Anaerocolumna chitinilytica: bsdcttw_03460
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Entry
bsdcttw_03460 CDS
T07655
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acht
Anaerocolumna chitinilytica
Pathway
acht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bsdcttw_03460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acht03021
]
bsdcttw_03460 (rpoC)
03400 DNA repair and recombination proteins [BR:
acht03400
]
bsdcttw_03460 (rpoC)
Enzymes [BR:
acht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bsdcttw_03460 (rpoC)
Transcription machinery [BR:
acht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bsdcttw_03460 (rpoC)
DNA repair and recombination proteins [BR:
acht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bsdcttw_03460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
Motif
Other DBs
NCBI-ProteinID:
BCJ97305
UniProt:
A0A7I8DJX8
LinkDB
All DBs
Position
394972..398700
Genome browser
AA seq
1242 aa
AA seq
DB search
MMPEVVNNQSNQEITYDAIKIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCEKI
FGPSKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIP
SRMGLILDLSPRTLEKVLYFASYIVLDKGTSDLQYKQVLNEKEYREAYEKYGNRFRVGMG
AEAIQELLMAIDLEAESKELKKGLKDFTGQKRARVIKRLEVVEAFRESGNRPDWMILTVV
PVIPPDLRPMVQLDGGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
IYQCGLPKEMAIELFKPFVMKELVAKGTAHNIKSAKKMVERLQSEVWDVLEEVIREHPVM
LNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRF
LLLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTLQKPGDLGEGHFFKSVNEAILAYENGAI
TLHARIKVRRTGINSEGVTITKTIESTLGRFIFNEIISQDLGFVDRTNSDNFLVPEVDFH
VGKKQLKKILEKCINTHGATKTAETLDAIKSLGYKYSTRAAMTVSISDMTVPPQKKIIIA
EAESRVEEISKNFRRGLMTEDERHKAVIDTWKVADDDITEALLTGLDKYNNIYMMADSGA
RGSDKQIKQLAGMRGLMADTSGRTLELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRT
ADSGYLTRRLVDVSQDLIIREVDCCEGKEIPGMWIKAFADGSEVIESLEERITGRYSCET
IQDDNGEVIVKANHMITPKRAAKIVATQKISEQGFNAKIKIRTILTCKSHIGVCAKCYGA
NMATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKP
KGLAIIAEFGGVVTIKDTKKKREVIVTNNETGEAKTYLIPYGSRIKVLDGDVLEAGDELT
EGSVNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKIRIENSGD
SEFLPGKLVDILEFEDVNEELESKGLPIADGKQVMLGITKASLATNSFLSAASFQETTKV
LTEAAINGKIDPLIGLKENVIIGKLIPAGTGMKRYRSVKLDSDMEEEILLSEDFDDDNYQ
NFNYSDDAMDDDLDSIDLDEFEDEDFSEEDFENDESLDDSDK
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgatgccagaagtggtaaataaccaaagtaatcaggaaataacctatgatgctataaag
atcggccttgcttctcctgaaaaaatcagagagtggtccagaggcgaagtaaaaaaaccg
gagacaattaactacagaaccttaaaaccggaaaaagacggtttgttctgtgagaaaatc
tttggacccagcaaagattgggagtgtcactgcggtaaatataaaaagattcgatataag
ggtgttgtatgtgacagatgtggtgttgaagtaaccaaagcttctgtccgcagagagaga
atggggcatattgaacttgctgcccctgtatcccatatatggtactttaaaggaatcccc
agccgtatgggattaattctggatttatcccccagaactcttgaaaaggtactttacttt
gcttcctatattgttcttgataaaggaaccagtgatttacagtacaaacaggttttaaat
gaaaaagaataccgtgaagcttatgaaaagtacggcaacagattccgtgttggaatgggt
gctgaagctattcaggaacttttaatggcaattgacctggaagcagaatccaaagaactg
aaaaaaggtttgaaggattttaccggacagaagagagcaagagttatcaaaagactggag
gttgttgaagccttccgtgagtctggtaacagaccggattggatgatacttactgtagtt
ccggttattcctccggatttaagacctatggttcagttggatggcggacgttttgctact
tccgatatgaacgatttatatagaagaattatcaaccgtaacaaccgtctgaagagactt
ttagagcttggtgcaccggatattattgtaagaaatgaaaagagaatgcttcaggaagca
gttgatgctttaattgataacggcagaagaggaagaccagttaccggtcctggaaaccgt
gcattaaaatccttatctgatatgttaaagggtaagcagggacgtttccgtcagaactta
cttggtaaacgtgttgactactccggacgttctgttatcgtagtaggacccgaattaaag
atttatcagtgcggtctgcccaaagaaatggcaatcgaattattcaaacctttcgttatg
aaagagttagttgccaagggcactgctcataatataaaatccgctaaaaagatggtggaa
aggcttcagtctgaggtatgggatgtgttagaagaggtaatcagagagcatccggttatg
cttaaccgtgctccgactcttcacagacttggtattcaggctttcgagccggtattggta
gaaggtaaggctattaagctgcatcctcttgtttgtactgctttcaatgccgatttcgat
ggtgaccagatggctgtgcatttaccgttatccgtagaagctcaggccgagtgcagattc
cttcttctctctcctaacaacctcttaaaaccttccgacggtggacctgtagccgttcct
tcacaggatatggtacttggtatctattaccttaccttgcaaaaacccggtgaccttgga
gaaggacatttctttaagagtgttaacgaagctatcttagcttatgaaaatggtgccatt
actcttcatgcaagaataaaagtaagacgtaccggtattaatagcgaaggcgttaccata
accaaaacgattgagtccactttgggacgttttatcttcaatgaaatcatcagccaggat
ttgggattcgtagacagaacaaattcggataacttcctggtacctgaagttgatttccat
gtaggtaagaagcagttaaagaaaattcttgagaaatgcattaatacccatggagctact
aagacggcagaaactctggatgcaattaagtccttaggatataaatactccaccagagca
gctatgaccgtttccatctccgatatgaccgttcctcctcagaagaagatcattatcgca
gaagctgaatcaagagttgaagaaatctccaagaacttccgccgtggtcttatgacggaa
gatgaaagacacaaagctgtaattgacacctggaaagtagccgatgatgatattacagaa
gcgctgcttacaggacttgataaatacaacaacatttatatgatggctgattccggtgcc
cgtggttccgataagcagattaagcagcttgccggtatgcgtggacttatggcagatacc
tccggacgtaccttggaacttcctattaagtctaatttccgtgaaggtctggacgtattg
gaatactttatgtctgctcatggtgcgagaaaaggtctctccgataccgctcttcgtact
gccgactccggttacttgacccgtcgtctggtagacgtatcacaggatcttatcatccgt
gaagttgattgctgcgaagggaaagaaatccctggtatgtggatcaaagcgtttgctgat
ggcagcgaagtaattgaaagcttagaagagagaatcaccggaagatattcctgtgagacc
atccaggatgataacggcgaagtaatagttaaagctaaccatatgattactccgaagcgt
gcagctaaaatcgttgcgacccagaagatatcagaacagggctttaatgcaaaaataaag
attcgtaccatcttaacctgtaaatcacacattggtgtatgtgccaagtgttatggtgcc
aacatggcaaccggagaagctgttcaggttggtgaagcagtaggtattattgcagcacag
tctatcggtgaacccggtacgcagcttaccatgcgtactttccataccggtggtgttgcc
ggcgatgatattacacagggtcttccccgtgtagaagaattatttgaagccagaaagcct
aagggacttgcaattatcgcagagttcggcggcgttgtaaccataaaggatacgaaaaag
aaacgtgaagttattgtaacaaacaatgaaaccggagaagctaagacttatctaattcct
tacggttcacgtatcaaagtgttagacggtgatgtgttagaagccggtgatgaactgaca
gaaggtagtgttaatcctcatgatatcctaaagattaaaggtgttcgtgcggttcaggat
tacatgatccaggaagttcagcgagtttaccgcttacaaggtgttgaaatcaatgataag
cacattgaagtaattgttcgtcagatgttaaagaaaatccgcatcgaaaatagcggtgat
tctgaattcttgcctggtaaattagtagatattctggaatttgaggatgtaaatgaagag
ttagagagcaaaggacttccgatagcagatggaaagcaggtaatgcttggtataacaaag
gcttcccttgcaacaaactccttcctttcagcagcatccttccaggaaaccactaaggta
ttaacagaagctgctattaacggaaagattgatccattaatcggtctgaaggaaaatgtt
attatcggtaaattaatccctgccggaaccggtatgaagagatatcgctctgtaaaatta
gacagtgatatggaagaagagatacttctttctgaagattttgatgatgacaattatcag
aactttaattactccgatgatgctatggatgatgatttagacagtattgacctggatgag
ttcgaggatgaagatttctcagaggaagattttgagaatgatgaatccttggatgattct
gataaatag
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