Acidovorax sp. 1608163: EAG14_19895
Help
Entry
EAG14_19895 CDS
T05680
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acio
Acidovorax sp. 1608163
Pathway
acio03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acio00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAG14_19895 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acio03021
]
EAG14_19895 (rpoB)
03400 DNA repair and recombination proteins [BR:
acio03400
]
EAG14_19895 (rpoB)
Enzymes [BR:
acio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAG14_19895 (rpoB)
Transcription machinery [BR:
acio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAG14_19895 (rpoB)
DNA repair and recombination proteins [BR:
acio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAG14_19895 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AYM97962
LinkDB
All DBs
Position
complement(4478819..4482931)
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADKAPQKRTIEGLQAAFDAA
FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTTLLKAIGLNPESILANFFVNDNFRLM
DSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDFL
IGRVVARNIVDADTGEIIAKANEELTEALLKKLRSAGVQDLQVIYTNELDQGAYISQTLR
IDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKIGRD
ESTGPMVLSNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDGKITNEIDYLSAIEEGKYVIAQANAQLDKDGRLTGDLVSAREKGESILCGADRVQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAVDS
GTVVTATRGGVVDYVDATRIVVRVNDDEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
KGDKLVKGDVVADGASTDFGEIAIGQNMLIAFMPWNGYNFEDSILISERVVSEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLTGRVANGGPQKLAKGTKLDKAYLSSVEKFHWFD
IRPAEDEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGIGQRLGDMLQEEAKASELRTFLEEVYNSRGRKEDLSQLSDDELVAMAQNLTSGVPY
ATPVFDGASEEEIKDMLKIAYPDDIAARKGLTPTRTQAYLHDGRTGDRFERPTTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcctataccgaacgcaagcgaattcgcaaaagtttcggcagccgcgacagc
gtgctggaagttccttatctgctgcagatgcagaaggacgcatacaccgccttcctgcag
gcagataaagcacctcaaaagaggaccatagaaggtttgcaggctgcttttgatgcagcc
ttccctatcgtctcgcacaatggttttgtcgagatgaagttcattgagtacaacttggcc
aagcccgcgtttgacgtgcgtgagtgccagactcggggcttgacctttgcttcggccgtg
cgcgccaaagtgcagctgatcatctatgaccgcgagtcttcgacttcgcagtccaaggtg
gtgaaggaagtgaaagagcaagaggtctacatgggcgaagtgcccctgatgactgacaag
ggctcgttcatcatcaacggcactgagcgcgtgatcgtgtctcagctgcatcgctcgcct
ggcgtgttttttgagcacgacaagggcaagacccacagttccggcaagcttctgttctcg
gctcgcatcattccgtaccgcggctcgtggctggatttcgagttcgaccccaaggacatc
ttgtacttccgtgtggaccgccgtcgcaagatgccggttacgacgctgctcaaggccatt
ggcctgaaccctgaatccatcctggcgaacttcttcgtcaatgacaatttccgtctgatg
gacagcggcgcacaaatggaatttgtgtccgagcgtttgcgtggcgaagtggcacgtttc
gacatcaccgacaagtccggcaaggtcgttgtggccaaggacaagcgcgtcacggcccgt
cacacccgtgaactggaacaatcgggtactacgcacatcagcgtgcccgaagacttcctg
attggtcgcgtcgttgcccgcaacatcgttgatgccgataccggcgaaatcatcgccaag
gccaatgaagagttgaccgaagcgttgctcaagaagctgcgctctgccggcgtgcaggac
ctccaggtcatctataccaatgaactggaccaaggcgcctacatctcgcagactctgcgc
atcgatgaaaccgtggacgagtttgccgcccgcgtggccatctaccgcatgatgcgccca
ggcgagccacccaccgaagacgcagtgcaggccctgttccagcgcctgttctacaacccc
gacacgtacgacctgtcgcgcgtgggccgcatgaagttcaacgccaagattggccgcgac
gaatccaccggccccatggtgctgtccaacgaagacatcttggccgtggtcaagatcttg
gtggacctgcgcaacggcaacggcgaagtcgatgacattgatcacttgggcaaccgccgc
gtgcgttgcgtgggcgaactggccgaaaaccagtaccgcacaggcttggcacgtattgag
aaagccgtgaaggagcgtctgggccaggccgagcaagagcctctgatgccccatgacctg
atcaacagcaagccgatttcggctgctctgaaggaattcttcggcgcatctcagctgtcg
cagttcatggaccagaccaacccgctggccgaaatcacgcacaagcgccgtgtgtccgct
ctgggcccaggcggtttgacccgtgagcgcgcaggctttgaagtgcgtgacgtgcacgtg
acccactacggtcgcgtttgcccaatcgaaacgcctgaaggtccaaacattggtctgatc
aactcgctggctttgtacgcccgcttgaacgagtacggcttcatcgagacgccttaccgc
cgcgttgtggatggcaagatcaccaacgaaatcgactacctgtcggccattgaagaaggc
aagtacgtgatcgctcaggcgaacgcgcagctcgacaaggatggtcgcctcaccggtgat
ctggtgtctgctcgtgaaaagggtgaatccatcttgtgcggcgcggaccgagtgcagtac
atggacgtgtcgcccgcgcagatcgtgtcggtggctgcctcgctggtgccattcctggag
cacgatgacgcgaaccgcgcgttgatgggcgccaacatgtcgcgccaggctgtacctgtg
ctgcgtcctgagaaaccactggtgggtaccggtatcgagcgcgtggccgctgtggattcg
ggcactgtggtcacggccacccgtggtggtgtggtggactacgtcgatgcgacccgcatt
gtggtgcgcgtgaacgacgacgaagctgtggccggtgaagtgggtgtggacatctacaac
ctcatcaagtaccagcgttccaaccagaacaccaacatccaccagcgtcccatcgtgaag
aagggtgacaagctggtcaagggtgacgtggtggccgacggcgcatcgacggactttggc
gaaatcgccatcggccagaacatgttgatcgccttcatgccctggaacggctacaacttc
gaagattcgatcctgatctccgagcgtgtggtgtcggaagaccgctacacctcgatccac
atcgaagaactggttgtgatggcccgtgacacgaagctgggtgcggaagaaatcacgcgc
gacattccgaacctgtcggaacagcaactcaaccgtctggacgagtccggcatcatctac
gtgggtgcagaagtgcaacccggcgacacgctggtgggcaaggttacgcccaagggcgag
accaccctcacgcccgaagagaagctgctgcgcgccatcttcggtgagaaggcatctgac
gtgaaggacacctcgctgcgcgtggaccaaggttcctccggcaccgtgatcgatgtgcaa
gtgttcacccgcgaaggcatccagcgcgacaagcgcgcccagcagatcatcgacgatgaa
ctcaagcgcttccgtctggacctgaacgaccagctgcgtatcgtggaagccgacgctttc
gaccgtatcgagaagctgctgaccggccgcgtggccaacggtggcccacaaaagctggcc
aagggcaccaagctcgacaaggcgtacctgtcgtcggtggaaaaattccactggttcgac
atccgtcctgccgaagacgaagtcgccacccagctcgaatccatcaagaacgcgctggag
caaacccgccacagcttcgacctggcttttgaagaaaagcgcaagaagctcacgcaaggt
gacgagctgcctgctggcgtgctgaagatggtcaaggtgtacctggccgtcaagcgccgc
ctgcagcctggcgacaagatggccggccgccacggtaacaagggtgtggtctccaagatc
gtgcccgttgaagacatgccttacatggccgacggcacgcctgccgacatcgttttgaac
ccgctgggcgtgccttcgcggatgaacattggtcaggtgctggaagttcacttgggctgg
gctggcaagggcattggccaacgcctgggcgacatgctgcaggaagaggccaaggcttct
gagctgcgcaccttcctggaagaggtctacaactcccgtggccgcaaggaagacctgtcg
cagctgtctgacgacgagctggtggccatggcgcagaacctgacttcgggcgtgccttac
gcaacccccgtgttcgacggtgcttcggaagaagaaatcaaggacatgctgaagattgca
taccctgatgacatcgccgcacgcaagggcctgacaccgacacgcacgcaggcatacctg
cacgatggccgcacgggtgaccgctttgagcgccccaccaccatcggctacatgcactac
ctgaagctgcaccacttggtggacgacaagatgcacgcccgctcgaccggcccgtactcg
ctcgtcacgcaacagccgctgggcggcaaggcccagttcggtggccagcgtttcggggaa
atggaagtgtgggcgctggaagcttacggcgccgcctacgtgctgcaggagatgctgacc
gtgaagtccgacgacgtggtgggccgtaccaaggtgtacgaatccatcgtcaagggcgaa
cacgccatcgaagccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcg
ctgggcctggacatcgagctggaacgctcctaa
DBGET
integrated database retrieval system
