger RNA biogenesis [BR:
aav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aave_0181
DNA repair and recombination proteins [BR:
aav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Aave_0181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM30793
UniProt:
A1TIK5
LinkDB
All DBs
Position
201563..203680
Genome browser
AA seq
705 aa
AA seq
DB search
MVAALPACGTEHNRHLACVQRSGSAGTPSCPAPCPAPLPRGHPRRHRPESSTALSPAHFV
LHDVFGYEHFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIVRRDAGKGVAIVVS
PLIALMHDQVGALHEAGVDAAYLNSTLDWQQTQELERRVARGDITMLYAAPERLTTPRFL
ELLDGLHQRGQLSMFAIDEAHCVSQWGHDFRPEYRALTVLHERYPGVPRIALTATADALT
REDIVERLQLEGAQHFVSSFDRPNIRYTIVEKREPLAQLLRFIEREHPEDAGVVYCQSRK
RVEEMSAALVDAGLKSLPYHAGLPPEVRQENQDRFLREEGIVMVATIAFGMGIDKPDVRF
VAHVDMPKNIEGYYQETGRAGRDGLPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRG
KLDALLGLAEATDCRRVRLLGYFGEVYGEPSSAAGPPQGASGPLGGQRGHEVPSVGATCG
NCDNCLNPPAVWDGTDAARKLLSTIYRVHEASGLTFGTGHIMDIVRGKDTEKVKQFGHDR
LSTFGLGKDYTEAQLRGVLRQLLATGAVGLHKVMLESGHSFDTLSLTEGSRPVLKGQVPV
MLRESAAAPPARRTRRTAAPPVAAANLDPDAQVRFINLKAWRAEVAREHNLPAYVIFHDA
TLAAIAERRPASLADLQGISGMGAKKLEAYGEDVLRVCRQGAAVS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggttgccgcgcttccagcctgcgggacggagcacaataggcaccttgcctgcgtgcag
cgcagcggctccgccgggacgccgtcctgccctgcaccctgccctgcgccactgccgcgc
gggcacccccgacgccatcgaccagagagttccaccgccttgtcccccgcgcatttcgtc
ctgcacgacgtcttcggctacgagcatttccgcggcccgcagcaggccatcgtcgagcac
gtgatcgccggtggcgacgcgctggtgctcatgcccacgggtggcggcaagtcgctgtgc
taccaggtgccggccatcgtgcggcgtgatgcgggcaagggcgtggccatcgtcgtctcg
ccgctgatcgcgctcatgcacgaccaggtgggcgcgctgcacgaggcgggggtggatgcg
gcctatctcaattcgacgctcgactggcagcagacacaggaactggagcggcgcgtggcg
cgcggcgacatcaccatgctgtatgccgcgcccgagcgcctgaccacgccgcgcttcctg
gagctgctcgacggcctgcaccagcgcgggcagctctccatgttcgccatcgacgaggcg
cactgcgtgagccagtgggggcacgacttccggcccgaataccgcgcgctcaccgtgctg
cacgagcgctacccgggcgtgccgcgcatcgcgctcaccgccacggccgacgcgctcacg
cgcgaggacatcgtggagcggctgcagctcgagggcgcgcagcacttcgtctccagcttc
gaccggcccaacatccgctacaccatcgtcgagaagagggagccgctcgcgcagctgctg
cgcttcatcgagcgcgagcacccggaggacgcgggcgtggtctattgccagtcgcgcaag
cgcgtggaggaaatgtccgccgcgctggtcgatgcgggcctcaaatcgctgccctaccac
gccggcctgccgcccgaggtgcgccaggagaaccaggaccgcttcctgcgcgaggaaggc
atcgtcatggtggcgaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttc
gtggcccacgtggacatgcccaagaacatcgagggctactaccaggaaacgggccgcgcg
ggccgcgacgggctgcccgccgatgcctggatggcctacggcctgcaggacgtggtgaac
cagcgccgcatgatcgacgagagccccgcgggcgaggaattcaagcaggtcatgcgcggc
aagctcgacgcgctgctgggcctggccgaggccacggactgccggcgcgtgcggctgctg
ggctacttcggcgaagtctacggcgagccatcgagcgccgccgggccgccccaaggcgcg
agcggccccctcggggggcagcgaggacacgaagtgccgagcgtgggggcgacatgcggc
aactgcgacaactgcctgaacccgccggcggtctgggacggcaccgacgccgcgcgcaag
ctgctgtccaccatctaccgcgtgcacgaggcgagcggcctcacattcggcaccgggcac
atcatggacatcgtgcgcggcaaggacaccgagaaggtcaagcagttcggccacgacagg
ctttccaccttcggcctcggcaaggactacaccgaggcgcagctgcgcggggtgctgcgg
caactgctggccacgggggccgtgggcctgcacaaggtgatgctggaaagcggccacagc
ttcgacacgctgagcctcaccgaaggttcgcgcccggtgctcaagggccaggtgcccgtg
atgctgcgcgaatcggccgccgcgccgcctgcccggcgcacgcggcgtaccgcggccccg
cccgtggccgcggccaacctcgatccggatgcgcaggtgcgcttcatcaacctcaaggcc
tggcgcgccgaggtggcgcgcgagcacaacctgccggcctacgtcatcttccacgacgcc
acgctggccgccatcgccgagcggcgccccgcgtcgctggccgacctgcagggcatcagc
ggcatgggcgccaagaagctggaagcctacggcgaggacgtgctgcgcgtgtgccgccag
ggcgccgcggtgtcctga
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