Paracidovorax citrulli: Aave_1580
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Entry
Aave_1580 CDS
T00451
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aav
Paracidovorax citrulli
Pathway
aav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Aave_1580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aav03400
]
Aave_1580
Enzymes [BR:
aav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aave_1580
DNA repair and recombination proteins [BR:
aav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Aave_1580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ABM32169
UniProt:
A1TMI1
LinkDB
All DBs
Position
complement(1743583..1747074)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLPKLIPGKRFTMPRPVGSADALLLARVAEREKAARRTTAIVTADATDAQRLIDEMAFF
APELRCALFPDWETLPYDTFSPHQDLISERLATLWRISQKDRDTGADVVLVPATTALYRL
APPSFLAAYTFHFKVRQKLDEAKFRAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDAARAKFRSRWRELLEG
DPTKSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGEDATVVLHGDLEPAFQRFWHD
TKERFRLVQGDPDRPALPPESLFLGIEQFYTRANVHAQLALRPGVEDVADNADFQKLGDL
SVVRGAEDPLARLHAHIRDTRHRVLLLAESDGRRESLLDFLRASQLNPPAFDSLAEFQGQ
ADEKVGIATAALATGFAWVGEGIDFVTETELFAAGATTRRRKKQEQVSDVEALIKDLSEL
TLGDPVVHSAHGIGRYRGLIHMDVGQKNPDGTPAMQEFLHLEYADKAVLYVPVSQLQLIS
RYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPQDY
EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITAAIKGIGDGTVDIVVGT
HKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGESQSGNMLEVGFQLYNEMLAEAVKSLKAGKEPDLLAPLSVTTDINLHAPA
LLPDDYCGDVHLRLSFYKKLATAKTADQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVIKVDAAPGVTNITFRPQPPVDPMQIIHLIQKNRHIKLAGNEKLRIERELPDAKDR
AQMVRDVLRSLGQPLGAAQGAPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacctccccaaactcatccccggcaaacgtttcaccatgccgcgccccgtgggcagc
gccgacgccctgctgctcgcgcgcgtcgcggagcgcgagaaggccgcccggcgcaccacc
gccatcgtcacggccgacgccaccgacgcgcagcgcctgatcgacgagatggcgttcttc
gcgcccgaactgcgctgcgcgctgtttcccgactgggaaacgctgccctacgacaccttc
tcgccgcaccaggacctcatcagcgagcgcctggccacgctctggcgcatcagccagaag
gaccgggacaccggcgccgacgtggtgctggtgccggccaccacggcgctctaccgcctc
gcgcccccctcgttcctcgcggcctacaccttccatttcaaggtcaggcagaagctggac
gaggcgaagttccgcgcccagctcacgctggccggctacagccacgtctcgcaggtggtg
agccccggcgaatacgcagtgcgcggcggcctgatcgacctgttccccatgggctcgccc
gtgccctaccgggtggacctgttcgacgacgagatcgactccatccgcactttcgatccc
gacacgcagcgcagcctgtatcccgtgccggaagtgcgcctgctgcccggccgcgagttc
cccatggacgatgcggcccgggccaagttccgcagccgctggcgcgagctgctggagggc
gacccgaccaagagccgcatctacaaggacatgggcaacggcgtggccaccgccggcatc
gagtactacctgccgctcttcttcgacgagacggccaccgtgttcgactatcttggagag
gacgccaccgtggtgctgcacggcgacctggagccggctttccagcgcttctggcacgac
acgaaggagcgcttccgcctggtgcagggcgaccccgaccggcccgcactgccgcccgag
tcgctgttcctgggcatcgagcagttctacacccgcgccaacgtgcatgcgcagctcgcg
ctgcggccgggcgtggaggacgtggccgacaacgctgacttccagaagctgggcgatctg
tcggtggtgcggggcgccgaggatccgctggcgcgcctgcatgcgcacatccgcgacacg
cggcaccgggtgctgctgctggccgagagcgacggccggcgcgagagcctgctggacttc
ctgcgcgcctcgcagctgaacccgccggccttcgattcgctggccgagttccagggccag
gctgacgagaaggtcggcatcgccaccgccgccctggccacgggcttcgcctgggtcggg
gaaggcatcgacttcgtcaccgagaccgagctgttcgcggccggcgccaccacgcgccgg
cgcaagaagcaggagcaggtgagcgatgtcgaggcgctcatcaaggatctgtcggaactc
acgctgggcgacccggtggtgcacagcgcgcacggcatcggccgctaccggggcctgatc
cacatggacgtgggccagaagaaccccgacggcacgcccgcgatgcaggagttcctgcac
ctcgaatacgccgacaaggccgtgctgtacgtgccggtgagccagctgcagctcatcagc
cgctacacgggcgtgtccgccgacgaggcgccgctgcacaagctgggcagcggccaatgg
gagaaggccaagcgcaaggccgcagagcaggtgcgcgattccgccgccgagctgctcaac
atctacgcccgccgcgcggcgcgcgagggccacgccttccgctacagcccgcaggactac
gagcagttcgccaacgatttcgggttcgaggaaacggccgaccagaacgccgccatccac
gcggtgatccaggacatgatctcgccccgccccatggaccggctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggcactgcgcgccgccttcgtggccgtcaccggcggcaag
caggtggcgttcctcgcgccgaccacgctgctggccgagcagcactaccagacgctggtg
gaccgcttctccaagtggccggtgaagatcgcggaggtctcgcgcttccgctcgggcaag
gagatcacggcggccatcaagggcatcggcgacggcacggtggacatcgtggtgggcacg
cacaagctgctttccgaatccacgaagttccacaacctgggcctgctcatcatcgacgag
gagcaccgcttcggggtgcgccacaaggagcagatgaagcagctgcgcgccgaggtggac
gtgctcacgctcaccgccacgcccatcccgcgcacgctgggcatggcgctggaaggcctg
cgcgacctgtcggtgatcgccaccgcgccgcagcggcgcctggcgatcaagaccttcgtg
cgcaacgagggcacgggcgtgatccgcgaggcggtgctgcgcgaattgaagcgcgggggc
cagtgctacttcctgcacaacgaggtcgagacgatcgagaaccggcgccagaagctcgag
gagatattgcccgaggcgcgcatcgccgtggcccacggccagatgcccgagcgcgagctg
gagaaggtgatgcgcgacttcgtggcgcagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccacggccaacaccatcatcatgagccgcgccgacaag
ttcggcctggcgcagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgccggacgtggacggcctgaccaagcaggccgcccagcggctg
gacgccatccagcagatggaggaactgggctcgggcttctacctcgccatgcacgacctg
gagatccgcggcgcgggcgaggtactgggcgagagccagagcggcaacatgctggaggtg
ggcttccagctctacaacgagatgctggccgaggccgtgaagtcgctcaaggccggcaag
gagcccgacctgctcgcgccgctgtctgtcaccacggacatcaacctgcatgcgccggcc
ctgctgcccgacgactactgcggcgacgtgcacctgcggctgtcgttctacaagaagctc
gccaccgcgaagaccgcggaccagatcgacgccctgctcgaagaaatcgtggaccgcttc
ggcaagctgccgccgcaggcgcagacgctgatcgacgtgcaccggctgcgcgtgctgtcg
cagccctacggggtcatcaaggtggatgcggcaccgggcgtgacgaacatcacgttccgg
ccccagccgccggtggacccgatgcagatcatccacctgatccagaaaaataggcacatc
aagctcgcgggcaacgaaaagctgcgcatcgagcgcgaactgccggacgcgaaagaccgg
gcgcagatggtgcgcgacgtgctgcgcagcctgggccagcccctgggggctgcgcagggc
gctccggcctga
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