Acinetobacter sp. Ac-14: IOD65_18230
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Entry
IOD65_18230 CDS
T11083
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acic Acinetobacter sp. Ac-14
Pathway
acic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IOD65_18230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acic03021
]
IOD65_18230 (rpoC)
03400 DNA repair and recombination proteins [BR:
acic03400
]
IOD65_18230 (rpoC)
Enzymes [BR:
acic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IOD65_18230 (rpoC)
Transcription machinery [BR:
acic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IOD65_18230 (rpoC)
DNA repair and recombination proteins [BR:
acic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IOD65_18230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QOW99020
LinkDB
All DBs
Position
complement(3822997..3827190)
Genome browser
AA seq
1397 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPIEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLTDEEYFNALEEHGDE
FTAKMGAEAVQDLLKDIDLEAEIARLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVAIHARVKVRVHQTVINENGEREHQTIIVDTTPGRCLLWEIVPQGLSFDMINLE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPTKHTIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTLVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTAGGLVMTPFIQGGDVIEPL
RDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEAGVDEVKVRSVIACESTFGVC
ARCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADDLGRERERYKLPYGASILLKDGEAVEAGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGVVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DITDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEHELHND
FSEVDQAFSQALNSEQF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgtaagaaaacggactcagatggtcatgcaccaatt
gagtttgaccgtatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcat
ggtgaagttaaaaaacctgagacaattaactaccgtacttttaaacctgaacgtgacggt
ttgttctgtgccaaaatttttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaactacagcg
aaagttcgtcgtgaacgtatgggtcacattgaacttgcttctccagttgcacatatctgg
ttcttaaaatcgttaccgagccgtatcggtttattattagatatgacacttcgtgatatc
gaacgtgtattgtatttcgaatcatacgttgtaactgacccaggtatgactccgtttgaa
aagtatcaacttttaacagacgaagaatacttcaatgcacttgaagaacacggtgatgaa
ttcactgcgaaaatgggtgcagaagcggttcaggacttgttgaaagatatcgatcttgaa
gctgaaatcgcacgtttacgtgaagaaattcctcaaacaacttctgaaacgaagttgaaa
aaagcgtctaagcgcttgaaattgatggaagcattcaaagattcaaacaacaagccagaa
tggatggtgatgaatgtacttccggtacttccacctgatttgcgtccattagttccactt
gaaggtggtcgtttcgcgacttctgacttgaacgatttataccgtcgtgtcattaaccgt
aacaaccgtttgaagcgtcttcttgaccttgctgctccagatatcatcgtacgtaacgaa
aaacgtatgttacaagagtctgtagatgcattgcttgataacggacgtcgtggtcgtgca
attactggttctaacaagcgtccattaaaatctttggcagatatgatcaaaggtaaacaa
ggtcgtttccgtcagaacttattaggtaagcgtgttgactattctggtcgttcggtaatt
actgtaggtcctactttacgtcttcaccaatgtggtcttccgaagaaaatggcacttgaa
ttattcaagccattcattttcgcgaaactacaagcttcaggtcaggcgactaccattaaa
gctgcgaagaaaatggttgagcgtgagactccggaagtttgggacgttcttgcttctgta
attcgtcaacacccagtaatgttgaaccgtgcgccaacacttcaccgtttaggtcttcaa
gcatttgaacctattcttattgaaggtaaggcaatccgtcttcacccactcgtttgtgct
gcgtttaacgccgacttcgatggtgaccaaatggcggtacacgttccattgacacttgaa
gcacagttagaagctcgtgcattgatgatgtcaacaaacaacatcctgtcaccagcaaac
ggtgagccaatcatcgttccttctcaggacgttgtcttgggtctttactacatcacacgt
gatgctgtaaatgccaaaggtgaaggcatggtgtttgcggatactcatgaggtaaaccgt
gcacttgctactggacaggttgctatccatgcgcgtgttaaagtacgtgtacaccaaact
gttatcaatgaaaatggtgaacgtgaacaccaaactattattgttgatacaacacctggt
cgttgtttgctttgggaaattgttccacaaggcttaagctttgacatgatcaaccttgag
atgactaaaaagaacatctctaaattgatcaactcttgctaccgtaaacttggtttgaaa
gatacagttatctttgctgaccaattaatgtacttgggcttccgtcaagcgactcgttca
ggtgtatctgtaggtatggaagacatgctcattccacctactaagcacacaattattgat
aaagcagaaacagaagttcgtgaaatcgaacaacagttcgaacaaggtttcgtaactgct
ggtgagcgttataacaaagttgtcgatatctgggcgcgtacaaacgaccaagttgctaaa
gcaatgatggataacttgtcttatacacttgttaaaaacaaacaaggtgaagacgagaaa
caaaaatcattcaacagcatctatatgatgtctgactcgggtgcccgtggtagtgcggcg
cagattcgtcagcttgctggtatgcgtggtttgatggcaaaaccggatggctcgattatt
gagactccgattaaagcgaacttccgtgaaggtttaacagtacttcagtactttatttca
acacacggtgcgcgtaaaggtttggccgataccgcattgaaaactgcgaactctggttac
ttgactcgtcgtcttgtagacgtagcgcaagacttggtaattactgaacctgactgtggt
acagcgggtggtttagtaatgactccattcattcagggtggtgatgtcatcgagccatta
cgtgaccgcgtattaggtcgtgtaactgctgaagacgtacgtcgtgcatctgatgatgaa
gttgtattacctcgtggtacgttaattgacgagaaaatcgcagctcagcttgaagaagct
ggtgtcgatgaagttaaagtacgttcagtaatcgcatgtgaatcaacattcggtgtatgt
gctcgttgttatggtcgtgacctcgcacgtggtcacttggtgaacccaggtgagtcagtc
ggtgtaatggctgcacagtcaatcggtgagccaggtacacagttaacgatgcgtacgttc
cacgttggtggtgctgcgagccgaacttctgctgcgaacagtgttcaagtacgtaacaaa
ggtactgtacgtttccataacgtgaaaactgtacaacatgcaaaaggccacttggtttca
gtttcacgttcaggtgaaattggtattgccgatgatttaggtcgtgagcgcgagcgttat
aaacttccgtacggtgcaagcatcttgttgaaagatggtgaagctgtagaagctggcggt
atcgtagcgacttgggatccgcatacacatccattagtaacagaagttgctggtaaagcg
cgcttcagccaaatcgctgatggcgtaactgcaacatcgaaaactgatgatgcaactggt
atgactactgttgaaatcttgcctgtaacagctcgtcctgcttctggtaaggatttacgt
cctgcaatcgtgttggatacaacagatggcggcgaacagttctacttcttgccacaaaat
acaatcgtaactgtccgtgacggcgaaacgattggtgtgggtgacgttattggtcgtgta
ccacaagaaacatcacgtactcgtgatattaccggtggtcttccgcgtgtagctgacttg
ttcgaagcgcgtaagccaaaagagcatgcaattcttgctgaagtatcaggtgttgtaagc
ttcggtaaagagactaagggtaaaaaccgtttggtaattactcctgatgatggttctgag
atttacgaagaattgattccaaaatggcgtcaaatcaacgtattcgaaggcgagcatgtg
aaccgtggtgagactatttctgatggtccacaaaacccacatgacatcttgcgtttgaaa
ggtgaagttgcattaactaactacatcgtgaatgaagttcaagacgtttaccgtctccaa
ggtgtaaaaatcaacgataagcacattgaagttatcgtacgtcaaatgttgcgtaaagtt
gatatcactgatggcggtgatacaagcttcattaaaggcgagcaagtggattacatccgc
gttgttcaagagaaccaagctgtcttggctcagaacaagttccctgcgaagtttgaacgt
caattgatgggtattacgaaagcatcgctttctactgactcgttcatctctgctgcatcg
ttccaggaaacaactcgtgtgttaactgaagcggctgtaacaggtaaagaagatgattta
cgtggcttgaaagaaaacgttgtagtaggtcgtttgattccagcaggtactggtctcgcg
taccacttagagcgtcgtcgtcaagaagcagaagctgcagagcatgagcttcataatgac
ttcagcgaagtagatcaagcatttagccaagcattaaactctgaacaattctaa
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