Antrostomus carolinensis (chuck-will's-widow): 104527147
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Entry
104527147 CDS
T08541
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104527147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acar03019
]
104527147
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104527147
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104527147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104527147
NCBI-ProteinID:
XP_010169086
LinkDB
All DBs
Position
Unknown
AA seq
1887 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQXXXXXXXXXXVLESSVRSVVFRPPNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKKD
VKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIPL
FQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAH
HMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG
GVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQH
LQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLL
RYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRHHLVNMQQY
DLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNA
PEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHSAAAGRDSTKAFSAFVGQVELLERK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggattgccaaaaccatgatggagagttctctggcagattttatgcaa
gaagttggctatggcttttgtacaagtgtcgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaggtcacggctgcccaggttgccagggttttggggatgatggctcggact
cattcggggttgacggatggcattccattacaatctatttcggctcctggcagtgggatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagtctggacttcaaagtagtaacctatgaa
ttggaccacccgggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
cacgcagagggccagctctctttcattcaacattcccttataaaccctgacatcttctgt
tttgctgactacccttgtcacactgttgccatagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtaggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttattgcagatcaacacatcctggcataccttacgccat
gaactcatctccacgctcatgccaattttcctgggcaaccaccccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagctaatcatgcat
gcgatggcagaatggtacatgagaggggagcaatatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttatcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatccatcttgggtggtcttgctccagaaaaagatcaacccaaaagt
gctcaacttcctccagaaacgttggcaactatgttggcgtgtcttcaagcttgtgctggg
agtgtttctcaggagctgtcagagactatcctcaccatggtagctaactgcagtaatgtc
atgaacaaggctagacagccaccccccggagtcatgccaaaaggacgcccacccagcgct
agcagcttggatgccatctctcccgtacagatcgactcgctggcaggaatggcatctctt
agtttaggtggctcggctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcgtttccccctctttccacccaa
aaccagacgacaggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaaccggagccctgggccttcctgcggtgaac
aatgatccattcgtgcaaaggaagctgagcacatctggactgaatcagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccacccacca
catcccaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctcttcggtgggatc
atagagaaaggactggttacttacatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatcgaaaatgtactattttggtatcgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtatatagaatacggacagcaatcccgagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagcattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactattgtc
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgacacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaagagagtcagt
attgagcctaattttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccatcttgcacacggatttggatgtgaaatcactg
ctactggaagcatacgttaagggacagncnnnnnnnnnnnnnnnnnnnnnnnnnnnngtc
ttagaatccagtgtgaggagcgtggtcttcaggcctccaaacccatggacaatggccatt
atgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaagtttgag
attgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctggaagtctc
ctgaaagataaggatcgtctgaaaaatctggatgagcagctctctgctccaaagaaggat
gtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaactccagcg
accagcaccacttgtacagccacggttcctccacagccccagtacagttaccacgatatc
aatgtctactctttaggagggttggctccgcatattactttaaatccaacaatcccgctg
tttcaagcccacccgcagttgaagcagtgcgtgcggcaggcgatcgagcgagcagtgcaa
gagctcgtccacccggtggtcgatcggtccattaagattgccatgactacttgtgagcag
atagtcaggaaggactttgcgctggattcggaggagtcacggatgcgtgtggccgctcac
catatgatgcggaacctgactgctgggatggccatgattacctgcagggaacctttgctt
atgagcatagctaccaacttgaaaaatagttttgctactgcactgagggcagcctcccca
caacagagggacatgatggagcaggcagctgcccagttagcgcaggataactgcgagcta
gcctgctgctttatccagaagacagctgtggaaaaggcaggccccgagatggacaagagg
ctcgcaactgaatttgagctcagaaaacatgcgagacaagagggtcgtcggtactgtgat
cctgttgtgttaacttaccaggctgagcggatgccagagcagatcaggttaaaggttgga
ggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaacgtccctggcttc
ttgcctaccaatgacttaactcagcctacaggattcttggctcagcctatgaagcaagct
tgggctacagatgatgtggcacagatctatgacaaatgcatgacagaactggagcagcac
ctgcagtccattccgcacaccctagccatgaatcctcaagttcaagcattgcgcagcctc
ttggaggctgtggtggtggctcgtaactcccgtgatgctattgctgcacttggactactg
cagaaggctgtagagggtttactggatgccaccagtggggcagatgctgacctcctgctt
cgctaccgtgagtgtcacctgcttgtgctgaaggctctgcaggatggccgtgcgtatgga
tctccgtggtgtaataaacaaattactaggtgcctgattgaatgcagagatgagtacaag
tacaacgtggaagctgtggagctgctaatccgccatcaccttgttaatatgcaacagtat
gaccttcacttggctcagtcaatggagaatggcttgaactatatggctgtggcatttgcc
atgcagttggtaaagatcctgttggtggatgagaggagtgttgcccatgtgacagaggca
gatctgtttcacacaattgagacactcatgaggattaatgctcattccagaggaaacgcc
ccggaaggattaccccagctgatggaagttgtccgatcaaactatgaagcaatgattgac
cgtgctcacggaggtcccaatttcatgatgcattcaggaatttcccaagcctctgagtat
gatgatcctccaggtctgagggagaaggcagaatacctgctgagggagtgggtgaacctc
taccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgttggacag
gtagagcttttggaaagaaag
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