Achromobacter sp. HNDS-1: ABFG95_14580
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Entry
ABFG95_14580 CDS
T10763
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
achh Achromobacter sp. HNDS-1
Pathway
achh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
achh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABFG95_14580 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
achh03021
]
ABFG95_14580 (rpoB)
03400 DNA repair and recombination proteins [BR:
achh03400
]
ABFG95_14580 (rpoB)
Enzymes [BR:
achh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABFG95_14580 (rpoB)
Transcription machinery [BR:
achh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABFG95_14580 (rpoB)
DNA repair and recombination proteins [BR:
achh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABFG95_14580 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XBP01657
UniProt:
A0AAU7LJN4
LinkDB
All DBs
Position
complement(3131476..3135588)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI
FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKSEG
AMMEFVPERWKGEMARFDIADRSGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDFLYGR
VLAKNIVDADTGEVIANANDEITESVLGALRAANVHDIQTLYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGEDI
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
VDGRVSDQIDYLSAIEESHYVIAQANAALDDEGKFVDDLVACREAGETMLTAPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATITKAYLADLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGHRIADMLRDERTAQVKNVRAYLDKVYNTTGTGARIDELTDEEVMEMAQNLKNGVPF
ATPVFDGATEEEITKMLELAYPDDVAKRMALTPSRTQAWLYDGRTGEKFERPVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttcccttccttttggcgactcagcttcaatcctacctaactttcctgcag
gcggataccgccccgtccgatcgcgtagccgacggtttgcaggcggcgttttcgtcgatt
ttcccgatcgttagtcacaacggtatggcgcgcttggagttcgtgagctatgtgctcggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggcctgacctatgcctcgcccctg
cgagccaaggtccgcctggtgctgcttgaccgcgaagtcagcaagcccaccgtcaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgggcaccggttcgttc
gtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgctcgcccggcgtgttc
ttcgaacacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcccgcgtg
attccctaccgcggctcgtggctggacttcgaattcgaccccaaggacatcctgttcttc
cgcgtcgaccgtcgccgcaagatgcctgtcacgatcctgtgcaaggccatcggcatgacg
ccggaatcgatcctggccaacttcttcgacttcgacaacttcgagttgaagagcgaaggc
gccatgatggaattcgtgcccgagcgctggaagggcgaaatggcccgcttcgacatcgcg
gaccgctccggcaaggtcatcgtcgaaaaagacaagcgtatcaacgccaagcatctgcgc
gacctggctgccggcggcatccagcgcatctccgtgccggaagacttcctgtacggccgc
gtgctggccaagaacatcgttgacgccgataccggcgaagtcatcgccaacgccaacgac
gagatcaccgaaagcgtgctgggcgccctgcgcgccgccaacgtgcacgacatccagacg
ctctacacgaacgatctggatcgcggcccgtacatctcgcagacgctgcgcaccgatgaa
accgccgaccagatggccgcgcgcgttgccatctaccgcatgatgcgtcctggcgaaccg
cccaccgaggaagcggtggaagcgctgttccagcgcctgttctacagcgaagaaacgtac
gatctgtcgcgcgtcggccgcatgaaggtcaacagccgtctgggccgtggtgaagacatc
accggtccgatgacgctgaccaacgaagacatccttgaaaccatcaaggtgctggtcgag
ctgcgtaacggccgtggccagatcgacgacatcgatcacctgggcaaccgccgcgtgcgt
tgcgtcggcgaactggccgagaaccagttccgcgccggcctcgtgcgcgtcgaacgcgcc
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcatgacctgatcaac
tccaagccgatctcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttcggcactgggc
ccgggcggcctgacccgcgagcgcgccggcttcgaagtccgtgacgtgcatccgacccac
tacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcc
atggcgctgtacgctcgcctgaacgagtacggcttcctggaaacgccttaccgcaagatc
gtcgacggccgcgtcagcgaccagatcgactacctgtcggccatcgaagaaagccattac
gtgatcgcgcaggccaacgccgcgctcgatgacgaaggcaagttcgtggacgacctggtg
gcttgccgtgaagccggcgaaaccatgctgaccgccccggccaacgtgcactacatggac
gtggccccgtcgcagatcgtgtcggtcgccgcctcgctgattccgttcctggagcacgac
gacgcgaaccgcgcgctgatgggtgccaacatgcaacgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtgggcacgggtatcgagcgcaccgtggccgttgactcgggcacc
accgtgcaggcgctgcgtggcggcctggtcgaccacgtcgacgccgagcgcgtggttatt
cgcgtgaacgacgaagaaaacgtcgccggcgaagtcggtgtcgatatctacaacctgatc
aagtacacgcgttccaaccagaacacgaacatcaaccagcgtcccatcgtcaagcgcggc
gaccgtgtcgccaagggtgacgtgctggccgacggcgcatcgacggacctgggcgaactc
gccctgggccaaaacatgctgatcgcgttcatgccctggaacggctacaacttcgaagac
tcgatcctgatctccgaaaaggtcgtggccgatgaccgctacacctcggtgcacatcgag
gaactgacggtcgtggcccgtgacaccaagctgggtccggaagaaatcacgcgcgacatc
agcaacctggccgagacgcaactgaaccgcctggacgattccggcatcacctacatcggc
gccgaagtcagcgccgacgacgtgctggtcggcaaggtcacgcccaagggcgagacccag
ctgacgccggaagaaaagctgctgcgcgccattttcggtgaaaaggcgtccgacgttaag
gacacctcgctgcgcgtgccttcgggcatgaccggcaccgtcatcgacgtgcaggtgttc
acccgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctatcgccaggacctgaatgaccagctgcgcatcgttgaaaacgaccagttcgaccgt
atcgagaagatgctggtcggcaagaccgtcaacggcggcccgcgcaagctggccaagggc
gcgacgatcaccaaggcctacctggccgacctggatcgctggcagtggttcgacatccgc
ctggccgacgagccccacgccgtcgtgctggagcaggccaaggaatcgctcgagcagaag
cgtcaccagttcgacctggccttcgaagagaagcgcaagaagctgacgcagggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctacctggccgtgaagcgtcgtctgcag
cctggcgacaagatggcaggccgtcacggcaacaagggcgtcgtctcgcgcatcaccccg
gtggaagacatgccgcacatggctgacggcacgccggccgacatcgttctgaacccgctg
ggcgtgccctcgcggatgaacgtgggccaggtgctggaagtgcacttgggctgggctgcc
aagggcgtgggtcaccgcatcgccgacatgctgcgcgacgagcgcaccgcgcaggtcaag
aacgtccgtgcgtacctggacaaggtctacaacacgaccggcaccggcgcgcgcatcgac
gagctgaccgacgaagaagtcatggaaatggcccagaacctcaagaacggcgtgccgttc
gcgacgcccgtcttcgacggcgcgaccgaagaggaaatcaccaagatgctggaactggcc
tatccggacgacgtcgccaagcgcatggcgctgacgccctcgcgcacgcaggcgtggctg
tacgacggccgcaccggcgagaagttcgagcgtccggtcaccgtcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggtccgtactcg
ctcgtgacccagcagccgctgggcggcaaggcgcagttcggtggccagcgtttcggggaa
atggaagtgtgggcgctggaagcctacggcgccgcctacaccctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgcaccaaggtatacgaaaacatcgtcaagggcgat
cacgtcatcgatgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ttggccctggacatggatttggagcgtaactaa
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