Anaerocolumna chitinilytica: bsdcttw_03450
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Entry
bsdcttw_03450 CDS
T07655
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acht
Anaerocolumna chitinilytica
Pathway
acht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bsdcttw_03450 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acht03021
]
bsdcttw_03450 (rpoB)
03400 DNA repair and recombination proteins [BR:
acht03400
]
bsdcttw_03450 (rpoB)
Enzymes [BR:
acht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bsdcttw_03450 (rpoB)
Transcription machinery [BR:
acht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bsdcttw_03450 (rpoB)
DNA repair and recombination proteins [BR:
acht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bsdcttw_03450 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
BCJ97304
UniProt:
A0A7I8DIV8
LinkDB
All DBs
Position
391019..394852
Genome browser
AA seq
1277 aa
AA seq
DB search
MDKNRIRPIKVGNGVRMSYSRQKEVLEMPNLIEVQKDSYQWFLDEGLKEVFEDISPIEDY
SGHLSLEFVDFALCEDDVKYSIEECKERDATYAAPLKVKVRLHNKENDEINEHDIFMGDL
PLMTETGTFVINGAERVIVSQLVRSPGIYFAIGHDKIGKRLFSSTVIPNRGAWLEYETDS
NDVFYVRVDRNRKVPITVLIRALGIGSNIEIQELFGEEPKILASITKDPSDNYQDGLLEL
YKKLRPGEPLSVESAESLINSMFFDPRRYDLAKVGRFKFNKKLALKNRVIGCTLAEDVVN
KETGEIIAEAGTVISEDLAVEIQNAAVRSIMVQAEERNVKVLSSLMVDLNYYLDVDKKEL
GITEEVYYPALKNILDEYKNIEDIKTAIKRNIAELIPKHITKDDIIASINYNIHLEYGIG
GSDDIDHLGNRRIRAVGELLQNQYRIGLSRMERVVRERMTTQDLEGVSPQSLINIKPVTA
AVKEFFGSSQLSQFMDQHNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCP
VETPEGPNIGLINSLASYARINEYGFIEAPYRKVDKTDPKNPRVTDEVVYLTADEEDKYV
VAQANEPLDENGYFTDSNISGRFREETLEYPKSRIDLMDVSPKMVFSVATAMIPFLENDD
ANRALMGSNMQRQAVPLLITESPVVGTGIELKAAVDSGVCVVSEKAGVVEKSTSKEIIIK
NSDGTKSNYKLLKFARSNQGTCINQRPIVVKGDKIDAGQVIADGPSTSNGELALGKNPLI
GFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAESRDTKLGPEEITRDVPGVGDDAL
KDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPH
GEYGIIVDAKVFTRENGDELSPGVNQTVRVYIAQKRKIQVGDKMAGRHGNKGVVSRVLPA
EDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLASKVLGFKVATPVFDGANEYDIM
DTLELANDYVNTEWDEFYNKYKEVLDPEVMDYLENNKAYRDQWKGVPINRDGKVRLRDGR
TGEYFDGAVTVGFMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVTGRVKTYEAIIKGENISDPGIPESFKVLLKELQSLALD
VIVLDENGHEIKMTENIDYGDGDLTPLIEGDNNFHYDEDYTEAGYRETTAEEEESFFDPF
DEETVELTDLDDEDFEE
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaacaggatacgtccaatcaaagttggaaacggcgtaagaatgagctattct
aggcaaaaagaagtactggaaatgccaaatctgattgaagttcaaaaagattcctatcag
tggtttttagatgaaggactgaaggaagtttttgaagatatctctccaattgaagattac
agtgggcatttaagcttagaatttgtagattttgcgttgtgcgaagatgatgtaaaatat
tcaattgaagagtgcaaggaaagagatgcaacctatgcagctcctttaaaggtgaaagtc
agacttcacaacaaagagaacgatgagatcaatgagcacgatatttttatgggtgacttg
cctttaatgacggaaaccggaaccttcgtaataaacggagcagaaagagttatcgttagc
cagttggtacgttcccccggaatttactttgccatcggacatgacaaaatcggtaagaga
ttgttttcttctactgttattcctaacagaggagcatggttagagtatgaaacagattca
aacgatgttttttatgttcgtgtggatcgtaacagaaaggttcccattactgtattaatc
cgtgccttaggtatcggcagcaatatagagattcaggagcttttcggagaagaaccgaag
attttagcaagtataacaaaggatccatctgataattatcaggatggtttacttgagttg
tataaaaagctgcgtcccggcgaaccgctttctgtagaaagtgcggaatctttaatcaac
agtatgttttttgaccccagaagatatgatcttgcaaaagtaggtagattcaaattcaac
aaaaaacttgcgcttaagaacagggtaataggttgtactctggctgaggatgttgtaaat
aaagagaccggtgagattattgcagaagctggtacagttatatcagaagatcttgcagtt
gagattcagaatgctgctgttcgctctataatggtacaagcggaggaaagaaatgtcaag
gttctctccagtttaatggttgacttgaattattatctggatgtggataagaaagaattg
ggcataacagaggaagtttattacccggctctgaagaacatcttggatgaatataagaat
atagaggatattaagactgctattaagagaaatatagctgaattgattcctaaacatata
acaaaagatgatattatagcatctattaactataatattcatttggaatacggcattggt
ggttctgatgatattgaccacttaggtaacagaagaatccgtgcagtgggcgaattatta
cagaaccaataccgtatcggtctttccagaatggaacgtgtggttagagaaagaatgact
acacaggatttagaaggcgttagccctcagtccttaattaatatcaaaccggttacagct
gctgtaaaagaattctttggaagttctcagctgtcacagttcatggatcagcacaatcct
cttggtgagctgactcataaaagacgtctttcagccttaggacctggcggtttgtcccgt
gatcgtgccggattcgaggttcgagatgttcactattcccattatggcagaatgtgccct
gtagaaacacccgaaggtcctaacatcggtcttattaactcccttgcttcttatgcaagg
attaatgagtatggattcattgaggcaccttaccgtaaagtggataaaacagaccctaag
aaccctagagttaccgatgaagtagtatatcttactgctgatgaagaagataaatatgta
gtagcacaggcaaatgaacctttggatgaaaacggatattttacagacagtaatatatca
ggccgttttagagaggaaactctggaatatccgaagtcaagaattgatttaatggacgta
tctcctaagatggtattttctgtggctaccgctatgattcctttccttgaaaatgatgat
gctaaccgtgccctcatgggttctaacatgcagcgtcaggcggttcctctattaattacc
gaatcccctgttgttggtaccggtattgaattaaaggccgcagttgactccggtgtatgc
gtagtatccgaaaaagccggcgttgttgaaaagtccacttcaaaggaaatcataatcaag
aacagcgacggaactaagagtaattacaaattgttaaaatttgcaagaagtaaccaggga
acctgtattaatcagagacctatcgttgtaaagggtgataagattgatgccggccaggtt
atagcagatggtccttctacctccaatggtgaattagcattaggtaagaatcctcttatc
ggatttatgacctgggaaggttataactacgaagatgctgttcttttaagtgaaagactt
gttcaggaggatgtttatacatccgttcatatagaagaatacgaagcagagtccagagac
accaagttgggaccggaagaaattacaagagatgttcccggtgttggtgacgatgcctta
aaagaccttgatgaacgaggtattataagaatcggtgctgaagtacgtgccggagatatt
ctggtaggtaaggtaacaccaaagggtgagaccgaacttacagcagaagagagacttctt
cgtgcaattttcggcgagaaggcacgagaagtaagagatacatcccttcgtgtgcctcat
ggcgaatatggtattatcgtagatgccaaagtgtttacaagagaaaacggtgatgaactc
tctcccggagtgaatcagactgttagagtatatattgcccagaaaagaaagattcaagtc
ggagataagatggctggtcgacatggtaacaagggtgttgtatcccgtgtattaccggca
gaagatatgcctttcttaccgaacggcagacctcttgatatcgtgcttaatccgctgggt
gtgccttcccgtatgaatatcggtcaggtacttgaaatccacttaagccttgcatcaaaa
gtacttggatttaaggtagcaacacctgtatttgatggtgccaacgagtatgacattatg
gatactctggaacttgccaatgattatgttaatacagagtgggatgaattctataacaag
tataaagaagttcttgatccggaagttatggattatttagagaacaataaagcatataga
gatcaatggaagggtgttcccattaacagagacggtaaagtaagactccgtgatggaaga
accggtgagtattttgatggagctgtaaccgtaggtttcatgcactacttaaaacttcac
catcttgtagatgataagattcatgcacgttctacaggaccttactccttagtaacacag
cagcctttaggtggtaaagcacagttcggtggacagagattcggtgagatggaggtttgg
gcactggaagcttacggtgctgcttatactcttcaggaaatccttactgtaaaatccgat
gatgttacgggacgtgtaaagacttatgaagcgattataaaaggtgagaatatttccgat
cccggaattccggaatccttcaaggtgcttttaaaagagcttcagtcactggcgctggat
gttatcgtactggatgaaaatggtcacgaaattaaaatgacagaaaacattgattacggc
gatggcgatttgactcctcttatcgaaggtgacaacaacttccattatgacgaagattat
acggaagccggataccgtgagacaactgctgaagaagaagagagtttctttgatccgttt
gacgaagagacggtagaacttactgacttggatgatgaagatttcgaggaatag
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integrated database retrieval system
