Agaricus bisporus var. bisporus H97: AGABI2DRAFT115297
Help
Entry
AGABI2DRAFT115297 CDS
T03140
Symbol
AGABI2DRAFT_115297
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI2DRAFT115297 (AGABI2DRAFT_115297)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abv03019
]
AGABI2DRAFT115297 (AGABI2DRAFT_115297)
Messenger RNA biogenesis [BR:
abv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AGABI2DRAFT115297 (AGABI2DRAFT_115297)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AGABI2DRAFT115297 (AGABI2DRAFT_115297)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
Sugar_tr
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
MFS_1
NOT1_connector
TRI12
FdhE_N
Motif
Other DBs
NCBI-GeneID:
18076597
NCBI-ProteinID:
XP_006458285
JGI:
Agabi_varbisH97_2_115297
LinkDB
All DBs
Position
Unknown
AA seq
2508 aa
AA seq
DB search
MSNFVFSFVTAIFTVGGLLGSLVANIFMDRLGRKGASQVTALFHIVGAGLMGVSGSVTTL
SFGRFLIGVGSGIGICVAPIYAAEIAPSTISGNIGVLTQLGIVLGIMSTQIVGFRYSTPT
EWRFVLFLSSAISCVQFVTGYMIVESPAWLGMQNRSEEKKTVSERIWRANATRATPSMVS
DENPLLEDVEARRPETSTNTTTVLQLFFTPELRKPLMITCFAMMSQQISGVNAVLYYSNE
ILSKSLPDLGPYVSLGITVVNVIMTFPPIFLIERVGRKSLLGISTIGALASLASIGFGLN
NDHSTMTSIATLTFIMSFAVGLGPIPFVLIPEAVSALSSMALSFNWVTNFFVGLVFLPLR
SFLSDGDPTKEGRVFYVFRRSSSSSLYLTCSTSFKTATGPGSAARRSVTPSRSSSHMDSP
PTTNIHTIVKAQIVFLLSTLTEENFERNQLEIRSLSEQHGLETYLHFIRRLIVHSQQRLT
SATPAFGGTDALTFRLLVSESQRIGRDPILADRFREGIDKGDGDIFRHFDLVRFVDRVGL
RPLERLVLASAFVSTPTRKELANQAASIIRLEFESAVLSICHTAPFENADLSLNSLAKVM
ANVLSDPPSDAPVLDAQQRQALILAAQTKYGKDAISPILRRIFTHLSLPPGTSLVQALVQ
LGADITSDPDLVRALLELFGFTEQNPPREGQVIDIVSTLGRLAVEGSPLCDVGALTRTLA
SFHVKPSWPIVIKSFDRPDRHGVDTATLKFLISILLNAPRDVEPHAVTGFWETWNNPLYQ
LRLLDALLSLPSDTFSFVSLPGHRIVTVDDVTIASPTIRALAANVQSHTWNSLELFQVLV
RLAGSDSVEIRACVREMLDKAIKISAELVHMGLLQVPDPKWNDIRLEYSRKLLSMFLAGH
PNHQLVFMRIWQINPGYLTTAFREFYDDNNLNITRILDVAQDLKILEALLEVQPFTFALD
VAALASRREYLNLEKWLQDHVTRYDGEFLHSVIAFLEAKMDSEKACRLSETPMESRTMPL
NAHVVTVILRVLRSSTEHMFEGDVEACLEVRNTCLQIHPRLMNLIPGNETEPGFAVMSYP
ADIEAEVDNIYKQMYDTATSIDDVINMLRRFKASKNPRDHELFSCMLHFLFDEYRFFQSD
YPSRELALTAYLFGSLIRHQLIDYIPLGIAIRYIIDALGCAPHTNLFKFGMQALNQFEFR
LVEWRPLCETLLQIPHFVEARPDFAANIQHILATGGTTDHVDLQMLTLASSNEPVPEPSP
VFISIKADKIEEEIIPPPEELSDKILFIVNNLAPSNFDAKIEEMREQFVDDYSRWFAHYL
VDQRVSSEPNNHTLYLRFLDSLNRKDLYRYVLHETFVKAQAMLNAERTLQSGSDRGTLKN
VGSWLGTITLARDQPIKHKNLSFKDLLIEGYTSNRLIVAIPFVCKTLEPCARSKIFRPPN
PWLMAVVSLLAELYHHAELKLNLKFEIEVLCKALDINLDSIEATRVIRSRPTENFPDYGG
DLAPGVVGDGLMQDGVMLPPQNDNQRTINNHIEGILSALSLQVHIDPQLSPFNVNQAFKR
AVQLAVDQSVRDIIVPVVERSVTIAGISTRELVTKDYATEPNEEKLKKAGHLMAQKLAGS
LALVTCKEPMRTNLTTQLRQFLNNQGFTEQLVPEQVIHVLIRDNLEIACAAIEKVAMERA
VADVEDNFAVSIESRRRHRELRNPGPYYDPNTPHSSFALGLPEPLRIKSGGVQNVQAAVY
EDFAAQLRPNVSRPSSANSYPYGNQSPSLEHEVSDESMHGHREIMDRFQVFTRDLEAIMI
QLPIQSLSALPPSHDVRHLVRQILYLAVEASDRPHTPLIMSQAIVKKLYNTPSQLGREVY
VALLEQLCHSFEEVAKEAIEWLLYANDERKYIVPVTIALLKSQLINIGVTDQQLAKSLSS
DPRPSLLTYAAGLIRECLTTDPPVASQHQFPYTIDVLDQISKAGKANEDVNRLLDDLRGV
RRTPAVVDVIPRQPSANAETEQLRDKLYIWFQQWVNIFQRSHSPEKSFVPFITQLTKQGI
LKVEDMSSLFFRVCAEASVNSYVKCVASNDFAYAFQALDAMSRLIVYIIKYHGDASGVNN
DQAKVHYLTKILSIFVLVLANLHEEQGAAFQQKPFFRFFSSLVNDLHSIENHLGPVYFHL
LVAISDTYSSLQPIYFPGFAFSWMCLVSHRLFMPKLLMSENREGWSAFHKLLVSLFKFLA
PFLKDADLQNAAKDLYRGSLRLLLVLLHDFPDFLSEYYFTLCDVIPQRCIQLRNIILSAF
PPAIPLPDPNLRNQKFDSIPEMGPIPPILSDFSSGLKGGELRTHLEQYLLGRSSASFLLS
LKDRLKSQASEDATEAYNLSLINSLVMFIGVSSVAQAKARSGSSLFVASDPGVVALQYLV
TQLDDEGKHCLLSSMALHLRYPNAHTHWFSSLMLHLFLEVMDDRFREIMTKVLLERFIVH
RPHPWGALVTFIELLRNPKYEFWSKEFVGIAPEVTVLLDSVAESISQQ
NT seq
7527 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacttcgttttctcgttcgtgacagctatcttcactgtaggtggcctcctgggt
agccttgttgcgaatatcttcatggatcgcctcgggcgcaaaggagcgtctcaagtgacc
gcactgtttcacatcgtcggtgcagggcttatgggtgttagcggttctgttactactctc
agctttggcagattccttattggtgtcggttcaggcataggtatttgcgttgcaccaatc
tatgctgctgagattgccccttccacaatcagcggaaatattggcgtgttaactcagcta
ggaatcgtcctgggcatcatgtccacacagatcgtcggatttcgatattcaacgccaact
gagtggcgtttcgtgcttttcttgtcctcagctatcagctgcgtccagtttgtgaccggc
tacatgattgttgagagccctgcctggttgggcatgcagaatagatccgaggagaagaag
accgtttcggagcgtatatggcgagctaatgccacccgtgctacaccctcaatggtcagc
gatgaaaacccgttgttggaggacgtagaagcccggcgccctgaaacttcaacaaacacg
acaaccgtgctacagttgttctttacgcccgagcttcgtaagccattgatgattacctgc
tttgccatgatgtcgcaacaaatatctggtgtaaacgcggtcctttattatagcaacgaa
atcttgtcaaaatccttgcccgatttggggccatatgtctcccttggtatcaccgttgtg
aatgtcataatgacttttccaccaattttcctaatagagcgtgtcggacgcaagtctctc
ctaggaatttctaccattggtgctctcgcctcacttgcttctatcggctttggcctcaac
aatgaccattccaccatgacaagcattgcaacgcttacatttattatgtcattcgcagtt
ggcctaggaccaattcctttcgtcttgatacctgaagctgtttctgccctgtcctcgatg
gcgctgtccttcaattgggtcaccaatttttttgttggcttagtcttcctaccactgcgg
agtttcctttccgacggtgatcctacgaaggagggacgcgtcttttacgtttttaggcgg
tcttcgtcctcttccctctatcttacctgctcaacgtcattcaaaacggcgaccggacct
ggaagtgctgcgcggcgttcggtgaccccctccaggtcgtcgtcccatatggacagcccg
ccgacaacaaatatccataccattgtcaaagctcaaattgtttttttactctcgacgctc
acggaggagaacttcgagaggaatcaacttgaaatacgctcgctttctgaacaacacggt
ctagaaacttacctgcacttcatacgtcgcctcatcgtacactcccaacaacggctcacc
tcagctacccctgcattcggagggacagacgctcttacttttcggcttctcgtctcagaa
tctcagcgtatcggtcgtgacccgatccttgctgaccgtttccgcgaaggaattgacaag
ggagacggggatatttttcggcattttgacctggtgcgatttgtggacagagtaggacta
cggccattggaacgtctcgttcttgcctctgcgttcgtttctacccccactcggaaagag
ctagcgaaccaagccgcgagcatcatccgtctggaatttgaaagcgccgttctctccatc
tgccatactgctcctttcgagaacgctgaccttagcctcaatagcctggcaaaggtcatg
gctaatgtcctttctgatcctccttctgatgctcctgtattggatgcgcaacaacgccaa
gctctgattcttgccgcccagacaaaatatggaaaggatgccatttctcccatacttcgc
cgtatcttcacccatctcagcctccctcctggtaccagccttgttcaagcgctcgtccag
cttggggcggatattacaagtgaccccgatcttgtgcgggcactcttagaattgtttgga
ttcacggagcaaaatcccccccgcgaaggtcaggtaatagatattgtttctactctagga
aggttggctgtggaaggctctccgctatgcgatgttggagcgctcactcgtactttagcg
agctttcacgtcaaacccagttggccgattgttatcaaatccttcgatcggccggatcgt
catggtgtagatacggcgactctgaagtttctgatttccattctgctcaatgcacctcga
gatgtggagccacatgcggtcactggtttctgggaaacatggaacaaccctctttatcag
ctgcgccttcttgacgctctcctttccctcccttccgatacattcagcttcgttagcctc
ccgggtcacagaatcgtaactgtcgatgatgtgactattgccagtcccaccatcagggct
cttgctgccaatgtccagagccacacgtggaattctcttgagctattccaagttctagtt
cgtctcgctggttccgattcagttgaaatacgtgcatgcgtccgcgaaatgctggataag
gccatcaagatcagtgcagagctagttcatatgggtttacttcaggttcctgatcctaag
tggaatgacattcggcttgaatattcacgcaaacttctctctatgtttctcgctggtcat
cctaatcatcaattagttttcatgcgaatctggcaaatcaatccgggttatctcactact
gcttttcgagaattctatgatgataacaacttgaatataacccggattctggatgtcgcg
caggatctcaaaattcttgaggctcttctggaggttcagccatttacatttgcccttgat
gttgctgctctagcttcgcgacgagaatatctgaaccttgaaaagtggttgcaggatcac
gttacccgatatgacggggaattccttcactcagttattgcgtttttggaggcaaagatg
gacagtgaaaaggcatgccgcctttcagaaacccccatggaaagcagaaccatgcctcta
aatgctcacgttgttacagtcatcttacgggttctgcggagcagcaccgaacacatgttt
gaaggcgacgtcgaagcttgtttagaagttcgcaacacctgtctacaaatccatccgcgg
cttatgaatctgatccctggaaacgaaaccgagccgggatttgctgtcatgagctatcct
gctgacattgaggctgaggtcgataacatctacaaacaaatgtatgacaccgcaacttcc
atcgacgacgttataaacatgctccggcgcttcaaggcctcaaaaaatccccgagatcac
gaacttttctcttgcatgcttcacttcctgttcgacgagtatagattttttcagtcggac
tatcccagccgcgaattggctctcactgcctacctttttggttcccttatccgtcaccag
ctgattgattacattccccttggcattgccatccgctatatcattgacgcactcggctgc
gctccgcacaccaatttgttcaaattcggtatgcaagccctgaatcagttcgagttccgg
ctggtagagtggagaccgttatgcgagaccttgcttcaaatacctcattttgtggaagct
cgacctgactttgcggccaacatccaacatatcctagctactggggggactaccgaccat
gtggacttgcagatgttgactctagcctcgtctaacgaacctgttcccgagccttctccc
gttttcatttccatcaaagctgataaaattgaagaagagatcattccgcctcctgaagaa
ctctctgacaaaatattgttcattgtcaacaaccttgctccaagcaatttcgatgcaaaa
attgaggagatgcgtgaacaattcgtggacgattattctcgttggtttgcacactatctc
gtagatcaacgcgtcagttcagaaccgaacaatcacactctatacctccgcttccttgat
tccctcaaccgtaaggacctctatcgttacgttcttcatgaaacttttgtaaaagctcaa
gcgatgctcaatgctgaacggactctccaatccggttctgatcgcggcacgctcaaaaac
gttggctcttggcttggaacaataactctggctcgagatcaacccatcaaacacaaaaac
ttgtcatttaaagatcttttgattgagggttacacgagtaatcgtctaatcgtcgccatc
cctttcgtttgtaaaactctggagccctgtgctcgatcaaaaatcttccgcccgcccaat
ccttggctgatggctgtcgtcagccttcttgccgagctctatcatcacgccgagctcaaa
ttaaatctcaaattcgaaattgaggttttgtgcaaagcgttggacatcaaccttgattcg
atcgaagcaaccagggtcattcgttctcgacctacggaaaatttcccagactacggcggg
gacctggcacccggtgttgtgggcgatggcctgatgcaagatggtgtgatgcttccgcct
caaaatgacaaccagcgcacgatcaacaatcacatcgagggcatactgtctgcgttatcc
cttcaagttcacatcgatccccagctaagtccattcaacgtcaaccaagcgttcaagcga
gcagtacaacttgctgtggatcaatccgttcgcgatatcattgtaccagtggtggaacgc
tctgtcactatcgctggaatctctactcgggaactagtaaccaaggactatgcaactgaa
ccgaatgaggaaaagctcaagaaagctggccatctcatggcgcagaagcttgctggaagt
ctggcactcgtcacttgcaaggagccaatgaggacaaatctgactacccaacttcgccag
ttcctgaacaaccagggattcactgagcaattggtaccagaacaagtcattcatgtgctt
atacgagataacttggagattgcatgcgcggctatcgagaaagtagcgatggagagggct
gttgcagatgtagaagacaactttgccgtttcaattgagagtcgaagacgacatcgggag
ctccgtaatccaggcccttactatgaccctaacacgcctcattctagcttcgctcttggt
cttccagaacctctccgtataaaatctggcggagtccagaatgttcaggctgccgtttat
gaagatttcgctgcccaacttaggcccaatgtcagtaggcccagctcagctaactcgtac
ccttacggcaatcagtctcccagccttgaacacgaagtatctgatgagagcatgcatggt
catcgggagatcatggaccggttccaggtcttcactcgtgatcttgaggcaattatgata
caacttccaatccagagtctaagcgctctaccgccaagccatgatgttcgccacttggtt
cgccagatcttatacctcgcagttgaggcttcggaccgcccacatacacccctcattatg
tctcaagcaattgtcaagaaattgtacaacacaccatctcaactcggacgggaagtttat
gttgccctcttggaacaattatgtcattcgttcgaagaggtggcgaaggaagctattgaa
tggttgttgtatgctaatgatgagcgtaaatatattgtaccggtcaccatcgctctgttg
aaaagccaactcatcaatattggcgttacggatcaacagcttgcgaagtctttatcttcg
gaccctcgccccagtctcctcacctacgctgccggcctgattcgcgaatgcctcaccacc
gatcccccggtggccagccaacatcagtttccttataccattgatgttcttgaccagata
tccaaggccggaaaagcaaatgaagatgtaaaccgtctgctggatgacctgcgcggtgta
cgacgcactcccgctgtggttgacgtcattcctcgtcaaccctctgcaaatgccgagacc
gaacaattacgcgacaaactctacatctggttccaacaatgggtcaacatcttccagcgt
tctcattcaccagagaaaagttttgtgccatttattacgcaattgactaagcaggggata
ctcaaagtcgaagacatgtcgtccctcttcttcagagtctgcgcagaggctagcgtcaac
agctatgtcaagtgcgttgcttcaaacgacttcgcttacgcctttcaagctctggatgcc
atgtcgcggcttattgtatacatcatcaagtaccacggcgacgcctctggagttaataat
gatcaagccaaggttcattacctgacaaagattttatctatctttgtactcgttttggcc
aacctccacgaggaacagggagctgcgttccaacagaaacctttcttcagattcttttcc
agccttgttaacgaccttcactctattgagaaccatctcgggcctgtctactttcatctg
ttggtcgctatcagtgatacgtacagctcccttcaacccatttacttccctggatttgct
ttctcctggatgtgtctcgtctcccacaggcttttcatgcctaagctattgatgtctgag
aatcgggagggctggtctgccttccacaaacttctggtttcccttttcaagttccttgct
ccattcctgaaagatgccgacctacaaaatgctgctaaagacctttatcgtggtagcctt
cgacttcttctggttcttcttcacgatttccccgatttcctgagtgaatattacttcacc
ttgtgcgacgtcattccccaacgctgcatccagctacggaacattattctcagcgctttc
cctccagctatcccccttcctgatcccaatctccgcaatcaaaagtttgattcaattccg
gaaatgggtccgattcccccaatcctctctgatttcagttctggtctcaagggcggtgaa
ttgagaacccatctggaacagtatctacttggccgcagttcagcttcctttcttctatcc
ctcaaggatcgtcttaagtcccaggcatccgaggatgcgacagaagcatataacctctca
ttgatcaactcgcttgtgatgttcattggtgtttcgtccgttgcccaagcgaaagctaga
agtggatcctccctctttgtcgcgagtgaccccggggttgttgccttacaatatctggta
acacagcttgatgatgaaggaaaacattgcctcttgagctcgatggctttacatctgcgt
taccctaacgctcatacccattggttcagttcactcatgcttcacttgttcctggaggtt
atggatgatcgcttccgagagatcatgaccaaagtcctccttgaacgtttcattgttcat
cgacctcacccttggggagctctagtcactttcatcgagctactacgcaacccgaagtat
gaattctggtctaaggaattcgttggcattgctcctgaagtgaccgtattgctcgatagt
gttgccgagtcaatttcccagcagtag
DBGET
integrated database retrieval system
