Aristolochia californica: 137967063
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Entry
137967063 CDS
T10486
Name
(GenBank) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acak Aristolochia californica
Pathway
acak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137967063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acak03019
]
137967063
Messenger RNA biogenesis [BR:
acak03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137967063
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137967063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
137967063
NCBI-ProteinID:
XP_068669587
LinkDB
All DBs
Position
Unknown
AA seq
2405 aa
AA seq
DB search
MGTLPLTLASQIRFLLQSLNDYNFDSVVRELTEIADLESEDSILLLQTLLDQVNFRDGNM
QLKLDLLSAIFRHLMGRPNFTTVFCVALRNTQISEDFLSDLSNAMNLTTPEKIGVGLAFS
DSENLDVRVKGQNFCMTCIEELCANPAVMTSNEQIQNIFIFLSRSQGLAKYVDSFTKMLS
LQQLKEGTPCVLSPMLPNDLFEVNSLRHLDLFFELKDEDFDVLLQEIEAEISMADIVKEL
GYGCTVNSSQCKQILSLFLPLNEVILSRIVSTIVRTHAGLEDGQNTYSTFCSALGWGSST
ESSWLNSWSVDVLADSIKELAPETNWISVMENLDHEGFYLPDEGAFSVLMSIYKSVTQDP
FPLHAICGSVWKNAEGQLSFLRYAISAPPEIFTFAHSARKLSYVDLQQGSKLPNGHENQA
WLCLDLIEVLCQLAERGHANSVRAILENPLKQCPDLLLIGLAHINTAFNLLQNEVSSIVF
PMIIGNSMRGAILQNLWSVNPYLVVHGFVDIQSVDSDNLSKVLDICLELKILPSVLDMTP
FTFSIKLVVLASKKDQINLEKWLNENLTAYKDSFFEGCVKFLKEISFYTSNDGSANSIQQ
SGALINTYAELTPTLFKVLQAYSGQLISQQLAEELKRLQITHVAPRLQSSGTADSTTSDG
FPDDVEAEANSYFHQMFSGQLSIDAMVQMLSRFQDSPEKREQAIFECIIGNIFEEYRFYP
KYPEKQLRIAAVLFGSVIKHKLVGHLTLGMALRYVLDALRKSVDSKMFVFGAKALEQFVD
RLVEWPQYCNHILQISHLRGTHAELVAFIERALARISSGQLDSNGVHNGPSEQHQGPNSQ
ENMEVSDASWQTIGVGTVQSGQQFSHQLQLQQRHQGFLDEKQKPSTSTVGYSKPPLSAVP
GSVGSAPSDLTNNQKSISSQSFPPVSSQSLPSVPAPVPSPSSFRPSRALPPTGVLRPHTS
NTGFGAALNIETLVAAAERRDTQIEAPSLEVQDKISFIINNISGTNMEAKTKEFNEILKE
QYYPWFAQYMVMKRASIEPNFHELYLKFLDKFSSKDLNKEIVKATYENCKVLLRSDLIKS
SSEERSLLKNLGSWLGKFTIGRNQPLRAREIDPKVLIIEAYEKGLMIAVIPFTSKILEPC
QCSLAYQPPNPWTMGILGLLAEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDR
VREMEGNPDFSTKDATQPQMITEVDPQKDPSYPYNPAPLPFPSSSVGDAKTGPGSIVNPV
HGLPQPTPPPLPFPVPQLPTPILNIGTQVIINSKLNGHMQLPLQRIVSMAMERAIREIMS
PVVDRSVTIAMRTTKELVIKDYAMESDESRIFNAAHLMVASLAGSLAHVTCKEPLRAALT
NHLKSMFQALSVSADIVAEAVPIITNDNLDLGCAVIEQAATEKALQSIDGEIAPQLMLRR
KHRDGVGSQYFDATTYSQGPFARVPEALRPKPGRLSIAQQRVYEDFVRIPWQNQPSQSSN
AVQSGMLVSSGGSVNSGLSRANVSISGHGNSNFYSSVQVAPGFVQPLDLSSEEDPGSTQV
LSTSPRHVGNADVLQQHVTSDSNSSAPSFPPAVVPTEPHPIDSFGAVKEAGTPVQPSPAP
SGERLGGALLEQLLSTGEALDKYQTVAQKLEALITTKDARDADIQGVIAEVPDILLRCVS
RDEAALAVAQKVFKSLYENASNNMHVTSHLAILAAIRDVCKLVVKELTSWIIYSDEERKF
NKDITISLIRTELLNLAEYNVHLAKLIDGGRNKAATDFAISLLSTLVYQETGVSVSEFYS
LVDTLEKLALRPGAPETLQQLVEFARNSAASQVSHPRFVIGKDDKARLPRDKKLPTSRPL
PSRDDYGMTEPSTADPAGFREQVALLYREWYRISELPGAIDAACSHYISQLQQSGLLKGD
DITDRFFRILMDLSVGHCLASEGINPNLLSLQTPQQGQHLSFIAIDMFTKLVVLVLKGPS
KLVLLPKILAVVVRVIQKDAEEKKASFNPRPYFRFLVNCLLDLGSPDPALEGATLQILMA
FANAFHALQPLRVPGFSFAWLELVSHRSFMPRLLTSPSQKGWSFVQRLLVDLFKFMEPYL
RNAELGDVVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRN
MRLPDPSTPNLKIDLLAEISLSPHILSEVDAALKAKQMKADIDEYLKTKQGPILPSELKQ
KLLLPQNEVALAGTRYNVPLINSLVLYVGMQAIQQLQSKSAQQMHTGPMDIFLAGAAMEI
FQALIRDLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEAKQEIIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPRYDFWSKSFTRCAPEIEKLFESVSRSCGGAKAVDDGM
VSGGI
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgggaactttgcctctcaccttagcgagccaaattcgattcttgcttcagagcttgaac
gattataacttcgactcggttgttcgcgagttaactgagattgctgatctagaaagcgag
gacagcattttactgcttcagaccttgttagatcaggtgaactttcgtgatgggaacatg
caattaaagctagatctcctttcagcaatctttaggcacttgatgggaagaccaaatttc
acaacagtattttgtgtagcactcagaaacactcaaattagtgaagattttctatcggat
ctttccaatgcaatgaatttgacaacccctgagaagataggggttggacttgctttttca
gactctgaaaatttggatgtcagggtgaaaggacaaaatttctgcatgacctgtatcgag
gagttgtgtgcaaatcctgctgtcatgacttcaaatgagcaaatacagaatatttttatt
tttctctctcggtctcaaggccttgccaagtatgtggattcttttacaaaaatgttgtcc
ttacaacagctgaaggagggaactccttgtgtattatcccccatgcttcccaatgatttg
tttgaagttaactctctgaggcatttggatttattctttgaattgaaggacgaagatttt
gatgtccttttgcaagagatagaagcagaaataagcatggcagatattgtgaaggagcta
ggctatggatgtacagttaattcttcacaatgtaaacaaatattatctcttttcttgcct
cttaatgaagttattctttcgaggatcgttagcacaattgtacggactcatgctggtctt
gaggatggtcaaaatacatactccacattttgctctgctcttggatggggttcatctact
gagtcatcatggttgaactcgtggagtgttgatgttctcgctgattcaattaaagaactt
gctcctgaaactaattggatatcagttatggaaaacctggatcatgagggattttacctt
cccgatgaaggggccttttctgttttaatgtccatctacaaaagtgtaactcaggatcca
tttcccttacatgccatctgtgggtcggtttggaagaatgctgaagggcagttatctttc
ctaagatatgccatatctgcacctcctgagatatttacatttgctcattctgcaaggaag
ttgtcatatgttgacttgcagcagggatccaaacttccaaatgggcatgaaaatcaagca
tggctatgccttgacctgattgaggtattatgtcaattagctgagagaggtcacgccaac
tctgtccgagctattcttgagaatcccctgaagcagtgccctgatttactgcttattggt
ctggctcatattaatactgcatttaacctcctccagaacgaagtatcttctatagttttt
cctatgataattgggaattctatgagaggtgctattcttcagaatttgtggagtgttaat
ccctatcttgttgtacacggttttgttgacatacagagtgttgactcagacaacttgagt
aaggttctggatatttgcctggagctgaagattcttccctctgtattggatatgactcca
tttacgtttagtatcaaattggtggtccttgcttctaagaaggaccaaattaatcttgaa
aaatggttaaatgagaatctgacagcttacaaggattctttctttgagggttgtgtcaaa
ttcttgaaagaaatatccttctatacttcaaatgatgggtctgctaattctatccagcag
tctggtgctctgataaatacttatgccgaactaacgcctactttattcaaggtccttcaa
gcttattcagggcaacttatttctcagcaactagccgaggaattgaaaaggttacagata
acacatgtagctccaagactgcaaagttctgggactgcagactcaactacatctgatgga
tttccagatgatgttgaggctgaagcaaactcttactttcatcaaatgttctctggacag
ctatccattgatgccatggttcaaatgctttcacgattccaagattctcctgaaaagagg
gaacaggcaatctttgaatgtataataggaaatatatttgaggagtacagattctatccc
aagtatccagaaaagcagctcagaattgcagctgtgctctttggttctgtaataaagcat
aaacttgtaggtcatcttacacttggcatggcactgcgatatgtcttggatgcattgagg
aaatctgttgattcaaagatgtttgtgtttggggccaaagctttagagcagtttgtggat
cgtttggtcgagtggccccagtattgtaatcatattctacaaatatctcatttgcgtggc
acacatgctgagctggttgctttcattgagcgagcacttgcacggatttcctcagggcag
ttggactccaatggtgtgcataatggtcctagtgagcaacaccaaggtcctaattcccag
gaaaacatggaggtatctgatgcctcatggcagacaataggtgtgggcactgtgcagtct
gggcagcaattttcacatcaactgcagctgcaacaaaggcatcagggttttctggatgag
aaacaaaaaccatccacaagtactgtaggctactcgaagcctcctctgtctgctgtaccg
ggttcagttggttccgcacctagtgatctcactaataatcaaaagtcaatctcttctcaa
tccttcccaccggtgtcttctcaaagtctaccttcagttccagctcctgttccttctccg
tcgagttttcgtccttctcgagcattgccacctacaggggtgcttcgtccccacacgtct
aacactggttttggagctgctttgaacattgagaccctagtagcagctgctgaaagaagg
gatacacagattgaggctccatctttagaggttcaggacaaaatatcgttcatcataaat
aatatttcaggcacaaacatggaggcaaagacaaaagaatttaatgagatcctaaaggag
cagtattatccatggtttgctcaatatatggtgatgaagagagcaagtattgaaccaaat
ttccatgagttgtatttgaagttccttgataaatttagctcaaaggatttaaataaggag
attgtgaaagcaacttatgagaattgcaaggttcttttgaggtctgaccttataaaatca
agctcggaagagcgatccttgcttaaaaatcttggtagttggcttggtaaattcaccatt
ggcaggaatcaaccattgagggccagggaaattgatcctaaagtgttaataatagaggca
tatgaaaaggggttaatgattgcagttattccattcacttcgaagattttggagccatgc
caatgcagtctggcttatcagcctccaaatccttggaccatgggaattcttggcttactt
gctgagatatatgcactgccgaatttgaaaatgaacctgaaatttgacattgaagtgctt
tttaagaacctgggtgtagatatgaaagatgtaaaacctacttctcttctcaaagatcgt
gtgagggagatggaaggaaatccagacttttctactaaagatgcaacacaaccacaaatg
ataactgaagttgaccctcaaaaagatccatcctacccttacaatcctgctcctcttcct
tttccttcaagttcagtgggggatgcaaagactggacctgggagcattgttaatcctgtt
catggacttccacaacccactccacccccattgccatttcctgttccccagcttccgaca
ccaatcctcaacattggaacccaagttattatcaattcaaaacttaatgggcatatgcag
ttgccactgcagaggattgtttcaatggccatggaaagagctataagagagataatgtct
ccagttgttgatcgtagtgtaacaatagcaatgcggacaacaaaggaacttgtcataaag
gattatgcaatggagtctgatgaaagtcgtatatttaatgctgcacacttaatggtggca
agtcttgctggaagtttagctcatgtgacatgcaaggaacctcttcgtgctgctttaaca
aaccacttgaagagtatgtttcaggcattaagtgtcagtgcagatattgtggcagaagct
gtaccgattattacaaatgataatcttgatctaggttgtgcagttattgaacaggctgcc
actgagaaggcactacaatcaattgatggagaaatagcgccacagcttatgcttcggagg
aagcacagagatggtgttggttctcaatactttgatgcaacaacttattcgcaaggcccc
tttgcccgtgtacccgaggcacttcgtcccaagcctggtcgcttgtccattgctcaacag
cgtgtttatgaggattttgtgaggattccatggcaaaaccagccaagccaaagttcaaat
gctgtgcagtctggtatgcttgtatcatctggtggatctgtcaattctggattgtcacgt
gccaatgtttcaatttcagggcatggaaattcgaatttctattcttctgtacaagtggct
ccggggtttgtacaaccattagatctctcgtctgaagaggatcctggttcaacacaagtt
ctcagtacgtctccaagacatgttgggaatgcagatgttctgcagcagcatgtaacttct
gacagtaattcttctgccccttcattccctccagctgtagttcctacagaaccccaccca
attgattcctttggtgcagtaaaagaggcaggaacacccgtgcaaccttcacctgcacct
tctggagaacgccttggtggtgctttattagaacaattactatctacaggagaagcattg
gataagtaccagactgttgctcagaagctggaggctttgattaccaccaaggatgctaga
gatgctgatattcagggtgtcattgctgaagtgcctgacattctgcttagatgtgtaagc
agagatgaagctgcattggctgtggcacagaaggttttcaagagtttatatgaaaatgct
tcaaacaacatgcatgttacttctcaccttgctatactggcggccattcgagatgtttgc
aagcttgttgttaaagaattgacgagttggatcatctactcggatgaagagcggaaattc
aataaagatatcacgatcagcctcatccgtactgagttgttaaaccttgctgagtataac
gtgcatttggccaaactcattgatggcgggaggaataaagctgctacagactttgccatt
tctctcttgagcactctggtctatcaggaaactggtgttagtgtctcagagttttatagt
cttgtcgatactttggagaagcttgctttgaggcctggagctccagaaactctccaacag
ttagttgagtttgctcggaattcagctgccagccaagtttctcatcctcgctttgtcatt
ggcaaggatgataaagctagattgcctagggacaagaagctgcctaccagccgtcctctg
ccaagtagggatgattatggcatgactgagccttcaacagctgaccctgctggattccgt
gagcaggttgctctgctttatagggaatggtaccgaatatccgagcttcctggggcaatt
gatgcagcttgttcccattacatttcacaactgcagcaaagtgggttgcttaagggagat
gatattactgatcggttctttcgaatcctcatggacctttctgtgggacattgccttgca
tccgaggggatcaatccaaacctgttgtctctgcaaactcctcagcaagggcagcatctc
tctttcatagctattgatatgttcacaaagcttgttgttctagttttaaagggaccaagc
aagcttgtacttctgcctaagatcttggctgttgttgtacgagtcattcagaaggatgct
gaagagaagaaggcttctttcaatccaagaccatatttcaggtttttggtgaactgtctc
ttggatcttggctcccctgatcctgcattggaaggagcaaccctgcagatactaatggca
tttgcaaatgctttccatgcactgcaaccattgagagttcctggttttagctttgcatgg
ctggagttggttagccaccggagttttatgccaagattgcttacaagtccatctcagaag
ggttggtcttttgtccaacgtctacttgtggatttgttcaaatttatggaaccctacttg
agaaatgcagaactgggagatgtggtacaattcttgtacaaaggaaccctgagagtgctg
cttgtattgcttcacgatttcccggagttcctctgtgattatcatttcagtttctgtgat
gttattccacccagttgcattcaaatgcgaaatgttattctcagcgcatttccacgcaac
atgaggctgcctgatccttcaactcctaacttaaagattgatttactggctgaaatcagc
ctatcaccacacattctttctgaggttgatgctgctctgaaagcgaagcagatgaaggct
gatattgatgagtatctcaagacaaagcagggacctatacttccttctgagctgaagcag
aaattgctgctgccccaaaacgaggtggcacttgcaggaactcggtacaatgtaccactg
atcaattcgcttgtgctttatgtgggcatgcaggcaatccaacagttacagagcaagtct
gcacaacagatgcatacaggccctatggatattttcttggcaggtgcagctatggagatt
tttcaggctctcatcagggacctggacacggaaggacgctatctttttctcaatgcagtt
gcaaatcaattacgatatccaaacaatcacacccactatttctcctttgtcttgctgtac
ctgtttgctgaagccaagcaggagatcatccaagaacaaataacaagggtgttgttggaa
cgcttgattgttaaccggccacatccatggggtctacttattacgttcattgaactcatt
aagaatcctcgatatgatttctggagtaagagcttcactcgttgtgctcctgagattgaa
aaactatttgagtctgtatctagatcttgtgggggagcaaaagctgtcgatgacgggatg
gtatcgggtggaatctga
DBGET
integrated database retrieval system
