Acidiferrobacter sp. SPIII_3: C4901_01930
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Entry
C4901_01930 CDS
T05469
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4901_01930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acii03400
]
C4901_01930
Enzymes [BR:
acii01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C4901_01930
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C4901_01930
DNA repair and recombination proteins [BR:
acii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4901_01930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AWP22266
UniProt:
A0A2Z3R4A0
LinkDB
All DBs
Position
complement(370328..371146)
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AA seq
272 aa
AA seq
DB search
MPELPEVETTRRGLIPWMRGARIADLVVRDRRLRWPIAPDLGERLRGRTIRDIGRRGKYL
LVWLDRGALILHLGMSGSLRVVGDDAPAGPHEPFDLVLAGRPLIRIRLRDPRRFGALLHS
DDPLSHPLIATLGPEPLEAGFDGHYLRGRARGRTIAIRDLLLNGHVVAGIGNIYANEALF
EAGIHPRRPAGRISAGRYDALACAIIAVLSRAVSAGGTTLKDFAASDGQPGYFQQQLRVY
GRAGAPCPRCAAPVARLTAGARSSYYCPRCQH
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagcttcctgaggtcgagaccacccgccgggggctcatcccgtggatgcgcggg
gcacggatcgccgatctcgtggtgcgcgatcggcgcctgcgctggccgattgcccccgat
ctgggcgagcgcctgcgcggtcgcacgatccgggacatcggccggcgcggcaaatatctg
ctggtgtggctcgaccgcggggcgctgatcctgcatctgggcatgtccgggagcctgcgg
gtggtgggtgatgacgcgccggccgggccccatgagcccttcgacctcgtactggccggc
cgtccgctgatccgcatccgcctgcgcgacccgcgccgtttcggggcgctgctccatagc
gacgacccgctctcccatcccctcatcgccacgctcggcccggaacccctcgaggcgggc
ttcgacggccactatctgcgcgggcgggcccggggacggaccatcgccatccgcgacctg
ctcctaaacggccatgtcgtcgctggtatcggcaatatctatgccaatgaggcgctgttc
gaggccggcatccatccgcgccggccggcgggacgcatcagcgccgggcgctatgacgcg
ctcgcctgcgccattatcgcggtcctgtcgcgggcggtgtcggcggggggtacgaccttg
aaggatttcgccgcaagcgatgggcaaccgggatattttcagcagcaactgcgcgtctat
gggcgcgccggggcgccctgcccgcggtgcgcggcgccggtcgcgcggctcacggcgggg
gcgcgcagcagctattattgcccgaggtgtcaacactag
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