KEGG   Acanthamoeba castellanii: ACA1_260060
Entry
ACA1_260060       CDS       T02667                                 
Name
(RefSeq) sec13like protein
  KO
K14299  nucleoporin SEH1
Organism
acan  Acanthamoeba castellanii
Pathway
acan03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    ACA1_260060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_260060
   04131 Membrane trafficking [BR:acan04131]
    ACA1_260060
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     ACA1_260060
Membrane trafficking [BR:acan04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    ACA1_260060
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_C Beta-prop_WDR41 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_EML WD40_Gbeta Beta-prop_SCAP WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd DSE1_N EIF3I WDR55 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_DCAF12 Beta-prop_HPS5 ASA1 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F IMP2_N WD40_MABP1-WDR62_1st
Other DBs
NCBI-GeneID: 14912051
NCBI-ProteinID: XP_004333655
UniProt: L8GF95
LinkDB
Position
Unknown
AA seq 201 aa
MGLKLATCSADGFIRIYEAMDIMNLNHWSLTAEFESHKGGSNCISWNSSAFDKPSMAVGS
AGDQEVKVWEYNEQQGRWKVAYALSGHAEEVHDVAWAPNLGRTYNLIATGSKDKTVRIWR
LPTARSPTQFAPYEEAALKEHKDAVWRVQWNVTGTILASSGDDGNVCLWKANFKGQWQLL
SMVGGDDDDAEPTFISAKQDD
NT seq 606 nt   +upstreamnt  +downstreamnt
atgggcctcaagcttgccacctgctctgctgacggcttcatccgaatctacgaggccatg
gacatcatgaacctcaaccactggtcgctcaccgccgaattcgaatctcacaagggaggg
agcaactgcatcagctggaactcctccgcctttgacaagccttcgatggcggtgggcagc
gcgggcgaccaggaggtgaaggtctgggagtacaacgagcagcagggcaggtggaaggtc
gcctacgccctcagtggccacgccgaagaggtgcacgacgtcgcctgggcgcccaatctc
gggcgaacctacaatctgatcgcgaccggatcgaaggacaagacggtccgcatctggcgc
ttgcccaccgctcgctctcccactcagtttgcaccctacgaggaggcggccctgaaggag
cacaaggacgccgtgtggcgggtgcaatggaacgtgacgggcacaattttggcttcctcg
ggagacgacgggaacgtgtgcctgtggaaggcaaacttcaagggccagtggcagctcctc
tccatggtcggcggagacgacgacgatgccgaacccacgttcatctctgccaagcaggac
gactaa

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