KEGG   Aristolochia californica: 137934646
Entry
137934646         CDS       T10486                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
acak  Aristolochia californica
Pathway
acak03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acak00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    137934646
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acak03019]
    137934646
Messenger RNA biogenesis [BR:acak03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     137934646
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_EML Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st DSE1_N WDR90_beta-prop_4th WD40_RFWD3 NBCH_WD40 Beta-prop_VPS8 Beta-prop_SCAP eIF2A Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Beta-prop_WDR11_1st Tricorn_2nd ASA1 Beta-prop_IFT140_1st CFAP43_N Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_WDR75_2nd DUF5711 PD40
Other DBs
NCBI-GeneID: 137934646
NCBI-ProteinID: XP_068635198
LinkDB
Position
Unknown
AA seq 321 aa
MKLAGLKYLENAHDESIWAVTWVPATDVRPALLLTGSLDETVRLWRPDELTPQGTNTGHC
LGVVSVAAHPSGVIAASASLDSFVRVFDVDTNATISTLEAPPSEVWNMQFDPKGTILAVA
GGGSASVKLWDTATWQLIATLVVPRPEVPKPSDKVGTGKFVLSVAWSPDGKRLACGCMDG
TISVFDVGRTKFLHHLEGHFMPVRSLVYSPVEPRLLFSASDDAHIHIYDAEGKTLIGAMS
GHASWVLSVDVSPDGAAVATGSSDRTVRLWDLSMRAAVQTMSNHTDQVWGVAFRPPGGTG
VRAGRLASVSDDKSVSLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagctagcagggttgaaatacttggagaatgctcatgatgagtcaatatgggcagtg
acatgggtacccgccaccgatgtccggccggcactgctgcttactggatcactcgatgag
acagtgcggctgtggcgccctgatgagcttactccacagggtaccaacacaggccactgt
ctcggtgttgtctccgttgctgcccatccctctggtgtgattgctgcttcagcttcttta
gacagctttgtccgtgtttttgatgtggacacaaatgccaccatctccactcttgaggcc
ccgccctcagaagtctggaatatgcaatttgatcccaagggaactattttggcagttgct
ggtggaggcagtgcctcggtcaagctatgggatactgccacttggcaactgatagcaact
ttggttgtaccacgtccagaagtccccaagccctctgacaaggttggcactggaaaattt
gttctttcagttgcatggagccctgatggaaaacggttagcttgtggatgcatggatggt
acaatttccgtcttcgatgtaggtcgtaccaagttccttcaccatctagaagggcatttc
atgccagtgagatcacttgtgtattctcccgtggagcctcgcctgcttttctcagcatcc
gatgatgctcatattcacatttacgatgcagaagggaagaccctcataggagccatgtct
ggccatgcaagctgggttctaagtgtggatgtcagtccagatggtgcagcagttgcaaca
ggatccagtgaccggactgtgcggctgtgggacctaagcatgagagctgctgtgcagaca
atgagtaaccacactgaccaggtctggggtgtagctttccgtcctccgggcgggacaggg
gtgcgtgctggacggctcgcaagtgtttctgatgataaaagcgtctctctgtatgattat
tcctaa

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