Alterisphingorhabdus coralli: RB602_04225
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Entry
RB602_04225 CDS
T10589
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acoa Alterisphingorhabdus coralli
Pathway
acoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RB602_04225 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoa03021
]
RB602_04225 (rpoB)
03400 DNA repair and recombination proteins [BR:
acoa03400
]
RB602_04225 (rpoB)
Enzymes [BR:
acoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RB602_04225 (rpoB)
Transcription machinery [BR:
acoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RB602_04225 (rpoB)
DNA repair and recombination proteins [BR:
acoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RB602_04225 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5818
B
MYO10_CC
Motif
Other DBs
NCBI-ProteinID:
WOE75929
UniProt:
A0AA97F7P2
LinkDB
All DBs
Position
917187..921599
Genome browser
AA seq
1470 aa
AA seq
DB search
MASKAKNPAERLIPTAKKRIRKIFGDIHEVIRMPNLIEVQRESYEQFLRSDPSIGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELEDPKYDMEECRQRGITYAAPMKVTLRLIVFEVDT
ETESRSVLDIKEQDVYMGDMPLMTHNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHAS
GKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLFALGDAVLKLTDQKGKF
KVGDEVRVSGVRKPLEVVAVEGDLLTVKDPVGAIEIGGTVDIPESSNSATISRIVKQGMD
QEDILHYFYDTVTYERGSKKAGDGWKIPFAAEAWRGQKPTFDIVDAKSGEVVFAAGQKIT
PRAANKAEKDGLKELLIPTEEIYGRYSARDLINEKTGEIYIEAGDEVSVENLEKLEAAGI
ESLELLDIDHVTTGAWIRNTMKADKSENRDMGLDAIYRVMRPGEPPTRETAESLFEGLFF
DGERYDLSAVGRVKLNMRLDLDAPDTHTTLRKEDILAVVKTLVDLKDGKGEVDDIDNLGN
RRVRSVGELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQ
LSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIG
LINSLASFSRVNKYGFIETPYRKVVDGKVTSEVVYLSAMEEQKHTVAQANADLNDDGSFA
DEFVSAREAGEFLIAPRDAITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAV
PLVKAEAPFVGTGMEATVASDSGAAIAAKRAGIVDQVDATRIVIRATGAVDAGKSGVDIY
RLQKFQRSNQNTCINQRPLVKVGDVIEEGDILADGPSTDMGELALGKNSLVAFMPWNGYN
YEDSILISERIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIV
YIGAEVHPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEV
RVFNRHGIDKDDRAMAIEREEIERLAKDREDERSILNRATYNRLRDMLVGQTATGAPKGF
KKGSEITADNLEEVEKHEWWKFAVADDARQADLEAVKQQYDDAVTLINEKFEDRRDKLER
GDELAPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVL
NPLGVPSRMNVGQIFETHLGWAARGLGQQVTQALEDWRHANPDPEAASPPDAVKERLKIV
YGDDYHDEIEKRSDAEIVELAGYLKNGVPMGTPVFDGAREGDVSTMLERADLDASGQVDL
FDGRTGDRFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYESIVKGDDSFETGIPESFNVLVKEMRS
LGLNVELKSFDDAEDDEDGDSAGELPEAAE
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtaaggcgaagaatcccgcggaacggcttatcccgaccgcgaaaaagcgtatc
cgcaagattttcggtgacatccacgaagtgatccgcatgccgaacctgatcgaggttcag
cgcgagagctatgagcagtttctgcgctccgatccttcaatcggctatgtctccggcctg
gaaaaaacgctgcgcagcgttttcccgatccgcgatttcgccggcaccgccgagctcgat
ttcgtgcattatgagctcgaagatccgaaatatgacatggaagaatgtcgccagcgcggc
atcacctatgccgccccgatgaaggtaacgttgcgccttatcgtgttcgaggtcgacacc
gaaaccgaaagccgctccgtgctcgatatcaaggagcaggacgtttatatgggcgacatg
ccgctgatgacgcataatggcacgttcatcgtcaacggcaccgagcgcgttattgtcagc
cagatgcaccgttcgcctggcgtgctgtttgatcatgaccgcggcaagacccatgcttcg
ggcaagttcttgttcgccgcgcgcgtcattccttatcgtggttcctggctcgactttgag
tttgatgccaaggatatcgtcaatgtccgtatcgaccgtaagcgtaagctgccggttacc
gcgctgctgttcgcgctcggcgatgctgtcctcaagctcaccgaccagaagggcaagttc
aaggttggtgacgaagttcgcgtttccggcgtccgcaagccgctcgaagtggttgcggtt
gaaggcgatctgctgaccgtgaaagaccctgttggcgccatcgaaattggcggcaccgtc
gatattccggaaagcagcaacagcgcgaccatctcgcgcatcgtcaagcagggcatggat
caggaggatatcctccactatttctatgacactgtgacctatgagcgcggctcgaaaaag
gcaggcgatggctggaaaatcccgttcgctgccgaagcatggcgcggccagaagccgact
ttcgacattgttgatgccaagtccggcgaagttgtcttcgcggctggccagaagatcacc
ccgcgcgctgccaacaaggcggagaaggacggccttaaagagctgttgatcccgaccgaa
gagatttatggccgctattccgcgcgtgacctgatcaacgaaaagaccggcgagatttat
attgaggcgggtgacgaagtcagcgtcgaaaatctcgaaaagctggaagcggcgggcatt
gaaagcctcgagcttctcgacattgaccatgtcaccaccggcgcatggatccgcaacacc
atgaaagctgacaagtcggaaaatcgtgatatgggccttgacgcgatctaccgcgtgatg
cgccccggcgaaccgccgacgcgcgaaactgcggaatcgctgtttgaaggcctgttcttc
gacggtgagcgttatgatctgtcggctgttggccgcgtcaaactcaatatgcgcctcgat
cttgatgcgccggatacccacactacgctgcgtaaggaagatatccttgccgtggtcaag
acgctggtcgatctcaaggacggcaagggtgaggttgacgatatcgataacctcggcaac
cgccgtgtccgctcggtcggtgagctgctggaaaaccagtatcgcgttggcctgctgcgc
atggagcgtgcggtcaaggagcgtatgagctcggttgatgtgtccaccgtgatgccgaac
gacctgatcaacgccaagcctgcagttgccgcggtgcgtgagttcttcggctcttcgcag
ctgtcgcaatttatggaccagaccaacccgctgtcggaagtcacgcacaagcgccgcgtt
tcggccctcggtcccggcggtctgacgcgtgaacgtgccggctttgaagtccgcgacgtt
cacccgacgcactatggccgtatgtgcccgattgaaacgcctgaaggcccgaatatcggt
ctgatcaactcgctggcgtcgttcagccgggtcaacaaatacggctttatcgaaacgccg
taccgcaaggttgtcgatggcaaggtcaccagcgaggtggtctatctctcggcgatggaa
gagcagaaacacacggttgcgcaggccaatgcggacctgaatgatgatggctcttttgcc
gatgagtttgtctcggcacgtgaagccggcgaattcctgatcgcgccgcgcgatgccatc
accctgatggacgtttcgccgaaacagctggtttcggttgcggcctcgctcattccgttt
ctggaaaatgatgacgccaaccgcgcattgatgggatcgaacatgcaacgtcaggcggtg
ccgctggtgaaagccgaagcgccgttcgtcggcaccggtatggaagccactgtcgccagc
gactctggtgcggcgattgcggccaagcgtgccggtattgtcgaccaggtcgatgcaacg
cgtatcgtgatccgtgccaccggcgcggtcgatgccggcaagtcgggcgtcgatatctac
cgtctgcagaaattccagcgttccaaccagaacacctgcatcaaccagcgcccgctggtg
aaggtgggtgatgtgatcgaggaaggcgatattcttgctgacggtccatccaccgatatg
ggcgaactggcgctcggcaagaacagcctcgtcgcgttcatgccgtggaatggctataac
tatgaggactcgatcctgatctccgagcggattgtgaaggatgacgtcttcacctcgatc
catatcgaggaatttgaggtcatggcccgcgacaccaagctgggcccagaagacatcacc
cgcgacattccgaatgtcggcgaggaagcgctgcgcaacctcgacgaggcgggcattgtc
tatatcggtgccgaagtgcatccgggtgatattcttgtcggcaagatcacgccaaagggc
gaaagcccgatgacgcccgaagagaagctgctgcgcgctatctttggtgaaaaggcttcg
gacgttcgcgatacctcgctgcgtctgcctccgggtgttgccggtaccgtggttgaggtc
cgcgtgttcaaccgtcacggcatcgacaaggatgaccgcgcaatggcgattgagcgtgaa
gaaatcgagcgtctcgccaaggaccgcgaggacgaacgctcgatcctcaaccgtgcgacc
tataaccgtctgcgcgacatgctggtcggtcagaccgccaccggcgcgccaaagggcttc
aagaagggcagcgagatcaccgctgataacctcgaagaagtcgaaaagcatgaatggtgg
aagttcgcggttgccgatgatgcgcgtcaggcagacttggaagccgtcaagcagcaatat
gacgatgccgtcacgctgattaacgagaagttcgaggaccgccgtgacaagctggagcgt
ggtgacgagctggctccgggcgtgctgaaaatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagcctggcgacaaaatggccggtcgtcacggcaacaagggtgtgatttcgcgc
atcctgccacaggaagacatgccgttccttgaggatggcacgccggtggacatcgtgctc
aacccactgggtgttccgagccgtatgaatgttggtcaaatcttcgagacccatctcggc
tgggccgcgcgtggtctcggccagcaggtgacccaggcgctcgaagactggcgccatgcc
aaccctgatccagaagcggcgagcccgcccgatgcggtgaaggagcggctcaagatcgtc
tatggtgatgactatcatgacgagattgagaagcgttcggacgctgagattgtcgagctt
gccggctacctcaaaaacggtgtccccatgggcacgccggtatttgacggtgcacgcgag
ggcgatgtctcgaccatgctggaacgtgccgatctcgatgcgtcgggacaggttgatctg
ttcgatggccgtaccggtgatcgcttcgatcgtaaggtgaccgtgggctatatctatatg
ctcaagctgcaccatctggttgatgacaagatccacgcccgttcgattggcccctacagc
ctcgtcacccagcagccgctgggcggtaaggcgcaatttggcggccagcgcttcggtgag
atggaagtctgggcgttgcaggcctatggcgccgcctatacgctgcaggaaatgctgacg
gtgaaatcggacgatgttgtcggccgcaccaaggtttatgagtcgatcgtcaagggtgac
gacagctttgaaaccggcattcccgaaagctttaacgttctggtcaaggagatgcgctcg
ctcggtctcaatgtcgaactcaaatcatttgatgatgccgaggacgacgaagatggcgac
agcgcaggcgaattgcccgaggctgcggaataa
DBGET
integrated database retrieval system
