Aristolochia californica: 137947582
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Entry
137947582 CDS
T10486
Name
(GenBank) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137947582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137947582
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137947582
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137947582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
137947582
NCBI-ProteinID:
XP_068649485
LinkDB
All DBs
Position
Unknown
AA seq
2378 aa
AA seq
DB search
MGTLTFTLASQIQFLLQSLNDSNFDSIVRELTEIAELESEDSILLLQTLLDQVNIRDGDM
QLKLDLLSSIFRHLMGRPNFTTVFCVALRNTQMSEGFLTELSNAMNLTTPEKIGVGLALS
DSENLDFRMKGQNFCMTYIEELCANPAVMTSNEQIQNIFIFLSRSQGLAKYVDSFTKMLS
LLQLKEGTPCVLSPMIADDLFEVNSLRHLDLFFESKDNDFDVLLQEIEAEISMADIVKEL
GYGCTVDSSYCKQILSLFLPLNEVTLSRIISTVARTHAGLEDGQNTYPTFCSALGWGSTT
EPSWLNSWSVDVLANSIKQLAPETNWISVMENLDHEGFYLPDEGAFSLLMSIYKSVTEDP
FPLHAICGSVWKNAEGQLSFLRYAISAPPEIFTFAHSAMKLSYVDSLQGSELSNGQENQA
LLCLDLFEVLCQLAERGHANSVRAILENPLKQCPDILLFGLAHINTAFNLLQREVSSIVF
PMIFGNSMRGAILQNLWSVNPYLVVHGFVDIQSVDSDNLSKVLDICQELKILPSVLDMTP
FTFSIKLVALASKKDQINLEKWLNENLTTYKDSFFEGCVKFLKEISFYASNDGSTNSIQQ
SGAPISADAELTSTFFKVLQAYSGQLISHQLAEELKRLQITSAHVTPRLQSTGTAESITS
DGFPEDVEAEANSYFHQMFSGQLSIDAMVQMLSRFQDSPEKREQSIFECIIGNIFEEYRF
YPKYPEKQLRIAAVLFGSVIKHRLVGHLTLGMALRYVLDALRKSVDSKMFVFGAKALEQF
VDRLVEWPQYCNHILQISHLRGTHAELVAFIERALARISSGQSDSNGVHNGSTEQHQSPN
SQENMEVSDASWQTVGVGTVQSGQQFSHQLQLQQRHQGFLEEKQKPSATTVGYSKPPLSA
VSGSVGPAPSDLTNNQKTIQAVSSQSPPTGLAAVSPFPRPSRALPPAGVLRPHTSNTGFG
AALNIETLVAAAERRDTPIEAPSLEIQDKISFIINNISGTNMDAKAKEFNEILKEQYYPW
FAQYMVMKRASIEPNFHELYLKFLDKVNSKALNKEIVKTTYENCKVLLRSELIKSSSEER
SLLKNLGSWLGKFTIGRNQALRAREIDPKVLIIEAYEKGLMIAVIPFTSKILEPCQCSLA
YQPPNPWTMGILGLLAEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRVREIE
GNPDFSTKDATQPQMITEVDPPKDPPHTVYNPAPLPFPSSPVGDAKTGPGSIVNPVHGLP
QTTPNPLPFPQLPTSNLNIGTQVIINPKLNGRLQLPLQRIVSMAMERAVREIMTPVVDRS
VTIAMRTTKELVIKDYAIESDDSRIFNAAHLMVASLAGSLAHVTCKEPLRAAITNHLKSL
LQQLSVSADILEHAVQLVTNDNLDLGCALIEQAATEKALQSIDGEIAPQLMLRRKHRDGV
GSQYFDATTYAQGSFARVPEALRPKPGRLSIAQQRVYEDFVRIPWQNQPSQSSNPVQSGH
GNSNFYSSVQVAPGVVQPLDLPSEEEPGSTQLSTSPSHGGNADILQHGSDPNASLPSFSL
VVVPTEFPSMDSFGVGNDMATPVQLASAPSGERPGGAVSEQLLSTGDALDKYLIVAQKLE
ALITKDARDADIQGVIAEVPDILLRCVSRDEAALAVAQKVFKVLYENASNIIHVTSHLAI
LAAIRDVCKLVVKELTSWVIYSDEERKFNKDITIGLIRTELLNLAEYNVHLAKLIDGGRN
KAATDFAISLLRTLVFQETGVSVSEFYSLVDTLEKLASRPGAPESLQQLVEIARNSHPRF
PVGKDDKARLSRDKKLPTGRSVSSKDDYSMTEPSTADPAGFREQVTLLFREWYRICELPG
AIDASCSHYISQLQQSGLLKGDDITDRFFRILMDLSVGHCLASEGINPNPLSLQNPQQGQ
NLSFIAIDMFTKLVVLVLKFWAVDQGSSKLVLLPKILAVVVRVIQKDAEEKKASFNPRPY
FRFFLNCLLDLGSHDLAFEGATFQILTAFANAFHALQPLRVPGFSFAWLELVSHRSFMPK
LLTSPSQKGWSYVQRLLVDLFKFMEPYLRNAELGDAVQFLYRGTLRVLLVLLHDFPEFLC
DYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQSPHILSEVDAA
LKAKQMKADIDEYLKTKQGPILPSELKQKLLLPQIEVALAGTRYNVPLINSLVLYVGMQA
IQQLQSKSAQQMHTGPMDIFLAGAAMEIFQALIRDLDTEGRYLFLNAVANQLRYPNNHTH
YFSFVLLYLFAEAKQVELSQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYDF
WSKSFTRCAPEIEKLFESVSRSCGGAKAVDDGMVSGGI
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccttgactttcactttagcgagccaaattcagttcttgcttcagagtttgaat
gactctaacttcgactcgattgttcgcgagctaactgagattgctgaattagaaagtgag
gacagcattttattgcttcagaccctgttagatcaggtgaatattcgtgatggggatatg
cagttaaagctagatctcctttcatcaatctttaggcacttgatgggaagaccaaacttc
acaacagtattctgtgtagcactgagaaatacccaaatgagtgaaggttttctgacggag
ctttcaaatgccatgaatctgacaacccctgagaagataggggttggacttgctttgtca
gactctgaaaatttggatttcaggatgaaaggacaaaatttctgcatgacctatattgag
gagttgtgtgcaaatcctgctgtcatgacttcaaatgagcaaatacaaaatatatttatc
tttctctctaggtctcaaggccttgccaagtatgtggattcttttacaaaaatgttgtcc
ttactacagctgaaggagggaactccttgtgtattatcccccatgattgccgatgattta
tttgaagtcaactctctgaggcatttggacttattctttgaatcaaaggacaatgatttt
gatgtccttttgcaagagatagaggcagaaataagcatggcagatattgtgaaggagcta
ggctatggatgtacagttgattcttcatattgtaaacaaatattatctcttttcttgcct
cttaatgaagttactctttcgaggattattagcacagttgcacggactcatgctggtctg
gaggatggtcaaaatacataccccacattttgctctgctcttggatggggctcaactacc
gagccatcatggttgaactcatggagtgtcgatgttcttgctaattcaattaaacaactt
gctcctgaaactaattggatatctgttatggagaatctggatcacgagggattttacctt
cctgatgaaggggccttttctcttttaatgtccatctacaaaagtgtaactgaggatcca
tttcccctacatgccatctgtgggtctgtgtggaagaatgctgaagggcagttatctttc
ctaagatatgccatatctgcacctcctgagatatttacatttgctcattctgcaatgaaa
ttgtcatatgttgactcactgcagggatccgaactttcaaatggacaggaaaatcaagca
ttgttatgccttgacctgtttgaggtattatgtcaattagctgagagaggtcatgccaac
tctgtccgagctattcttgagaatccccttaagcagtgtcctgatatattgctttttggt
ctggctcatattaatactgcatttaacctccttcaacgtgaagtatcctctatagttttt
cctatgatatttgggaattctatgagaggtgctattcttcagaatctatggagtgttaat
ccatatcttgttgtacacggttttgttgacatacagagtgtcgactcagataacttgagt
aaggttctggatatttgccaggagctgaagatcctcccttctgtattggatatgactcca
tttacatttagtattaagttggtcgcccttgcttctaagaaggaccaaattaatcttgaa
aaatggttaaatgagaatctgaccacttataaagattctttctttgagggttgtgtcaaa
ttcttgaaagaaatatccttctatgcttcaaatgatgggtccactaattctatccagcag
tctggtgctccaataagtgctgatgctgaactaacgtctacttttttcaaggtccttcaa
gcttattcagggcaacttatttcccaccaactagctgaggaattgaaaaggttacagata
acttctgcacatgtgactccaagactacaaagtacagggacagcagaatcaattacatct
gatggatttccagaagatgttgaggcggaagccaactcttattttcatcaaatgttctct
ggacagctatccattgatgccatggttcaaatgctttcacgattccaagattctcctgaa
aagagggagcagtcaatctttgaatgtataataggaaatatatttgaggagtacaggttc
tatcccaagtacccagaaaagcagctcagaattgcagctgtactctttggttctgtaatt
aagcatcggcttgtaggtcatcttacacttggcatggcactgcgttatgttttggatgct
ttaaggaaatctgttgattcaaagatgtttgtttttggggccaaagcgttagagcagttc
gtggatcgtttggttgagtggccccagtactgtaatcatattctacaaatatctcacttg
cgtggcacacatgctgagctggtcgctttcattgagagagcacttgcacggatttcctca
ggtcagtcagattcgaatggtgtgcataatggctctactgagcagcaccaaagtcccaat
tcccaggaaaacatggaggtatctgatgcctcatggcagacagtaggtgtgggcactgtg
cagtctgggcagcaattttcacatcaactgcagctgcaacaaaggcatcagggctttctg
gaagagaaacaaaaaccatctgcaactactgtaggctactcgaagcctcctctttctgct
gtatcaggttcagttggtccagcacctagtgatctcactaataatcaaaagacaatccaa
gcagtgtcttctcaaagtccacctacaggtcttgctgctgtttcgcctttccctcgtcct
tctcgagcattgccacctgcaggggtgcttcgtccccacacttctaacactggctttgga
gctgctttgaacattgaaaccctagtagcagctgctgaaagaagagatacacctattgag
gcgccatctttagagattcaggacaagatatcgttcatcattaataatatttcaggcacc
aacatggatgcaaaggcaaaagaatttaatgagatcctgaaggagcagtattatccatgg
tttgctcaatatatggttatgaagagagcaagtattgagccaaatttccatgagttgtat
ttgaagttccttgataaagttaactcaaaggctttaaataaggagattgtgaaaacaact
tatgagaattgcaaggttctcttgaggtctgagcttataaaatcaagctcagaagagcga
tccttgcttaaaaatcttggtagttggcttgggaaattcaccattggccggaatcaagca
ttgagggctcgagaaatcgatcctaaagtgttaataatagaggcatacgaaaaggggtta
atgattgcagtaataccattcacttcaaagattttggagccatgtcaatgcagtctggct
tatcagcctccaaatccttggaccatggggattcttggtttacttgctgagatatatgca
cttcctaatttgaaaatgaatctgaaatttgacattgaagtgctttttaagaacctgggt
gtagatatgaaagatgtaaaaccaacttctcttcttaaagatcgtgtgagggagatcgaa
ggaaatccagacttttctactaaagatgcaacacaaccacaaatgataactgaagttgac
cctccaaaagatccacctcacactgtttacaatccagctcctcttccctttccttcgagt
ccagtgggggatgcaaagactggacctggaagcattgttaatcctgttcatggacttcca
caaaccactccaaacccattgccttttccccagcttccaacatcaaatcttaacattgga
acccaagttattatcaatccaaaacttaatggccgtttgcagttgccattgcagaggatt
gtttcaatggccatggaaagggctgtcagagagataatgactccggtcgttgatcgtagt
gtaactatagcaatgaggacaacaaaggaacttgtcataaaggattatgcaattgagtct
gatgacagtcgtatatttaatgctgcacacttaatggttgcaagtcttgctggaagttta
gctcatgtgacatgcaaggaacctcttcgtgctgctataacaaaccacttgaagagtttg
cttcaacaattaagtgtcagtgcagatattctggaacatgcagtacagcttgttacaaat
gacaatcttgatctgggttgtgcacttattgaacaggctgccactgagaaggcactacaa
tcaattgatggagaaatagcaccgcagcttatgcttcggaggaagcacagagatggtgtt
gggtctcaatactttgatgccacgacttatgcacagggctcatttgcccgtgtacctgag
gcacttcgtcccaagcctggtcgcttgtccattgctcagcagcgtgtttatgaggatttt
gtgaggattccatggcaaaaccagccgagtcaaagttcaaatcctgtgcaatctgggcat
ggaaactcgaatttctattcttctgtacaagtggccccaggggttgtacaaccattagat
ctcccgtctgaagaagagcctggttcaacacaactcagtacatctccaagtcatggtggg
aatgcagatattctgcagcatggatctgatcctaatgcttctctcccttcgttctcttta
gttgtagttcctactgaattcccctcaatggattcctttggtgtaggaaatgatatggca
acacctgtgcaactggcgtctgcgccttctggagaacgccctggtggtgctgtatcagaa
caattactatccacaggagatgcattggataagtacctgatcgttgctcagaagcttgag
gccttgattaccaaggatgctagggatgctgatattcagggtgtgattgctgaagtgcct
gacattctgcttagatgtgtaagcagagatgaagctgccttggctgttgcacaaaaggtt
ttcaaggttttatatgagaacgcttcaaacattattcatgttacttcccaccttgctatt
ttggctgcaattcgggatgtttgcaagcttgttgtcaaggaattgactagttgggtcatc
tactcagatgaagagcggaaattcaacaaagatatcacgattggcctcatccgtaccgag
ttgttaaaccttgctgagtataatgtgcatttggccaaactcattgatggcgggaggaat
aaagctgctacagactttgccatttctcttttgcgcaccctggtctttcaggaaactggt
gttagtgtctcagagttttatagtcttgttgatactttggagaagcttgcttcgaggcct
ggagctcctgaatccctacaacagttagttgagattgctcgcaattctcatcctcgcttt
cccgttggcaaggatgataaagctagactgtctagggacaagaagctgcctactggccgc
tctgtatcaagtaaggatgattatagcatgactgaaccttcaacagctgaccctgctgga
ttccgtgaacaggttactctgctctttagggaatggtaccggatatgtgagcttcctggg
gcaattgatgcatcttgttcccattacatttcacaactgcagcaaagtgggttgcttaag
ggagatgatattaccgataggttcttccgaatcctcatggacctctccgtgggacattgc
cttgcctctgaggggattaatccaaacccgctgtctctgcagaatcctcagcaaggccaa
aatctctcttttatagccatcgatatgttcacaaagcttgttgttctagttttgaagttt
tgggcggtggaccagggttcaagcaagctagtgcttctgcctaagatcttggctgttgta
gtacgagtcattcagaaggatgctgaagagaagaaggcttctttcaatccaagaccatac
ttcaggttttttttgaactgtctcttggatctgggctcccatgatcttgcatttgaagga
gcaacctttcagattctgacggcatttgcaaatgctttccatgctctgcaaccattgaga
gttcctggttttagctttgcatggctggagttggttagccacaggagttttatgcctaaa
ttgcttacaagtccatctcagaagggttggtcttacgtccaacgtctgcttgtggatttg
ttcaaatttatggaaccgtacttaagaaatgcagaactaggagatgcggtacaattcttg
tacagaggaaccctgagagttctgctagtattacttcatgacttccccgagttcctctgt
gattatcatttcagtttctgcgatgttattccacccagttgcattcaaatgcgaaatgtt
atcctaagtgcctttccacgcaacatgaggctgcctgatccttcaacccctaacttaaag
attgatttgctggcagaaatcagccaatcaccacacattctctctgaggtagatgctgct
ctgaaagccaagcagatgaaggctgatattgacgagtatctcaagacaaagcaggggcct
attcttccttctgagctgaagcagaaactgctgctgccccaaattgaggtggcacttgca
ggaacacggtacaatgtaccactaatcaattcgcttgtgctttatgtgggcatgcaggca
atccaacagttacagagcaagtctgcacagcagatgcatacaggccctatggatattttc
ttggcaggtgcagctatggaaatttttcaggctctcatcagggacctggatacagaagga
cgttatctcttcctcaatgcagttgcaaatcaattacgatatccaaacaatcacacccac
tatttctcctttgtcttgctgtacctgtttgctgaagctaagcaggttgaactttctcag
gagatcatccaagaacaaataacaagggtgttgttggaacgcttgattgttaaccggcca
catccatggggtctactgatcacgttcattgagctcatcaagaatcctcgatatgatttc
tggagtaagagcttcactcgttgtgctcctgagattgaaaaattattcgagtccgtgtct
agatcctgtggaggagcaaaagctgtggatgacgggatggtatccggtggaatctga
DBGET
integrated database retrieval system
