Aquarana catesbeiana (American bullfrog): 141106162
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Entry
141106162 CDS
T11018
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acat00536
]
141106162 (COL13A1)
Glycosaminoglycan binding proteins [BR:
acat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141106162 (COL13A1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
141106162
NCBI-ProteinID:
XP_073452796
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Position
LG08:167786075..168036290
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AA seq
580 aa
AA seq
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MPGRMGLKGQLGEKGAPGEPGMSVIGPRGPPGQPGTRGFPGFPGPIGLDGKSGHPGQKGE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NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgccaggacgaatgggattaaagggtcagcttggagagaagggcgctccaggagaaccg
ggcatgtctgtcataggaccccgtggccctcctggtcagcctggaacacgaggttttcct
ggatttcctggcccaataggattagacggcaagtcaggccatccagggcaaaaaggtgaa
aaaggagatatgggttctcctggtccaaagggaaatccaggaacagcaggtgccaaagga
gaaaagggtctttgtgcggattactcccacagggaatatttaagtacaacttttgcagct
ctgcgctccaatcagattcttactttgaagggtgaacagggtcaggccggaattcaaggt
ctaccagggctaccgggcccacctgggccacctggaccagcaggacctccaggagataca
ggattgtcagggattactggcccacctggaaaaacaggtgagcctggtaagccaggaaaa
gatggaaaaggcatgcctggacctcagggacccaagggagagccagggactgcaggaatc
ccgggaaggaagggcgatcagggcgaggtgggacagaagggagaaagaggcatgcccggg
atgccagggaaacatggagcaaagggtgaactaggagtctcaggagcaaagggtgaaaaa
ggtgacactggcaatgcacttggtggagttaaaggagaacctggtactccgggcctacca
ggacctccaggaccaaagggagaaaccggtgctgttggccaacctggaattccaggtcaa
gagggtgataagggtgctgcaggagcaaaaggagatcaaggcccttctggaccaagaggt
cctaaaggggatccaggaaaattcaacattgtggaatataatagcaacctaagtgaggca
ttacagggtcctcctgggccaccaggtgttccaggtgtaccaggacagaagggtgaaatt
ggattgcctggccctcctggccatgacggggacaagggccctcgagggaaacctggtgag
gttggaccttcaggtccagtaggacctccaggacaggatggacttcaaggaccaaaggga
gatacaggccctaggggaatgcaagggccaaaaggagataaaggagatgtaggacaagca
ggatcacccggtcttgatggccccactggagaaaagggagaccgtggcgaccaaggagtt
ccaggacctccaggtcttcctggcccaattggacttccagggcttacaggagagaagggt
gattctggagacaaaggagaatctggaaactccgtctctgggccaccaggacctccaggt
gtttctggacctgtgggcccacctgggcttcctggtcaaaagggcgaagtaggagagact
ggtgcaaatggggaaaagggaagtcagggagaaaaaggagataaaggtcctttgggctta
ccaggtgcttcaggtttagacggcagaattggtccaccggggatacctgggccaattgga
gttccaggaccagcaggaccaaaaggggagagaggcaataaaggggatcttggtgtaccg
ggaccaactggaccagcagggccacctggtcctattggtgaaaagggaagccggggggaa
agggggaagaaaggctctagggggcctaaaggggataagggagaccaaggagcgcctgga
ttagatgcaccctgcccgttgggagaagatggtttacctgtacaaggctgctggaataag
tga
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