Acinetobacter sp. Tol 5: TOL5_02640
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Entry
TOL5_02640 CDS
T11084
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aciz Acinetobacter sp. Tol 5
Pathway
aciz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aciz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TOL5_02640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciz03021
]
TOL5_02640 (rpoB)
03400 DNA repair and recombination proteins [BR:
aciz03400
]
TOL5_02640 (rpoB)
Enzymes [BR:
aciz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TOL5_02640 (rpoB)
Transcription machinery [BR:
aciz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TOL5_02640 (rpoB)
DNA repair and recombination proteins [BR:
aciz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TOL5_02640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
BCX72064
LinkDB
All DBs
Position
296622..300710
Genome browser
AA seq
1362 aa
AA seq
DB search
MAYSYTEKKRIRKNFGKLPQVMHAPYLLAIQVDSYRTFLQDGKTPKNREDIGLQAAFRSV
FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTFAAPMRVKIRLIIKDRETKSIKDVR
EQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
YRGSWLDFEFDAKDLVFVRIDRRRKLLATVILRALNYSNEQILNMFYEKVPVYLDMGSYQ
IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT
AEDITLRDGEVIAANTILSHEVLVKIAEGGVKQFNILFTNDIDRGSFVADTLRADTTTGR
EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSTERYDLSPVGRMKFNRRLGRPYEVGTDQ
KSREVEGILSNDDIIDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
ERAVKERLNQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANNFGFLETPY
RKVVDGRVTDDVEYLSAIEEVGTVIAQADSGVDKDGHLTEEFVSVRHQGEFVRMPPEKVT
HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVAHD
SGVCVIAKRGGRIEFVDASRVVIRVNEDEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV
SLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVSAGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKAADVKDSSLRVSSSVKGTVIDVQVFTRDGIEKDERAQAIEKA
QLDAYRKDLKEEFKIFEEAARERIVRLLKGQESNGGGTTKRGDKLTEDVLSNLELVDLLE
VQPADEGIAERLTQIQVFLKEKSHEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRR
IQPGDKMAGRHGNKGVVSNILPVEDMPHDIHGVPVDVVLNPLGVPSRMNVGQILETHLGM
AAKGLGDKIDKMMKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILVLSGNLRKGVP
LATPVFDGAEEGQIKELLELGGISRTGQTVLYDGRTGERFDRPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcatactcatataccgaaaagaaacggatccgtaagaattttggtaaattgccccaa
gtcatgcatgctccgtacttgctcgcgattcaagtcgactcgtacagaacattcttgcaa
gatggcaaaactccaaaaaatcgcgaagatatcggtctccaagctgcatttcgttcagtt
tttcctattgaaagttattcgggcaatgctgctttagaattcgttgagtatagtcttggt
aaaccagagtttgatgttcgcgagtgtattcttcgcggttcaacctttgcggcaccaatg
cgcgttaaaattcgtttgatcatcaaagatcgtgaaacgaaatctatcaaagacgtacgt
gaacaagaagtgtacatgggtgaaatgccactcatgactgagaatggtacttttgtaatc
aatggtactgagcgtgtaatcgtatctcaattacaccgttctccaggcgtcttctttgat
cacgataagggtaaaactcattcaagtggtaaagtgctttattcagcacgtatcattcct
taccgtgggtcatggttggattttgaatttgatgctaaagacttagtatttgttcgtatt
gaccgtcgtcgtaaattgttggcgactgttattctacgtgcattgaactatagcaatgaa
caaattctcaatatgttctatgagaaagtacctgtatatcttgatatgggtagctatcag
attgaccttgttccagaacgccttcgcggtgaaatggcgcagttcgatattgcagacaat
gacggtaaagtgattgttgaacaaggtaaacgtatcaatgcacgtcatgtgcgtcaaatg
gaagctgcgggtttaactaaactttctgttcctgatgaatacttgtatgagcgtattaca
gctgaagatattactttacgtgatggtgaagtgattgctgccaataccattttaagccat
gaagtattggttaaaatcgctgaaggtggtgttaaacaatttaacatcttgttcaccaat
gatatcgatcgtggttcgtttgttgcagatacactacgtgcagatacgacaacaggtcgt
gaagaagcacttgtagaaatctacaaagtcatgcgtccaggtgagccaccaacaaaagaa
gcggctgaaaacttattcaataacttattcttctctacagagcgttatgacttgtctcct
gtaggtcgtatgaagtttaaccgtcgtttgggtcgtccttatgaagtcggtacagatcag
aagtctcgtgaagtagaaggtattctttctaacgatgacatcattgatgtattgaaaaca
ttggtagaaatccgtaacggtaaaggtgaagtcgacgatatcgatcacttaggtaaccgt
cgtgtacgttctgttggtgaaatgacagaaaaccaattccgtgttggtctagttcgtgtt
gaacgtgctgtaaaagagcgtttaaaccaagctgaaacagataacttgtctccacaagat
ttgatcaatgcgaaaccagttgcagctgcaatcaaagaattctttggttcaagccaattg
tctcagtttatggatcaaaacaatccattgtctgaaattacgcacaaacgtcgtgtttca
gcgcttggtcctggtggtttgacacgtgaacgcgcaggctttgaggtacgtgacgtacat
caaactcactatggtcgtgtatgtccaattgagacacctgaaggtccaaacattggtttg
atcaactcactttctgtatatgcaaaagccaacaacttcggtttcttggaaactccatac
cgtaaagtggttgatggtcgtgtaacggatgatgttgagtatttatctgcgattgaagaa
gtaggcactgtaattgcacaagccgattctggtgtagataaagacggtcacttgactgaa
gaattcgtttctgtacgtcatcaaggtgaattcgttcgtatgcctcctgaaaaagtgacg
catatggatgtatctgctcagcaggttgtttctgttgctgcatcacttattccattcctt
gaacacgatgatgcgaaccgtgcattaatgggttcaaacatgcaacgtcaggctgttcct
acactgcttgctgacaagccacttgttggtacaggtatggaagcaaacgtagcgcatgac
tctggtgtgtgtgtaatcgcaaaacgtggcggacgtattgagttcgttgatgcttctcgt
gttgttattcgtgtaaacgaagatgaaatgatcgcgggtgaagcaggtgtagatatctac
aacttgatcaaatacacacgttcaaaccaaaacacttgtatcaaccaaaaagttcttgtg
agcttgggcgataaagtaggtcgtggtgacgttcttgctgatggtccatcgactgacggt
ggtgagttagcgcttggtcaaaacatgcgtgtcgcgttcatgacgtggaacggttataac
tacgaagactcgatcttattatctgagcgtgtacttcaagaagaccgtttgacttcgatt
cacatccaagagttgtcatgtgtagcgcgtgataccaagttaggtgcagaagaaattact
gcagatattcctaacgtgggtgaagcagctttatctaaacttgatgaatcaggtattgtt
tatatcggtgctgaagtttcagcaggtgacatccttgttggtaaggtaacgcctaaaggt
gaaacacaattaacacctgaagaaaaattacttcgtgcaattttcggtgaaaaagctgcg
gatgtaaaagactcttctttacgtgtttcttcaagcgtaaaaggtacagtgattgacgtt
caagtgtttacacgtgacggtatcgagaaagatgagcgtgctcaagcaattgaaaaagcg
caacttgatgcttaccgtaaagacttgaaagaagaattcaaaatcttcgaagaagctgct
cgtgaacgtattgtgcgtttattgaaaggtcaagagtcaaatggtggtggtacaacgaaa
cgtggtgacaagctaactgaagacgtattgtctaacttagagcttgttgatctgttagaa
gttcaaccagcagacgaaggtattgctgagcgtttaacgcagattcaagtgttcttgaaa
gagaagagccacgagatcgatgagaagtttgctgagaaaaaacgtaaactttcaacgggt
gatgaactgacaactggtgtgttgaaagttgttaaagtttatcttgctgttaaacgtcgt
atccagcctggtgataagatggcgggtcgtcacggtaacaagggtgttgtatcaaacatc
ttaccagttgaagacatgccgcatgacatccatggtgttccagtggatgtggtacttaac
ccactcggtgtaccatcacgtatgaacgtgggtcagattcttgaaactcacttgggtatg
gcagcgaaaggtcttggcgataagatcgacaagatgatgaaagagcaacgtactgttctt
gaacttcgtgaattcttagacaagatttataacaaagttggtggcgagcaagaagatctt
gatagcttgactgatgaagaaatcttggtgttatcaggtaacttgcgtaaaggtgttcct
ttagctacaccagtatttgatggtgcagaagaaggacaaatcaaagagttacttgaactt
ggtggtatctcacgtacaggtcaaacagtattgtatgatggacgtacaggtgagcgtttt
gaccgcccagtaacagtaggttatatgtacatgctcaagttgaaccacttggttgacgac
aaaatgcatgcacgttctactggttcttactcactcgtgactcaacaaccgcttggtggt
aaagcacaattcggtggtcagcgtttcggtgagatggaagtttgggcacttgaggcttat
ggtgctgcttatacacttcaagaaatgttaactgtgaaatcggatgacgttgaaggtcgt
actcgcatctataagaacattgtagatggtaaccattatatggatccgggtatgcctgaa
tcgttcaacgtattgaccaaagagatccgttctttaggtatcaacattgaactgaaaaat
ggtgactaa
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