Aquarana catesbeiana (American bullfrog): 141140023
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Entry
141140023 CDS
T11018
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat04510
Focal adhesion
acat04512
ECM-receptor interaction
acat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141140023 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141140023 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141140023 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
acat00535
]
141140023 (COL9A1)
Proteoglycans [BR:
acat00535
]
Extracellular matrix (ECM) proteoglycans
Others
141140023 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
141140023
NCBI-ProteinID:
XP_073482843
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Position
LG04:complement(305547548..305744500)
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AA seq
924 aa
AA seq
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MKGTWKVPLALYVISFLGPLVSATIEHYTRFPFNLKFNNIQHTCPPLNGGQDDLPGFDLI
SKFQIDRAASVGAIQSVVGTSPYQVAYQLGPNVDFRIMTRHIYGSGLPEEYSFMFTFRMK
ENSKNKYWTIWQIVDSEGKQQASINFNGPKKALEFSYKGTDGRLNTVTFKQLPFLFDTKF
HKVLFSVEKSKLTLYIDCIKVESFQLVPRGKISVDGYTILGKLKSNHEVSVPFDLQWMLI
HCDPLRPERESCTELEARRAVSQALLERGPPGPPGPAGPPGTSGVPGIDGIDGDRGPDGP
PGPPGPDGDPGKPGSPGLPGEPGADGLTGPDGSPGPLGPRGQKGEPGLPGARGLSGGGVS
GPRGTPGPAGLPGELGRSGPVGDAGSRGLPGPPGPPGPRGTVAVREGDPLCPNSCPPGRT
GYPGLPGMKGHKGVKGEVGEPGKQGHKGEEGEQGVIGEIGTQGPPGPQGLRGITGVMGPK
GSKGNRGVDGEPGPRGVAGATGDQGQRGSIGEAGPKGERGISGPRGISGMPGSKGEAGLP
GVDGRDGIPGMPAAKGDSGEPGAPGEAGLQGLPGLPGNPGAKGTAGEKGSSGAPGVPGLM
GNSGKPGDQGPQGEVGPRGPIGPPGDRGEAGPIGPPGPPGKRGSRGDPGFLGLPGPPGLP
GHKGDRGGVGETGPKGEQGGAGEEGFGGEKGEQGDLGNPGPKGSTGSPGESGNRGPEGGR
GIPGVEGPQGSSGPRGMQGEQGAPGLPGGQGPAGREPTDQHIKQVCMRVLQDQLANLAAS
LRRPESGAAGLPGKPGPPGPPGTPGDNGLPGHIGQRGLPGLKGPSGELGLRGQKGDSGER
GERGLPGRGPKGLPGLPGLTGEQGKPSYGRVGRDGERGPPGRAGQPGIPGPPGPPGQAGY
CDPSSCSLQALAAPQSAKDLKGPV
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcacctggaaagttccacttgccttgtacgtcatcagcttcctgggacccctg
gtatcagctaccatagaacattatacaagattccctttcaatctaaaattcaacaacata
cagcacacatgcccaccccttaatggtggacaggatgaccttccaggctttgatctgatc
tccaagttccaaattgacagagctgcctctgtcggggctattcaatcagtggtgggtact
tctccctatcaagtagcctatcagctggggcccaatgttgacttcagaatcatgacaagg
cacatctatggtagtggactaccagaggaatattcctttatgtttactttccggatgaaa
gaaaactcaaagaacaaatattggactatctggcaaattgtggactcagaagggaagcag
caagcttctattaatttcaatggccctaaaaaggctcttgagttctcatacaaaggaaca
gatggaagattgaacaccgtcactttcaaacagctcccctttttgtttgacaccaagttt
cacaaagtacttttcagcgtggagaagtctaaactcactctttacattgactgcatcaaa
gtggaatcattccagctggttcccagaggaaaaattagtgtagatggctatactatattg
ggaaaactgaagagtaaccatgaagtatctgtgccgtttgacctccagtggatgttaatt
cactgcgatcctctgcggcctgagagggagtcttgcaccgagctggaggccagaagagcg
gtcagccaggctctgctagagagaggaccacccggaccccctgggccagcaggtccccct
ggaacatccggagttcctggcattgatggcatagatggtgacagaggtcctgatggccct
ccaggaccaccgggtccagatggggacccaggtaaacccggatctcctggattgccaggc
gaaccaggagctgatggactgacaggacctgatggatctcctggcccccttggcccaaga
gggcagaagggtgaaccaggacttccaggggctcgtggactatctggtggcggagtttca
gggccaaggggaacacctggtccagcaggactcccaggtgagcttggtcgcagtggtcca
gtgggtgatgctggttccagaggtcttcctgggcctccagggccaccaggtcctagaggg
acagttgcagtgcgagaaggagatcccctgtgtcccaactcctgcccgccaggccgcaca
ggttatccaggtttgcctggaatgaagggccacaaaggtgtaaaaggagaagttggagaa
cctggaaaacaaggccataagggagaagaaggagagcagggagttattggagaaatcgga
acccaaggccctccagggccgcaaggcttaagaggaatcactggtgtcatgggacccaaa
gggagtaaaggtaaccgtggagtggatggagaacctggtccccggggagttgctggtgca
actggtgaccaaggccagcgaggttcaataggagaagctggacccaaaggtgaaagagga
atttctggaccaagaggaatttctggaatgccaggatctaaaggggaagcgggcttgcca
ggcgttgatggtcgagatggaatccctggaatgccagcagcaaagggtgattctggagag
cctggcgcccctggagaagctggactacaaggattgccaggtttgccaggcaatccaggc
gcaaaaggaactgctggagagaagggtagttctggtgcccctggcgtacctggcctaatg
ggaaactctggtaaacctggtgatcaaggaccacaaggcgaagttggcccaagaggaccc
attggacctccaggtgacagaggagaggcaggtcccattggcccacctggaccacctgga
aaacgaggttccagaggagatcctggattcttaggcttgccaggaccccctggtcttcct
ggacataaaggtgacaggggtggcgttggtgaaactgggcctaaaggtgaacagggtggc
gctggagaagaaggctttggaggagagaagggtgaacagggtgatttaggaaatccagga
ccaaaaggatctactggaagtcctggtgaatctggtaatcgtggtcctgaaggaggtcgg
ggcatccctggtgtagaaggtcctcaagggtcatctggtccccgagggatgcagggagaa
caaggagcccctggattacctggtggtcaaggtcctgcaggaagagaacctacagatcag
cacatcaaacaagtgtgtatgagagtgttgcaagatcagttagcaaacttggcagccagt
ctacgaagaccagaatctggagcagctggcctaccagggaaaccaggtccacctggtcct
cctggaactcctggggataatggtttaccaggacatattggacaaagaggacttccaggg
cttaaaggtccttctggggaacttggtcttagaggtcaaaaaggtgattctggagaaaga
ggagaaagaggattgccgggaagaggtccaaagggattaccaggattgccaggtcttaca
ggtgaacaaggcaaaccaagttatgggcgtgtgggtcgggatggagagagaggcccaccc
ggtagagctgggcagcctggaatccctggaccaccaggccctcctggacaagcaggatat
tgtgatccttcttcttgcagccttcaggcccttgctgctccacagtccgctaaagatttg
aaagggccagtgtga
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