Akkermansia biwaensis: Abiwalacus_11940
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Entry
Abiwalacus_11940 CDS
T08790
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
abiw
Akkermansia biwaensis
Pathway
abiw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Abiwalacus_11940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abiw03021
]
Abiwalacus_11940 (rpoC)
03400 DNA repair and recombination proteins [BR:
abiw03400
]
Abiwalacus_11940 (rpoC)
Enzymes [BR:
abiw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Abiwalacus_11940 (rpoC)
Transcription machinery [BR:
abiw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Abiwalacus_11940 (rpoC)
DNA repair and recombination proteins [BR:
abiw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Abiwalacus_11940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDL43620
UniProt:
A0ABM7ZG10
LinkDB
All DBs
Position
complement(1490200..1494393)
Genome browser
AA seq
1397 aa
AA seq
DB search
MSDTPTIREMHGLSDKPKTFDQVAITVADPDTIRSWSHGEVVNPETINYRTFKPEKGGLF
CERIFGPTRDMECACGKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFY
KCMPSRIGLMLDLTARHLERVIYYEDYIVVDPGNTPLEKGAILTEEEFRNAEDEYGYDSF
EAGMGAEAIQKMLASIDLPSLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEW
MILNVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEK
RMLQEAVDALFDNGRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIV
IGPELKLNQCGLPKKMALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVT
KGHPVMLNRAPTLHRLSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEA
QMEARQLMLAPNNIFSPASGKPIATPTQDIILGAYFLTHTRAAEVQNYQDNHQHLPLFES
IDEVEYAIAARKIGYHDWIRLHNPDYGKKPSEVVYGDVTKKVIVTTAGRVRFNEIWPREL
GYINRNVGKKQMGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQ
KKTEIEKAYAELDKVTKQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLEHNEGSKM
ASPLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHG
ARKGLADTALKTADSGYMTRKLVDVAQDVIVYADDCGTNNGITVHAIYDGDEEVASLSSR
IYGRVSCERIVDPVSGEIIVDINDLINEKQAEQLEKIGIEQLKIRSVLTCELKKGCCAKC
YGLNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRV
IYTEDLRTVENVDGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGSIKKDETL
ATWDPYNVPVIAEKGGMVEFKDMIVGITVSKETDRETGTSTLVVMEHKQELHPQVVIRDV
KTREVLAHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLPRVAELFEARKP
KDACTIARVEGIVRLSSKNTSRGKKVITIETPTGELVDHLVPMNKHVIVHEDDHVHMGDQ
LTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIVRQMLRKVVITEP
GNTEFLWGDQVDKTTFDRINEQTIAQGGQPAAAKPVLLGITKASLETESFISAASFQDTT
RVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRYSKIEVDPAEGAEEIVLAGEDDEM
DSIEEVLNDTINFDNER
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacccctaccattcgggaaatgcacggtctgagcgacaagcccaagaccttt
gaccaggtagccatcaccgtggctgatccggataccatccgcagctggtcccatggcgaa
gtagtcaacccggaaaccatcaattaccgcacgttcaagccggaaaaaggtggcttgttc
tgcgaacgcattttcggccccacccgcgacatggaatgcgcctgcggcaagtacaagcgc
atcaagcacaagggcatcacctgcgaccgctgcggcgtggaagtgaccaacgcccgcgtg
cgccgcgaacgcatgggccacattgaactggccgttccggtgtcccacatctggttttac
aagtgcatgcccagccgcatcggcctcatgctcgacctgacggcgcgccatctggaacgc
gtgatctactacgaagattacatcgtggtggaccccggcaacactcccctggaaaagggc
gccattctgacggaagaggaattccgcaatgcggaagacgaatacggctatgacagcttt
gaagccggcatgggcgcggaagccatccagaagatgcttgcctccattgacctgccctcc
ctcgtggccgatctccaggaacagctggacaacaccaactccaagcagaacaagcgcaag
atcgccaagcgcctgaagctggcccagggcttccttcagtccaacacgcgcccggaatgg
atgatcctgaacgtgctgcctgtcatccctccggatttgcgaccgctggttccgctggaa
ggcggccgcttcgccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgcaac
aaccgcttgaagaccctcctgagcctgaaaactccggaagtcatcatccgcaatgaaaag
cgcatgctccaggaagccgtggacgccctgttcgacaacggccgccacggccgcgccgtt
acgggagccggcaaccgccccctcaagtccctttccgacatgctgaagggcaagggaggc
cgtttccgccagaacctgctgggcaagcgcgtggactattccggccgttccgtgatcgtg
atcggcccggaactgaagctcaaccagtgcggccttcccaagaagatggcgctcatcctg
tttgaacccttcatcatccaccgcctcaaggagctgggctatgtgcacaccgtgcgctcc
gccaagaagctgattgaccgcaagacgccggaagtgtgggacatcctggaagaagttacc
aagggccaccccgtcatgctcaaccgtgcgcccacgctgcaccgcctttccatccaggca
tttgaaccggtcctgattgaaggttccgccatccgcctgcacccgctcgtctgtaacgcg
tacaacgcggacttcgacggcgaccagatggccgtgcacgtgccgctttccgtggaagcc
cagatggaagcccgccaactcatgctggcgcccaacaacatcttctccccggcatccggc
aagcccatcgccacgcctacgcaggacatcattcttggcgcgtacttcctgacgcacacc
cgtgccgcggaagtgcagaattaccaggacaaccaccagcacctgccccttttcgaatcc
atcgatgaagtggaatacgccattgccgcccgcaagatcggctaccatgactggattcgc
ctccacaacccggactacggcaagaagccgtccgaagtggtgtacggagacgtaaccaag
aaggtgatcgtgactacggccggacgcgtgcgcttcaatgaaatctggccccgcgaactc
ggctacatcaaccgcaacgtgggcaagaagcagatgggcgacatcatctggcgctgctac
cagacggtgggcaaggaacgtaccgtgcagaccctggacgccctgaagaacctgggcttc
aaggaagctacccgttccggctgctccatcggcattgtggacatggtcgttccgtcccag
aagaagacggaaatcgaaaaggcctacgcagagctggacaaggtcaccaagcagtacaag
aacggtatcatcacggacggcgaacgctatcagaaggtggtggatatctggacccagact
acggacgtgatccaggcggccctgtaccgcaagctggaacacaacgaaggttccaagatg
gccagcccgctcttcatgatggtggattccggagcccgaggcaacaaagcgcagatcaag
cagctctccggcatgcgcggtttgatggccaagcccagcggcgaaattatcgaacgcccc
atcacggccaacttccgtgaaggcctctccgtgctggaatatttcatttccacccacggc
gcccgcaagggcctggcggacaccgccttgaagacggcggactccggctacatgacccgc
aagctcgtggacgtggcccaggacgtcatcgtttacgcggacgactgcggtacgaataac
ggcatcaccgttcacgccatctatgacggcgatgaagaggtggcctccctttcgtcccgc
atttacggccgcgtttcctgcgagcgtatcgtcgatcccgtcagcggcgagatcatcgtg
gacatcaacgacctcatcaacgagaagcaggcggaacagctggaaaagatcggcattgaa
cagctgaagatccgttccgtgctgacctgcgaactcaagaagggctgctgcgccaagtgc
tacggcctgaacctggctaccggccaggaagtgaagatcggtgaagcggtcggcatcatc
gccgcccagtccatcggcgagcccggcacccagctgaccatgcgtacgttccacgtgggc
ggcacggccactacggcgttcaagcagcctatcgtgaaggcgaagaacgacggccgcgtg
atctacacggaagacctccgcacggtggaaaacgtggacggcaacttcgtggttctgaac
aagaactgctccgttcgcattgaaaacgaacagggccgcgagctggaatcctaccagccc
gtcatcggcaccatcctgtacgttcccaacggcggctccatcaagaaggatgaaaccctc
gccacatgggacccgtacaacgtgcccgtgatcgctgaaaagggcgggatggtcgagttc
aaggacatgatcgtggggatcaccgtttccaaggaaacggaccgtgaaaccggtacgtcc
accctcgtcgtgatggaacacaagcaggaactccacccgcaggtggtcatccgcgacgtc
aagacccgcgaggttctggcccaccacgccattcccgccggggccaacctgaccgtgaag
gacggagagaccatttccgccggcaccatggtggccaagacgccccgcaaggtggccaag
acgaaggacatcaccggcggtcttccccgcgtggcggaactgtttgaagcccgcaagccc
aaggacgcctgcaccatcgcacgcgtggaaggcattgtgcgcctcagcagcaagaacacc
tcccgcggcaagaaggtcatcaccattgaaacgcccacgggcgaactggtggaccatctg
gtgccgatgaacaagcacgtgatcgttcacgaagacgaccacgtccacatgggcgaccag
cttacggaaggccccgtttctccggaagaaattctggatgtctgcggcaaggaacgcctc
caggagcacctcgtcaacgaagtgcaggaagtgtaccgcctccagggtgtggagatcaac
gacaagcacgtggaaatcatcgtgcggcagatgctgcgcaaggttgtcatcacggaaccc
ggcaacaccgagttcctgtggggcgaccaggtggacaagaccacctttgaccgcatcaac
gaacagacgatcgcccagggtggccagccggccgccgccaagcccgttctgctcggcatc
acgaaggcctccctggaaacggaatcctttatctccgccgcgtccttccaggacaccacg
cgcgttctgaccgaagcttccaccctcggcaagaccgacacactggaagggttcaaggaa
aacgtcatcatgggccacctcattcccgccggtaccgggttctcccgctacagcaagatt
gaagtggatcccgcggaaggagctgaagaaatcgtgctcgccggcgaagatgatgaaatg
gactccattgaagaagtcctgaacgataccatcaacttcgacaacgaacgctag
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integrated database retrieval system
