Trichophyton benhamiae: ARB_05467
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Entry
ARB_05467 CDS
T01611
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
abe
Trichophyton benhamiae
Pathway
abe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARB_05467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abe03019
]
ARB_05467
Messenger RNA biogenesis [BR:
abe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
ARB_05467
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
ARB_05467
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
DUF7512
Motif
Other DBs
NCBI-GeneID:
9524059
NCBI-ProteinID:
XP_003016070
UniProt:
D4AML4
LinkDB
All DBs
AA seq
2365 aa
AA seq
DB search
MTFPSPSHSAQSSIASGSDQPTTARSSRLQPSAWGVPSSQASVRRPLTLATANLSSSTGT
SSPSRRTPAAGAVASPSHTSNPTPAPGPATSPLTSTFSAILSSGSRLPAARGNPSPAPTP
SPFASSFQAGAQHPSQQQSQQHSITSPKSTTPLPPSAVSHLATPTASAPGGGGSGGGGGG
GGGGTAVSRGATFSPLLTGTAVGSPTGFPSDKPSSATVSSTGGAGSSQSSLSKISVVQVF
LLLDSINEKEGKEKWETKAAQIHRLVNSNGMEVFSKYFRRLLSSNAGQIFSGANKNVDNS
GNYPLLVQEVQKVALDPDQGRKIAETIDTSEGDIFRDFDLSTFLDHFKLDPILKTALTLA
FKNVTKSDLRTKADAILSASLPQFLQSLSTISDSNKDSTPSFIALTIERLIFNPPRNFNE
DMKKKLIYDVRIRYQNADSEVPIEVDSALQMFSLTDPRLSLVRQIQARGPQSLGDPDTML
DTIKAAGSDAFSGEQIGNAILFIVLSQSWQQYPLDLLVSTLLKQHASQPINWPEAVRQFD
KDGLRVDNSQFARIFNALLPVAQEDNSLDLQMLWGGDWAHKNAQFSFLTAFLCAGIDTPG
IDTSQIPNFRSAFSSDIFDDASETVKLQAEQTKNNPLRSLDATKAIFDLILVSPATWALP
ESQNFVKTILQHDLPTFLCSAFAIPQPWTNVQHNFLVRSFMIFILKRQDGYQFALHGVWK
LNQQWVGEQLFHAFTQDPSCTDLIYEHAVEHGWLDYLLDFTNGLAMDLASLAHQKGSFDL
EQWVKGTAGKTPVDMGGLLAKFLRIKAEDELRVQRGEQPTPQMVSLSVKTVFALLMILED
YITDHENLTPIQRICLQTYPRLINYGEGFDDVIEANSVRGNAIPEDIDKKMRDLFGKMYH
EELSLREILELMRRYKSSREPAEQDLFTCMVHGLIDEYHCYHEYPLEALTKTAVMFGGII
NFKLISGIPLKVGLGMILDAVREHEPHESLYKFGVEAIEQLISRLPEWVGFCSLLLQIPS
LQGSNIHRKAEEVLREQGHHPINGVDGTEANGVTDGLSLANGSVNELVNEGSPRKFQSLH
VGPPLRPDIYKEPDEDTHDKILFILNNVSEQNIKSKLQDLRESLKDEHHQWFASYLVEER
AKLQPNFQQLYLDLLELIDDKTLWAEVLRETYVSSIRLLNAESTMNSTIDRTHLKNLGGW
LGSLTIAKDKPIKHKNIYFKELLIEAFDSQRLTVAIPFTCKVLSQAMKSSIFKPPNPWLM
DIIALLIEIYHFAELKMILKFEIEVLCGDLELDHKTIEPSTCIRERPAQLHEGLPVACLP
EGLEAFDDMSLTGMNRGIRADRISPSIISNLPKLDQILVFPPSADPNTLKQIVHGAVERA
IAEIIAPVVERSITIASISAAQLILKDFAMEPDEEKVRQAAGTMVRALAGSLALVTCKEP
LKMSMTNYIRMIQQEYSDQPMPEGLILMCVNDNLDAACGIVEKAAEEKSLPEIEKVIESQ
LEARRRHRIARPNEAFIDPSMSRWALFIPEPYRQVPGGLNKEQLAIYEEFARQSRGAGPT
HIQHASTDSGKQIPDVLQEAFPGMPNLSTPADQSAIPHPASRGPQDADVQQQALAGTQPQ
INGFLEASTPREKIDGLVVELQHTTRSEKDEHIKDIARDSPILHSYNQVLRAILSSQNGE
ELARLAAMKICNALYTQTEKNLEIEVLVHLLTKICELSSLVARYVWAVLAEVDDGQMFNV
PVTVALIDAGLMDLHRIDMNIAKLIKDKSHAALELLSALMNRVLLNDEPSALRSDFSGSL
DALNQWVVEEPDLPLAREIIQTLRESGIPESANTLLSDLARSKRDQMEYIFSEWIGVYKF
PGSNDRMYSAFLKDMHHRQVMNTQEDSALFFRLSIDISVAMFEHEYQNVSGNIDEAFLYI
DALAKLVILLVKFQGDADGAVKASKSAYLNSILSLLVLVLNHHQVMRGDSFNQRVFFRLF
SSILCEYAASGLAQTDQHKGMMLAFADKFLSLQPKHIPGFIYGWLSLISHRVFMAEMLTL
DDQVGWEPFCEIMQVLLSYIGEQLKSASVTYVAKDIYKGVLRILLILHHDFPEFVAENHF
QFCTVIPTHCSQLRNLVLSAYPSSFQKLPDPFRDGLKVDRLEEMSKAPKITADIITPLQD
AMIKAPVDNALRNFNTADAAIQQISEIIYNPPARDTGLFFNPINVNTVLLEALVLYIGQS
AVSSSAQKPGTASFSNSPALGFLEKLVNMLRPEARYYLLSAIVNQLRYPNSHTHFFSFAI
LNIFGSETAAQHETHIREQIIRVLLERLIVHRPHPWGLIITLQELLQNGNYSFFRLPFIQ
AAPEIGRLFDALLQHIQQQSPRTLS
NT seq
7098 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcccttccccttctcactccgcccaatcctcgattgcttccggctccgatcag
cccactactgctcgatcttcgagactccagccgtcagcttggggcgtcccgtcgtctcaa
gcgtccgttcgtcgtcctcttacccttgcgacagctaacctatcttcttcaaccggtaca
tcctctccgtctcgccggacacccgccgcaggtgcagttgcatctccgtcccacactagc
aacccaacgcctgctcccgggcctgccacgtctccattgacctctacattctccgccatc
ctgagctcgggctctcggctcccagctgcgcgtggtaatccttcgccagccccaactcct
tctccctttgcttcttctttccaagctggcgcacagcacccttcacaacaacaatcacaa
caacattcaattacatctccaaaatctaccacaccacttcccccttcagcagtttcgcac
ctggcgaccccaacggcttccgcaccaggaggaggaggtagtggtgggggtggaggaggc
ggtggtggtggtactgccgtgtcaagaggcgccacgttctctcctttgttgaccggtact
gcagtcggctctcctaccgggtttccatccgataaaccgtcttccgcgacagtgtcgtca
acgggtggcgctggctccagtcaatcatcactctcgaagatatctgtagtccaggttttt
cttctgctggactcgatcaacgagaaagaagggaaagagaagtgggaaaccaaagcggca
cagattcacaggctcgtaaactccaacggtatggaagtgttctcaaagtacttccgccgt
ctgctctcaagcaatgctggccagatattttctggagccaacaaaaatgttgacaactcc
gggaattaccctttgttggtccaggaggtgcagaaggtggctctcgaccccgaccagggt
cgaaagatagcagagactatcgatacgtctgaaggtgacatattcagagactttgatctc
tccacctttctcgaccattttaaactcgatcccatactcaaaaccgctcttactcttgcc
tttaaaaatgtcacaaagtctgacctccgtaccaaagccgacgcgatcctatcagcatct
ctccctcaattcctccagagcctctccaccatctcagactctaataaagattcaacacca
tcctttatcgctcttaccatcgaacgacttatctttaatcccccccgtaattttaacgag
gatatgaaaaagaagcttatctatgatgttcgcatacgctaccaaaatgcagattccgag
gtcccaatcgaggttgattcggctttacagatgttttccctcacagatcctcgactgtcc
ctagtccgtcaaatccaggctcgcggtcctcaatccctgggtgatcccgataccatgctt
gacaccatcaaggccgctggttcagatgcgtttagcggggaacaaattggcaatgcaatc
ctcttcattgtactctctcagtcctggcaacagtatccactcgaccttttggtgtcaact
ctcctaaagcaacacgcttctcagccgataaactggccagaggctgtgcggcagtttgat
aaagatggacttcgtgtcgataactcccagtttgcaagaatattcaatgcgttgcttcct
gtcgcccaggaggacaattcactggatcttcagatgctttggggaggtgactgggctcat
aaaaacgctcagttctcctttttgactgcgtttctctgtgctggaattgacacacccggc
atcgatacatcacagatccccaacttccgttccgcctttagttccgatatctttgatgat
gcgtctgaaaccgtcaaactccaggcagagcaaaccaagaacaaccctctccgctccctg
gatgccacaaaagcgatttttgatctaatacttgtctcgcctgcaacatgggctcttcca
gagagccaaaactttgtcaagactatcctccaacacgacctcccaaccttcctctgctcc
gcatttgccataccccagccctggaccaacgtccaacataatttccttgtcagatcattc
atgatatttatcttgaagcgacaggatggataccagttcgctcttcacggagtttggaaa
ctcaaccaacaatgggtcggagagcaattgttccatgctttcactcaggatccttcttgt
actgatctgatctatgagcatgcagttgagcacggctggcttgactatctattggatttt
accaatggccttgccatggatcttgcttcccttgcccaccagaaaggttccttcgacctg
gagcagtgggtgaaggggaccgctggaaaaacgccagttgatatgggtgggttgctggcc
aagttcctcagaattaaggctgaagacgagttgcgagtgcagagaggggaacaaccaact
ccgcaaatggtcagcctatccgtcaagaccgtattcgctctcttgatgattctggaagac
tacatcactgaccacgaaaatctaacccctattcaacggatctgccttcaaacttacccc
agactaattaactatggtgaggggtttgatgatgttattgaggccaacagtgtccgggga
aatgccattcccgaggacatcgataagaaaatgcgtgatcttttcgggaagatgtaccat
gaagagctctctctccgggaaatccttgagcttatgagacggtacaaatcctctcgcgag
cctgctgaacaggaccttttcacctgcatggttcatggtctcatcgatgaatatcattgc
tatcatgagtatccgcttgaagctctcacgaagacggctgtcatgtttggtggcattatc
aattttaagcttatttctgggatacccttaaaagttggtcttgggatgattttagacgct
gtacgcgaacacgaacctcacgagtctctatataaattcggtgttgaagccattgagcag
ttaataagccggttgcctgagtgggttgggttttgcagcctcctacttcagatacctagc
cttcagggttctaatatccaccgcaaagcagaggaagtccttcgtgaacaaggtcaccat
ccgatcaatggtgttgatggaacggaagctaacggcgtaactgatggattgtccctcgct
aatggcagtgttaacgaacttgtcaacgaaggatcgccccgcaaattccagtctctacac
gtaggacccccacttcggccagatatctataaggagccagatgaagacactcacgacaag
atccttttcatcctgaacaacgtttcagagcaaaacatcaagtcgaaacttcaagatctt
cgagagagcttgaaggatgagcatcatcaatggtttgcttcgtatctcgtggaggagcga
gcaaagctacaaccaaatttccagcaactatacctagaccttttggaacttatcgatgac
aagacgttatgggcagaagtgcttagggaaacctacgtcagctctatcaggctactcaat
gcggaatcgacaatgaattctacgattgaccgcactcatctaaagaatcttggtggctgg
ctaggctctctgacaattgcgaaagacaagcccattaagcacaagaatatctacttcaag
gagctgcttatagaagcattcgatagtcaacgccttaccgtcgccattccgttcacctgc
aaggtcctgagtcaagccatgaaatcatcaattttcaaacctccaaacccgtggttgatg
gacatcattgcactattgattgaaatttaccacttcgctgaattgaagatgatccttaag
ttcgaaatcgaagtactctgtggagacttggaacttgaccacaagacaatcgaaccgtcg
acatgcattagagaacgcccagctcagctccatgaaggattacccgtcgcttgtctccca
gaaggattagaggcattcgatgatatgtcgctcactggcatgaaccgtggcatccgagcc
gatcgaatatctccttccattatctcaaacctccctaagctcgaccaaattcttgtcttc
ccgccatctgccgatcccaacactctaaaacaaattgttcacggtgctgttgaacgtgca
attgccgaaattattgcaccagtcgttgagcgctcgataaccatcgcctccatctcagct
gctcagttaatcttgaaggattttgccatggagccagatgaggaaaaagttcgccaggca
gcagggactatggttcgtgctcttgctggtagccttgctctcgttacttgcaaggaaccc
ctgaaaatgagcatgacgaactacatccgtatgatccagcaagagtactcggatcaaccg
atgccagagggtcttatccttatgtgcgtgaacgacaatctggatgctgcttgcggtatt
gttgaaaaggcagctgaggaaaagtctctcccagagatcgaaaaggttattgaatcacaa
cttgaggcccgtaggcgccatcgtatcgcgcgacccaatgaagcattcattgatccttct
atgagccgatgggctttgtttattccggaaccatacagacaggttcctggaggattaaac
aaagagcaactagccatatacgaagagttcgcccgccagtcgcgtggagcaggcccaaca
catatccagcatgcatcgacagactcgggtaaacaaataccagacgttcttcaagaagct
ttcccaggcatgcctaacttaagcaccccagcggaccaatccgcgattcctcaccccgct
agccgaggtccacaggatgcagatgttcaacaacaggcgcttgctggcacccaaccacag
atcaacggctttttggaagcgtctactccacgcgagaagattgacgggcttgttgttgag
cttcagcacaccacccgatccgagaaggatgaacatatcaaggacattgcaagggatagc
cctatcctccattcatataatcaggtcctcagagctattctctcatcccagaatggcgaa
gagttggcaagattggctgctatgaaaatctgtaatgccctttacactcaaaccgagaaa
aaccttgaaatagaagttctcgttcatctgttgaccaagatatgtgaactctcatcgctg
gtggcaagatatgtatgggcagtcctcgctgaggttgatgatgggcagatgttcaatgtc
ccagtcacggttgcccttatcgacgctggattgatggatcttcatcgaattgacatgaat
attgccaaactgatcaaggacaagagccacgccgcattggagttactatctgcattgatg
aaccgcgttttactgaatgatgaaccatcagcactacgatctgacttttctgggagtctg
gatgcgctgaaccaatgggttgtcgaagaacctgatcttccccttgctcgtgagatcatc
cagacccttcgagagtctggtattccagaatcagccaacactcttttgagcgacttggct
cgatcaaagagagatcagatggagtatatcttcagtgagtggattggcgtatacaagttc
cccggatccaacgacaggatgtatagtgccttcttgaaagatatgcaccacagacaggtc
atgaacacacaggaagactcagccttgtttttcaggctcagcattgatatatccgttgcc
atgttcgagcacgagtatcaaaacgtcagtggaaacatcgatgaggcattcttgtatatc
gacgctctcgccaagctggttatactattggtgaaattccaaggcgatgctgacggtgcg
gtcaaggctagcaagtcggcatacttgaattctatcctctctctgttggttttggttctc
aatcaccatcaagtcatgcgaggtgatagcttcaaccagcgagtatttttcagactcttt
tcgagcattctttgcgagtatgctgccagtggccttgcacagacagaccagcacaagggc
atgatgctggcttttgcagacaagttcttgtcactccagcctaaacacataccaggattc
atctacggatggctatcgcttatttctcaccgcgtgtttatggctgagatgcttaccttg
gatgatcaggtgggctgggaaccgttttgtgaaataatgcaagtgctgctgtcatatatc
ggcgagcagcttaaatccgcatctgtgacctatgtggccaaggatatctacaaaggagtg
cttcgaattcttttgattttgcaccatgatttcccggagttcgttgccgaaaatcatttc
caattctgcactgttatacccacccactgtagccaacttcgaaacctcgtgttgagcgct
tatccatcgtcattccaaaaattacctgatccgttccgtgacggcttgaaggttgatcga
ttggaggaaatgagcaaagcaccaaaaatcaccgccgacatcatcacaccactccaggat
gcaatgatcaaggcaccggtggacaatgcattacggaatttcaacactgctgatgctgct
attcaacaaatatcggagatcatttataatcccccggcaagagacaccgggctattcttt
aacccaatcaacgttaatacggttcttttggaggcacttgttctgtacattggtcagagt
gccgtctcttcatcagctcagaagcctggcacagcttctttcagcaactcccccgctctt
gggttcctggagaagttagtgaacatgctacgaccagaggcccggtattatctccttagt
gccattgtaaatcaactacgatatccgaacagccacacccatttctttagcttcgccata
ctcaacatcttcggctcagagactgcggctcagcatgaaactcatattcgcgagcagatc
atccgtgtattgctagagcgattgattgtccatcgacctcacccttggggtcttatcatt
acactccaagagctgttgcagaatggcaattactcattcttccgcttgccttttattcaa
gcggcgcctgagattggtcgtctgttcgatgctcttctgcagcacattcaacagcaaagc
ccccgcactctaagttaa
DBGET
integrated database retrieval system
