Aquarana catesbeiana (American bullfrog): 141146920
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Entry
141146920 CDS
T11018
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat04510
Focal adhesion
acat04512
ECM-receptor interaction
acat04518
Integrin signaling
acat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141146920 (COL6A1)
04518 Integrin signaling
141146920 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141146920 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141146920 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acat04147
]
141146920 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
acat00536
]
141146920 (COL6A1)
Exosome [BR:
acat04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141146920 (COL6A1)
Glycosaminoglycan binding proteins [BR:
acat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141146920 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
141146920 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
141146920
NCBI-ProteinID:
XP_073489814
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All DBs
Position
LG06:complement(317060155..317136542)
Genome browser
AA seq
1044 aa
AA seq
DB search
MKMARGDLPLTLLHLFLLLGGGTAQQQGQGPIKVPEPGTGSDTEIIFPEPEKTSSYQDCP
VDIFFVLDTSESVALRVKPFKTLVTQVKDFTKRFIDKLTTRYYRCDRHLVWNAGALHYSD
DIILIKGLTSLPKDRDELKNRVDQVEYIGKGTHTDCAIKRGIEEILIGGSHQRENKYLIV
VTDGHPLEGYKEPCGGLEDAANEARHLGIKVFSVAISPNHLEPRLSVIASDPNYRRNFTA
TSAIGLSSDEIDNTIDTIIDTIKANGEHGCCSYECQPRRGEPGPPGPAGYEGETGKTGLP
GDRGPPGDPGRTGDIGPVGYQGMKGDLGVKGEKGARGAKGAKGDKGKRGIDGIDGQKGED
GEPGFPGCKGSPGFEGESGPPGPKGDPGSYGAKGGKGEPGLSGGAGKPGSTGNIGEKGDP
GPNGPPGEKGESGDDGDAGQDGPAGERGGAGERGPPGVSGVRGLRGDKGDPGQAGDQGRD
GPVGPIGDPGEPGPQGAKGYRGDEGPSGPEGTKGLRGAKGLPGEQGLAGERGDDGPPGNG
TDGFQGFQGYPGGRGDRGTNGTKGYPGPKGDEGEPGDPGDDSPDKGPDGPNGAKGYRGPE
GPSGPPGPPGPPGPDECEILDIIMKMCSCCDCVCGPIDVLFVVDSSESIGNTNFQLSKEF
IIKVIDRLSRDEHVKFDSGESRVGVVQYSHGDTQESVAMGDANIQTIGQLKEAIKNLGWI
AGGTWTGEALAFTKDNLLKKFASDKRVALVLTDGHSDILRDKTPLNTLCEVAPVVSLGVG
DIFQSAANPDQLGEIACGGASYSQGLSLQKASYTELLDDGFLQNLTAHICKDKKCPDYTC
AISFDVPADITLLVDSSASVGSRNFEISKSFVKRLAQRFLEAKSPAFDSVRLSVVQYSGR
TDQSVELQFVSNYTEAVIGIDSMKFINGGTDVGAALRSVTELYREVGEPGSTKKVLVFSD
GNTQAEGTLLQAVRDARAAGLEVSVLAIGNRPHEDNLRILLTGAPPDSKIAINERSLFRV
PDYPSLLRGVLFKTVSRRVSLKRQ
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaagatggcgcggggagacctcccgctcaccctgctgcacctctttcttcttctaggg
ggtggcacagcgcaacagcaggggcaagggcccatcaaagtcccagaacccggcactgga
tctgataccgagatcatcttccccgagcctgagaagacttcatcttaccaagactgtcca
gtggatatcttctttgttttggatacatctgaaagtgttgctctccgtgtgaaaccattc
aagactctcgtaacccaagtcaaggattttaccaaaagattcatagataaactcacaaca
aggtattatcgctgtgaccgtcaccttgtatggaatgctggagctctccactacagtgat
gacatcattctaattaagggtctaaccagtctgcccaaggaccgtgatgagctgaaaaac
agagtggatcaagttgagtacattggtaaaggaacccatactgactgcgccatcaaaaga
ggcattgaagagatcttaattggaggatcccaccagagagagaacaagtatctgattgtg
gtaacagatggtcatccattggaagggtataaagagccatgtggaggtctagaagatgca
gcaaatgaagcaagacacttgggcatcaaagtcttctctgttgccatttcaccaaatcac
ctggaaccacgtctcagtgttattgcttcggatccaaattaccgtagaaacttcacagcc
accagtgccattggtctgtccagtgatgagatcgataacacaattgatactattattgac
actattaaagctaatggtgaacatgggtgctgctcttatgagtgtcagcctcgtcgtggg
gaacctgggccacctggtccagcaggctatgagggagagactggaaaaacaggacttcct
ggtgatcgtggaccccctggtgaccctggtcgtactggagacattggtcctgtaggttat
cagggaatgaagggtgacttgggtgtcaaaggagaaaagggtgcaagaggagcaaaagga
gcaaagggtgataaaggcaaaagaggaattgatggcattgatggacagaagggagaagat
ggagaacctggttttccgggctgcaaaggatcaccgggttttgagggggagtctggaccc
cctggtccaaaaggagatcctggatcatatggagcaaaaggaggaaaaggagagcctgga
ttatctggtggtgcaggaaaacctggtagcacgggaaatataggtgaaaagggagatcct
ggaccaaatggcccaccaggagaaaaaggagagtcgggtgatgatggtgatgctggacaa
gatggacctgcaggcgaaaggggaggtgcaggagagcggggtccaccaggggtgtctgga
gtccgaggacttagaggagacaagggtgatcctggacaggcaggagatcaaggacgagat
gggcctgttggtcccattggagatccaggggaaccagggccacaaggagccaaaggctac
agaggagatgaaggacccagtggccctgagggaacgaaaggactaagaggagctaaagga
ctacccggagagcaaggactagcaggcgagaggggagatgatggccctccaggaaatggt
actgatggattccaaggattccaagggtaccccggaggtagaggtgatcgaggaactaat
ggaacaaagggatatcctggaccaaaaggagatgaaggagagcctggagatcctggtgat
gatagtccagataaaggtcctgatgggcccaatggagcaaagggttacagaggaccagaa
ggaccatcgggacctccaggacctccaggcccaccaggcccagatgagtgtgaaattctg
gacattatcatgaagatgtgctcttgctgtgactgcgtatgtggtcctattgatgtactt
ttcgtagttgacagttctgaaagtattggtaacaccaatttccagctatcaaaagaattt
ataataaaagttattgatcgtttgagcagggacgaacatgtcaagtttgactctggagaa
tcccgagttggagtggtgcagtacagccatggagacacccaggaatctgtagccatggga
gatgccaatatccagactattgggcagctgaaagaggctattaagaatttgggctggata
gccggtggcacctggactggagaggcacttgctttcacgaaagataacctactaaagaag
tttgcatcagacaagagagtagcacttgttttgacagatggccactctgatatcctgagg
gacaagacaccactgaacacattgtgcgaggttgctccggttgtgtctttgggagttggg
gatatcttccagtctgctgcaaaccctgatcagctgggtgagattgcatgtggaggagca
tcatatagccaaggactgtctctacagaaggccagctatacggaactgcttgatgatggc
ttcctgcagaatttgactgctcatatttgtaaagataagaagtgccctgattacacttgt
gccatatcatttgatgttcctgctgacatcactctacttgtggacagctctgcaagtgtt
ggcagccgaaactttgaaataagcaaaagctttgtgaagcgactggcacagcgtttccta
gaggctaaaagtcccgcatttgactctgtgagactatctgtggtacagtatagtggccgt
actgatcagagtgttgagctgcaatttgtttccaactatacagaagcagtgattggaata
gacagtatgaagtttataaatggaggcacagatgtgggagcagcattgcgttcagtcaca
gaactttatcgtgaagttggtgaaccagggtcaactaagaaggtgttggtcttctccgat
ggaaacacacaagcagaaggaacacttctacaggctgtaagagatgcccgggcagctggc
cttgaggtttcagttctggcaataggaaaccgacctcacgaggacaatctaagaatactg
ctaacgggtgctcctcctgattccaagattgccataaatgagaggagcctattccgtgtt
cctgattatccttctctactcagaggtgttttgttcaagaccgtgagccgtcgagtgtct
ctcaaacgccagtaa
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