Arthrobacter citreus: HPK19_18540
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Entry
HPK19_18540 CDS
T06606
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acit
Arthrobacter citreus
Pathway
acit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPK19_18540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acit03021
]
HPK19_18540 (rpoC)
03400 DNA repair and recombination proteins [BR:
acit03400
]
HPK19_18540 (rpoC)
Enzymes [BR:
acit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPK19_18540 (rpoC)
Transcription machinery [BR:
acit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPK19_18540 (rpoC)
DNA repair and recombination proteins [BR:
acit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPK19_18540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QKE74632
LinkDB
All DBs
Position
3894416..3898024
Genome browser
AA seq
1202 aa
AA seq
DB search
MIDVNKFEYMKIGLASPDKIRSWSYGEIKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEAGDTPLEKKQLLSEKEFRAYRERYGQTFQASMGAEAIKKLLS
DINLEKDVDSLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLQMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHPEIWDVLESVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKDINEALIAYQNGYVHLHSRVAVA
ANSLNNETFTEEQNNSLLITTVGKLIFNEILPTSFPYINEPTQSNLEKETPQMYFVAKGA
NIKEIIESREEIAPFKKKILGNIIAEVFKRFKITETSKMLDRMKDLGFRHSTKAGITVGV
SDIIVLPEKQLIIAEAQEKVDKVLKQFRRGLITEDERYDRVIAIWSDAKDVIQGKLMASL
NKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRQDDCGTDRGLHVKAIKEGNEIIEGLY
DRLVGRHLRATIRHPETGELLAQENDLITEDLAREIIDAGIEEVNIRSAFTCNTSHGVCK
KCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIDGIISISTDAKDKQEIIVQGTVESRNYPVPYGARLKVQEGEKIERG
QVMTEGSIDPKELLKVKGTNAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLKKVRVM
DAGETDLLPGTLLELHQFTEANKEALFAGKQPATARPLLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYRRVDLVKDLNESVEINEEVLV
EK
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataaattcgagtatatgaagatcggacttgcatcgcctgacaaaatt
cgctcgtggtcatacggggaaattaaaaaacctgaaacaattaactaccgtacgttaaaa
ccagaaaaagatggacttttttgtgaacgtattttcggtccaacaaaagactgggaatgt
cattgcggtaagtacaaacgtgtacgttataaaggtgtagtttgtgatcgttgtggagtt
gaggttactcgtgcaaaagtacgtcgtgagcgtatgggtcacattgaattagctgcacca
gtttcacatatttggtatttcaaaggtattccaagccgaatgggacttgttttagacatg
tcccctcgtgctctggaagaagtaatctactttgcttcttacgtagtaactgaagcagga
gatactcctttagaaaagaaacaattgctttctgagaaagaattccgtgcttatcgtgag
cgctatggtcaaactttccaagcatctatgggtgcagaagcaattaaaaaattattaagc
gatattaaccttgaaaaagatgttgattctttaaaagaagagttaaaaactgctcaaggt
caacgtcgtacaagagcaattaaacgtttagaagtgttagaagcattccgtaactctggt
aatgagccatcttggatgatcttagatgtgctaccagtaattccacctgaattacgacca
atggttcaattagatggtggtcgttttgcaacatcagatctaaacgatttatatcgtcga
gtaattaaccgtaacaatcgtttaaaacgtttattagaccttggtgcacctagcatcatc
gtacaaaacgaaaaacgtatgcttcaagaagctgttgatgcgttaattgacaatggtcgt
cgtggccgtccagttactggaccaggtaaccgtccattaaaatctctttctcacatgctt
aaaggtaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttcggttatcgttgtaggaccaaacttacagatgtaccaatgtggattaccaaaagaa
atggcgattgaattattcaagccattcgtgatgaaagaattagtagagcgaggattagca
cataacattaagtcagcgaaacgtaaaattgagcgtttacacccagaaatttgggatgta
ttagaatcagttattcgtgagcacccagtgttactgaaccgtgcccctactctacacaga
cttggtatccaagcgttcgaacctacattagtagaaggccgcgcaatccgtctacatcca
cttgtatgtactgcatacaacgccgatttcgatggtgaccaaatggctgttcacgtaccg
ttatcaagtgaagctcaagcagaggctcgtattctaatgcttgcagcacaaaacatcctg
aatccgaaagatggtaaaccagtagttacaccatctcaagatatggtattaggtaactat
tacttaactcttgagcgtgcaggcgctgtcggtgaaggtatggtatttaaagatattaat
gaagcgttaattgcataccaaaatggttatgtacatttacattctcgagttgctgttgcg
gctaattctttaaataacgaaacatttacagaagagcaaaataattcattattaatcaca
acggttggtaagctaatcttcaatgaaatcttacctacgtcgttcccgtatataaatgaa
cctactcaaagtaaccttgagaaggaaacacctcaaatgtatttcgttgctaaaggcgcg
aatattaaagagattattgaaagtagagaagaaattgctcctttcaaaaagaaaatactt
ggaaatatcatcgctgaagtatttaaacgtttcaaaattactgaaacatctaaaatgctt
gaccgcatgaaggatcttggatttagacactctacaaaagctggtattacagttggtgta
tccgatatcatcgtattacctgagaagcaattaattattgctgaagcgcaagaaaaagta
gataaagttctaaaacaattccgtcgtggtttaatcacagaagatgagcgttacgatcgt
gtaatcgcaatttggagtgatgcgaaggatgtaattcaagggaaactgatggcttcccta
aataaacgtaacccaatctttatgatgagtgactctggtgcccgtggtaatgcatcgaac
ttcactcagcttgcaggtatgcgtggtctgatggccaacccggctggacgtattatcgag
ttaccaatcaaatcttcattccgtgaaggtctaacggtacttgaatacttcatctcaaca
catggtgcgcgtaaaggtcttgccgatacagcacttaaaacagccgattcaggttactta
actcgtcgtcttgtagacgttgcacaagatgtaattgttcgtcaagatgattgtggtact
gaccgcggtttacatgtaaaggcgattaaagaaggtaatgaaattattgaaggattgtat
gatcgtctagttggtcgtcatttacgtgcaactatacgccacccagaaacaggtgaatta
cttgctcaagaaaacgatttaattactgaagacttagctcgtgaaattatcgatgcaggt
attgaagaagttaatatccgttctgcatttacatgtaatactagccatggagtatgtaaa
aaatgttatggtcgcaacttagctacaggtgctgaggttgaagttggtgaggcagttggt
attatcgctgcacaatcaatcggtgagccaggtacacagttaacgatgcgtacattccat
actggtggggtagcaggagacgatatcactcaaggtttacctcgtattcaagagctattt
gaagcgcgtaatcctaaaggtcaagcagttatttctgaaattgatggtattatttcaatt
tctactgatgctaaagacaaacaagaaattattgttcaaggcacagtagaatctagaaat
tacccagttccttatggtgctagactaaaagttcaagaaggtgaaaaaattgagcgtggt
caagtaatgactgaaggttcaattgatccgaaagaacttctaaaagtaaaaggtacaaat
gctgttcaagaatacttactacgtgaagtacaaaaagtataccgtatgcaaggggtagaa
attggagacaaacacgtagaggtaatggtacgtcaaatgctgaaaaaagttcgtgtaatg
gatgcgggtgaaactgatttattacctggtacattattagaactacatcagtttactgaa
gcgaataaagaagctttatttgcaggtaaacaaccggctactgcacgcccattattacta
ggtattacaaaagcatcattagaaacagactcattcctatctgctgcatcattccaagaa
acaacgcgtgtattaacagacgctgcgattaaagggaaacgagatgagttgctaggatta
aaagagaatgttattataggtaagttggttccagctggtactggtatgaacagataccgc
agagtagatcttgttaaagatttaaatgaatcagttgaaataaacgaagaagtgttagtt
gaaaaataa
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