Acidovorax carolinensis NA3: CBP34_01615
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Entry
CBP34_01615 CDS
T04997
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acin
Acidovorax carolinensis NA3
Pathway
acin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBP34_01615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acin03021
]
CBP34_01615
03400 DNA repair and recombination proteins [BR:
acin03400
]
CBP34_01615
Enzymes [BR:
acin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBP34_01615
Transcription machinery [BR:
acin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBP34_01615
DNA repair and recombination proteins [BR:
acin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBP34_01615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
ART50617
UniProt:
A0A240U8E6
LinkDB
All DBs
Position
1:317617..321729
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGTRDSVLEVPYLLQMQKDAYTAFLQADKAPQKRTIEGLQAAFNAA
FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLM
DSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDFL
IGRVVARNIVDADTGEIIAKANDELTEALLKKLRSAGVQDVQCIYTNELDQGAYMSHTLR
IDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKIGRD
ESTGPMVLSNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDGKVTNDIDYLSAIEEGKYVIAQANAVLDKDGRLTGELVSAREKGESILCGADRVQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAVDS
GTVVTATRGGIVDYVDATRIVVRVNDAEALAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
KGDALVKGDVIADGASTDFGEIAIGQNMLIAFMPWNGYNFEDSILISERVVSEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLASVEKFHWFD
IRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGIGQRIGDMLQQEAKASELRKFLEEVYNSRGRTEDLSQLSDDDLMAMAANLTNGVPY
ATPVFDGASEDEIKAMLKLAYPDDLAERKGLTPERTQAYLFDGRTGDRFERPTTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcctataccgaacgcaagcgaattcgcaaaagtttcggcacccgcgatagc
gtgctcgaagttccttatctgctgcagatgcagaaggacgcatacaccgctttcctgcag
gctgataaagcaccccagaaaagaaccatcgaaggccttcaggctgcattcaatgcagcc
tttcctatcgtctcccacaatggttttgtggagatgaagttcatcgaatacaacctggcc
aagcccgcatttgacgtgcgcgaatgccagacgcgcgggctgacctttgcgtccgccgtg
cgggccaaggttcagctgatcatctatgaccgcgagtcctcgacgtcgcagtccaaggtg
gtcaaggaagtgaaggagcaagaggtctatatgggcgaagtgccgctcatgaccgataag
ggctcgttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctgcaccgttcgcct
ggcgtgtttttcgagcacgacaagggcaagacccacagctccggcaagttgctgttttca
gcacggatcattccttaccgcggctcgtggctcgacttcgagttcgatcccaaggacatt
ctgtatttccgcgttgaccgtcgtcgcaagatgcctgtcacgatcctgctcaaggccatc
ggtctgaacccggaatcgatcctggcgaacttcttcgtcaatgacaacttccgcctgatg
gacagtggtgcacaaatggaatttgtgtccgagcgtctgcgcggtgaagtggcccgtttc
gacatcaccgacaagtccgggaaggtcgtcgtggccaaggacaagcgcgtgacggctcgc
cacacccgcgaactggagcagtccggcaccacgcacatcagcgtgcccgaagacttcctc
attggccgcgtcgtggcccgcaacatcgtggatgcggacaccggcgaaatcatcgccaag
gcgaatgacgagctgaccgaagcgctgctcaagaagctgcgcagtgccggcgtgcaggac
gtgcagtgcatctacaccaatgaactcgaccagggtgcgtatatgtcgcacaccctgcgc
atcgacgaaacggtggacgagtttgccgcccgcgtggccatctatcgcatgatgcgcccc
ggcgagccgcccacggaagacgctgtgcaggccctgttccagcgcctgttctacaacccc
gacacgtacgacctgtcgcgcgtgggccgcatgaagttcaacgccaaaatcggccgcgac
gaatccaccggccccatggtgctgtccaacgaggacatcctggccgtggtcaagatcctg
gtggacctgcgcaacggcaacggcgaagtcgatgacattgatcacctgggcaaccgccgc
gtgcgctgcgtcggcgaactggccgaaaaccagtaccgcacgggcctggcacgtatcgaa
aaagcggtgaaggaacgtctgggtcaggccgagcaagagccgctgatgccgcatgacctg
atcaacagcaagccgatctcggcggcgctgaaggagttcttcggcgcctcgcagctgtcg
cagttcatggaccagaccaacccgctcgctgaaatcacgcacaagcgccgggtatctgcc
cttggcccgggcggtttgacccgcgagcgcgccggattcgaagtgcgtgacgtgcacgtg
acccactacggccgtgtctgtcctattgaaacgcccgaaggtccgaacatcggcctgatc
aactcgctggccctgtacgcccgcctgaacgaatacggcttcatcgaaacgccgtaccgt
cgcgtggtggatggcaaggtcaccaacgacatcgattacctgtcggccatcgaagaaggc
aagtatgtgatcgcgcaggccaatgccgtgctcgacaaggacggccgcctgaccggcgag
ttggtttcggcccgcgaaaagggtgaatccattctgtgcggagcagaccgcgtgcagtac
atggacgtgtcgcccgcgcagatcgtgtcggtagcggcctcgctcgtgccgttcctggag
cacgacgatgcaaaccgcgcactgatgggcgccaacatgtcgcgccaggctgtgcctgtg
ctgcgtcctgaaaagcccctggttggcacgggcatcgagcgcgtcgctgccgtggactcg
ggcaccgtggtcaccgccacccgtggcggtatcgtggactatgtcgatgcgacgcgtatc
gtggtgcgtgtgaacgacgcggaagccctggccggtgaagtgggtgtggatatctataac
ctcatcaagtaccagcgctccaaccagaacaccaacatccaccagcgccccatcgtcaag
aagggcgatgctctggtcaagggtgatgtgattgccgacggtgcatcgacggacttcggc
gaaatcgccattggccagaacatgctcatcgcgttcatgccatggaacggttacaacttc
gaagattcgatcctgatctccgaacgcgtcgtgtcggaagaccgctatacctcgattcac
atcgaggaactggtcgtcatggcccgtgataccaagctgggtgccgaagaaataacgcgc
gacatcccgaacctgagcgaacagcaactgaaccgcctggacgagtccggcatcatctac
gtgggtgctgaagtgcagcccggcgatacgctggtcggcaaggtcactcccaagggcgag
accacgctcacaccggaagaaaagctgctgcgcgcgatcttcggtgagaaggcctccgac
gtgaaggacacttcgctgcgcgtggaccagggctcgcaaggcaccgtgatcgacgtgcag
gtgttcacccgcgaaggtatccagcgcgacaagcgcgcccagcagatcatcgacgatgaa
ctcaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaagccgacgccttc
gaccgcatcgaaaagctgctgaacggccgcgtggccaacggtggcccgcaaaagctggcc
aagggcacgaagatcgacaaggcctacctggcctcggtcgagaagttccactggttcgac
atccgtcctgcggaagacgaagtcgccacccagctcgagtccatcaagaactcgctggag
caaacgcgccacagcttcgacctggctttcgaagaaaagcgcaagaagctcacgcagggc
gacgagttgcccgcgggcgtgctcaagatggtcaaggtgtacctggccgtcaagcgtcgc
ctgcagccgggtgacaagatggccggccgccacggtaacaagggtgtggtgtccaagatc
gttccggtcgaagacatgccctacatggccgatggcacgcctgccgacatcgttctgaac
ccgctgggcgtgccttcgcggatgaacatcggtcaggttcttgaggttcatctgggctgg
gccggtaagggcatcggccagcgcattggcgacatgctgcagcaggaggccaaggcgtcc
gaactgcgcaaattcctcgaggaggtctacaactcgcgtggtcgtaccgaagatttgtcg
caactgagtgacgatgacctcatggccatggcagccaacctcactaacggcgtgccgtat
gccacgcccgtgttcgacggtgcgtcggaagacgaaatcaaggccatgctgaagctggct
tatcccgacgatctggccgagcgcaaggggctgacccctgaacgcacccaagcctatctg
tttgacggccgcacgggtgatcgcttcgagcgtcccaccaccatcggctacatgcactac
ctgaagctgcaccacttggtggacgacaagatgcacgcccgctcgaccggtccgtactcg
ctcgttacgcaacagccgctgggcggcaaggcccagttcggtggacagcgtttcggggaa
atggaagtgtgggcgctggaagcctacggcgccgcgtatgtgctgcaggaaatgctgaca
gtgaagtccgacgacgtggtgggccgtaccaaggtgtacgaatccatcgtcaagggcgaa
cacgccatcgaagccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcg
ctgggcctggacatcgagctggaacgctcctaa
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integrated database retrieval system
