Atta colombica: 108684385
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Entry
108684385 CDS
T11098
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
acoc Atta colombica
Pathway
acoc03013
Nucleocytoplasmic transport
acoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108684385
09122 Translation
03013 Nucleocytoplasmic transport
108684385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684385
03041 Spliceosome [BR:
acoc03041
]
108684385
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108684385
Spliceosome [BR:
acoc03041
]
Complex C
Other components
EJC/TREX
108684385
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108684385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Carbpep_Y_N
Motif
Other DBs
NCBI-GeneID:
108684385
NCBI-ProteinID:
XP_018044155
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MAMFEVLRKDYSDYLQQYFKLSDVSLFQKKCIERCANDSDRKAAIDQALRDTLLVVLTEN
ASGNVRSLESYITFCIELCRKDLATASMPVMLLGDIFDSMTLDRCEQLFTFVENNVTVWK
EELFFTACKNNLLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLE
NQTEFGLEKAEEDDLEQITKDDDKSESKIPIDYNLYRKFWALQDFFRNPNQCYNKMHWKV
FSAHASNVLSAFASFKLEEQRSYPSTCIKMDTSMEGSHKETHYFAKYLTNQKLLELQLSD
SNFRRYVLLQFLILFQYLNSTVKFKAFLASGYETSETHELKPDQVEWVKTITEQVYTLLT
ETPPDGPTFAETVKNILKREEHWNTWKNEGCPPFKRPASDVNDEEPRKSRRPKRRIGDVI
RDAQTVGKYHMGNPELTKLWNLCPNNLEACKSKDRDFLPSLETYFEDAIMELDPAAMVDD
KYKKVNDGNFGWRALRLLARRSPHFFVHGNYPINKLPEYLETMIKKIAKDRPQTQSDTKL
ETEETPPSESTDQEFNEDVLKQESEQVDAESADVKARKLNKVTPEMVAKLSESLKNDWKK
LAIKFGYTNDEIAFFQSKTTPYEQCKTMLEIWAEEDEDASVENLIYILEGLKYTEALAVL
RS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgttcgaagtgttaaggaaagattatagcgattatttgcagcaatatttcaag
ctgtcggacgtctcgttatttcaaaaaaagtgcattgaacgttgtgcgaatgacagtgac
agaaaagcggcaatcgatcaggcgcttcgagataccttgctagtcgtactgacggaaaat
gcttcgggtaacgtgcgttccctcgaatcgtatatcacgttctgtatagagttatgcaga
aaggatcttgcgacagcgagtatgccagtgatgctactgggtgatatctttgattcaatg
acgctcgatagatgcgaacaattatttacttttgtggagaataatgtcactgtatggaag
gaagaattatttttcactgcctgtaaaaataatttgttgagaatgtgcaacgatctccta
aggagattgtcacgttcacaacaaactgtattttgtggtagaattctgctgttcttagca
aagttctttcctttctctgagagatctggcttgaatattgttagcgaatttaatctggaa
aatcagacagaatttggcttggagaaagcagaggaagatgatttagagcagataactaag
gatgacgacaagtcagaaagcaagataccaattgattataatttgtatagaaagttttgg
gcactacaagatttcttcagaaatccgaatcagtgttataataaaatgcactggaaggtc
ttttcagctcatgcgtctaatgtattatcagcatttgcttcttttaaattggaggagcaa
cgtagttatccttctacatgcatcaagatggatacttctatggaaggctcccacaaagag
acgcattattttgctaaatacttgactaatcagaaattactggagttacaactgtcagac
tccaatttcagacgatatgtattgctgcaatttctcattcttttccagtatctgaatagc
actgtaaaattcaaggccttccttgccagtggctatgagacaagtgagacacacgaactc
aagccggatcaagtggaatgggtgaagactattactgaacaagtttatactctactgact
gaaacaccgcctgacggccccacatttgcggaaactgtgaagaacatcttgaaacgtgaa
gagcattggaatacatggaagaatgaaggatgtccaccattcaaacgaccagcatcagat
gtcaatgatgaagagccacggaaatcaagaagaccgaaacgacgtattggtgatgtaatt
agagatgcacaaacggttggcaaatatcacatgggaaatccagaacttactaaattatgg
aatttatgtccgaacaatctcgaggcatgcaaatctaaggatagagattttctgccatct
ttagaaacgtattttgaagatgccataatggaattggatcctgctgcaatggtcgatgat
aaatacaagaaggtgaacgatggtaattttggttggagagcgttaagactgttagcgaga
cgaagtccgcatttctttgttcatggaaattatcctataaataaattgcctgaatatctt
gagacgatgattaagaagattgctaaagatcgtccacagacacagtctgatacgaaattg
gaaactgaggagacaccgccatcagaatctactgatcaagaattcaacgaagacgtcttg
aaacaggaaagtgagcaggttgatgctgaaagcgctgatgtaaaagccagaaaattgaac
aaagtcacaccggaaatggtggcaaaattatcggaaagtttaaaaaatgattggaaaaaa
ttagcgataaaatttggttatacaaatgatgagattgcttttttccaaagcaaaacaacg
ccatacgaacaatgtaaaactatgcttgagatatgggcggaagaggatgaagatgcatca
gttgaaaatttaatttatattttagaaggtttaaaatatacagaagcattagccgttcta
agatcttaa
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