Acanthisitta chloris (rifleman): 103809282
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Entry
103809282 CDS
T08456
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103809282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
achl03019
]
103809282
Messenger RNA biogenesis [BR:
achl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103809282
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103809282
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103809282
NCBI-ProteinID:
XP_009080358
LinkDB
All DBs
Position
Unknown
AA seq
1805 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHAVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLSGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQKELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEG
NT seq
5414 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatctactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactcattcagctcagat
ctaagaggttttgctgcccagttcatcaaacagaaactcccggatctcttgcgctcttac
attgacgcggacgtcagtggaaaccaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctgctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gaacagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttccctggcagatttcatgcaa
gaagttggctatggcttttgtaccagtgtcgaagaatgtcgcaacatcatcatgcagttt
ggcgttcgggaagtcacggctgctcaggtcgccagggtgttggggatgatggctcgaact
cattcaggattgacagatggtattccattacagtctatttcggctcctggcagtgggatt
tggagtgatgggaaagataagaatgatggagcccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaagtggtgacgtacgag
ttggaccatccaggatttcagattcgtgacagtaagggcctgcatattgtagtgtttggc
atccagagagggctgggcatggaggtttttccggtgaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatgctgttaccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctagatttgatcgaatctctgttacgactg
gctgaagtggggcagtatgaacaggttaagcagctcttcagtttccctatcaagcattgc
ccagatatgctggtattggccttactgcagatcaacacgtcctggcataccttgcgccac
gaactcatctccacactcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gcgatggcagaatggtacatgagaggggaacagtatgaccaagcaaaattgtcacgaatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagcttcctccggaaaccttggcgactatgttggcctgtctccaagcctgtgctggg
agtgtttctcaggagctgtcagagacgattctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcggcagccaccacctggagtgatgccgaaaggtcgcccgcccagcgcc
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcgggaatggcatctctt
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacctg
ggctctgcattcagtactcctcagtcaccagcaaaagcgttcccccctctttccacccag
aaccagacgacaggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgagtggcataggaactggagccctgggccttcctgctgtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
catcccaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaagactccaac
attaaacgtgaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagacaaggagctgcacatcactgcctgcctctttggtgggatc
atagagaaaggactggttacatatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggatcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccaccgttgcaaaaacgattacaatcaccagaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagagaattgtggaaccaccagagaatgtccaggaaaaaattgct
ttcatcttcaataatttgtctcagtccaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtaccttgtgatgaagagagtcagt
attgagcctaactttcacagcttgtattcaaacttccttgacacacttaagaatccagag
tttaataagatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagctaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgctg
ctactggaagcatatgttaagggacagaaggaattgctctatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctgtgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtttgctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacctgtacagccacagtccctccacagcctcagtacagttatcat
gacatcaatgtctattctttaggaggtttggccccacatattaccttaaatccaacgatc
ccgctgttccaagcccacccgcagctgaagcagtgtgtgcggcaggcgatagagcgtgcg
gtgcaggacctcgtgcatcccgtggtggatcgatccattaagattgccatgacaacttgt
gagcagatagtcaggaaggactttgctctggattcggaggagtcacggatgcgtgtggcc
gcacaccacatgatgcggaacctgactgctgggatggccatgatcacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaacagttttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagctggcttgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggcttgcaactgaatttgagctcagaaaacatgctagacaagagggtcggcgatac
tgtgatcctgttgtattaacttaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtcgacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcccaccaacgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacagatctatgataagtgtatgacagaactggag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagtccaagccttgcgt
agtctcttggaggctgtggtggtggctcggaactcccgcgatgctattgctgcacttggc
cttctgcagaaggctgtagagggtttgctggatgccaccagtggggctgacgctgacctt
ctgctccgctatcgcgagtgccatctgcttgtgctgaaggctctgcaggatggccgtgcc
tatggctctccctggtgtaacaaacaaattaccaggtgcctgattgaatgcagagatgag
tacaagtacaatgtggaagctgtggagctgctcatccgcaatcacctcgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactatatggctgtggca
tttgccatgcagctggtaaaaatcctgttggtggatgagagaagtgtcgcccacgttaca
gaagcagatctgtttcacaccattgagacactcatgagaattaatgctcactccagagga
aatgccccagaagg
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integrated database retrieval system
