Atta colombica: 108685116
Help
Entry
108685116 CDS
T11098
Name
(RefSeq) sodium channel protein para isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
acoc04040
]
108685116
Ion channels [BR:
acoc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108685116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
EF-hand_6
SieB
Motif
Other DBs
NCBI-GeneID:
108685116
NCBI-ProteinID:
XP_018045261
LinkDB
All DBs
Position
Unknown
AA seq
2040 aa
AA seq
DB search
MSEDSDSISEEERSLFRPFTRESLAAIEARIAEEEARQKELQQRRAEGEGGYGRKKKKKE
IRYDDEDEDEGPQPDPIFEQGASIPVRLHNEFPPELASTPLEDIDNFYHNQRTFVVISRG
KDIFRFSATDAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMPTTPTIEST
EVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRT
FRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKC
IKNFPEDGSWGNLTDESWARFNNNDTNWYVDEAKNIPLCGNSSGAGQCLPGYTCLQGFGA
NPNYGYTSFDTFGWALLSAFRLMTQDYWENLYQLVLRSAGPWHMLFFIVIIFLGSFYLVN
LILAIVAMSYDELQKKAEEEEAAEEEAMREAQEAAIAKENKLAAREAAAAAAAAAVDAAA
EAADQIVKSPSDFSCHSYELFVGQEKGNDDNNKEKMSIRSIESIGDQRHVKQINNHSAAN
KVRKVSAASLSLPGSPFNLRRSSRGSHQFTIRNGRGRCFVPPGGDRKPLVLSTYLDAQEH
LPYADDSNAVTPMSEENGTIVVPVYYANLGSRHSSYTSHASRLSYTSHGDLAFSGIRGID
SIGKQITKQEQILRNRNNKQTPANGHVTDANQKNYHFVNPMGKNKPQDNPFIELPAQQHT
VVDMKDVMVLNDIIEQAAGRRSKTPEQAVSTYYFPTDDDEEPTFKDKLVAGMFRCIDIFC
VWDCCWLWLEFQKYVSLLVFDPFVELFITLCIVVNTLFMALDHHDMDKDMERVLKSGNYF
FTATFGIEATMKLIAMSPKYYFQEGWNIFDFIIVALSLVELGLEGVQGLSVLRSFRLLRV
FKLAKSWPTLNLLISIMGRTVGALGNLTFVLCIIIFIFAVMGMQLFGKNYVDHVDYFPDG
DLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMLVGDVSCIPFFLATVVIGNLVVLNLFL
ALLLSNFGSSNLSAPTADNDTNKIAEAIDRIARFIKWIKRNILAFAKLMRAKLTNQISDQ
APDGIDRDGDLDLADGELDAYRDKKSAKELNQLEVAIGDGMEFTIHGDLKNKLKRGKLCM
NNTKVIANSINHHDYRLDNDYINQNEDDTISNKSYGSHKNRAFKDESHKGSMDSLNGEEK
KDASKEDLEQEEDLEDEGEEEEDRLDGEIIQVDEDPIQSSYPADCCPENCYKKFPFLAGD
DDAPFWQGWANLRFKTFRLIENKYFETAVITMILLSSLALALEDVHLQQRPVLQDVLYYM
DRIFTVIFFLEMLIKWLALGFKKYFTNAWCWLDFIIVMVSLINFVASLCGAGGIQAFKTM
RTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYYK
CVDANKTTLSYEIIPDRNACNTENYTWENSPMNFDHVGKAYLCLFQVATFKGWIQIMNDA
IDSREIDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFM
TEDQKKYYNAMKKMGNKKPLKAIPRPRWRPQAIVFEIVTDKKFDMIIMLFIGLNMLTMTM
DHYQQSETFGNVLDYLNMIFIVIFTSECLMKIFALRYHYFKEPWNLFDFVVVILSILGLV
LSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLV
MFIFAIFGMSFFMHVKDKSGLDDVYNFKTFGQSMILLFQMSTSAGWDSVLDGIINEEDCQ
EPNNEIGYPGNCGSSTIGIAYLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDD
YDMYYEIWQQFDPDGTQYIRYDQLSDFLDVLEPPLQIHKPNKYKIVSMDIPICKGDLMFC
VDILDALTKDFFARKGNPIEETGDLGEVQARPDEAGYEPVSSTLWRQREEYCARLIQNAW
RKHKQQRLGGPSEESDDPDTDLCVRQTKVLVESDGYVTKNGHRVVIHSRSPSVTSRTADV
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagattctgactctatatcagaggaagaaagaagtttgttccgtccgttcacg
cgggagtccctggcagcgatcgaggctcgcattgccgaggaagaggccaggcagaaagag
cttcagcagagaagagcggaaggcgagggaggttatggacggaagaaaaagaaaaaagaa
atacgatatgacgacgaggacgaggacgaaggtcctcagccggatcccatatttgagcag
ggagcgtcgatcccggtccgactgcacaacgaatttccacccgagttggcctccacacct
ctcgaggatattgataacttctaccacaatcaaaggaccttcgtcgtcattagcagggga
aaggatatattcagattctcagcgacggacgcgatgtggatgctcgacccattcaaccct
atacggcgtgtggccatatatatattggttcacccgcttttctcccttttcatcatcact
acaatattggttaactgtatactcatgatcatgcccaccacgcccaccatcgagtccacc
gaagtgatatttacgggcatctacacatttgagtccgccgttaaggtgatggcgaggggt
ttcattctgcagccttttacctatcttagagatgcatggaattggctcgacttcgtagtt
atagctttagcttatgtgacgatgggcatagatctaggcaaccttgccgctctcaggaca
tttcgagtcctccgagccttgaagactgtcgctattgtaccaggtctgaaaaccattgtc
ggcgctgtgatagaatccgtgaagaatctgcgcgatgtgataatcctgacgatgttctcc
ctctccgtctttgcgctgatgggccttcagatttacatgggggttctcacgcaaaaatgt
ataaagaactttcctgaggatggctcctggggtaatctcaccgatgagagttgggcgcga
ttcaataataacgacactaattggtacgttgacgaagcgaaaaatatacccttatgcgga
aattcatcgggagcggggcagtgccttcccggatacacgtgtttacaaggattcggcgct
aatccgaattacggttacacgagcttcgacacttttggttgggcattgctctccgccttt
cgtctcatgactcaggattattgggagaatctgtatcaattggtgctaagatcggccgga
ccatggcacatgctcttcttcatcgtgattatcttcctcggatccttctatctcgtcaac
ttgatcctcgctattgtcgcgatgtcgtacgacgagttgcagaagaaggccgaagaggaa
gaagctgccgaggaagaagctatgagggaagctcaggaagctgcaatagcaaaggagaac
aaactcgcggcgcgggaagctgcggccgctgcagcagccgctgcggtagacgccgccgcg
gaagctgcggatcagatcgtcaaatccccgtcggatttctcgtgtcacagttacgagctg
ttcgtcggtcaggaaaaggggaatgatgacaacaataaggagaagatgagcatacgttcg
atcgagtccatcggcgatcagaggcacgtcaagcagatcaacaaccacagcgctgccaat
aaagtgcggaaagtcagcgccgcgagcctgagcctacccggctcaccgttcaatctgcgc
cgcagcagccgtggcagccatcagttcacgatacgcaatggccgtggccgatgtttcgta
ccaccgggaggcgaccggaagcccctcgtgctgtcgacatacttggacgcccaggaacac
ttgccctatgccgacgactcgaacgcggttacaccgatgtccgaggaaaacggcacgatc
gtggtgccggtgtactatgcgaatctcggctcgcgtcactcatcctacacctcacacgcc
tcgcggctctcctacacatctcacggtgacttggccttctctggtattcgtggcatcgat
agcatcggcaagcagatcactaagcaagaacagatcctcaggaatagaaacaacaaacaa
acaccggccaatggccatgttacggatgccaatcagaaaaattatcatttcgtaaatccc
atgggtaagaacaagccacaagacaatccgtttatcgagttgccggcgcaacagcatacc
gtagtcgacatgaaagatgtaatggtgctgaacgacataatcgagcaagctgccggtcgc
cggagtaagacgccagaacaagcagtttcgacctattactttccgacagacgacgatgaa
gaacctacattcaaggacaagttagtggccggaatgtttcgttgtatcgacatcttttgc
gtctgggattgctgttggctttggctcgagtttcaaaagtacgtgtccctgttggtcttt
gatccattcgtagagctcttcatcacactctgtatcgtcgttaatacgctgttcatggca
ttggatcatcacgacatggacaaagatatggaaagagtactcaaatctggtaattacttc
ttcacggcgacattcggcattgaagcgactatgaagttaatagcgatgagcccaaaatat
tattttcaagagggctggaatattttcgattttatcatcgtcgctctttcgcttgtggag
ttgggtctcgaaggtgtgcaaggtctgtcggtcttacgatctttcagattgttaagagtg
ttcaagctagctaaatcgtggcctacgttgaatctactgatttccatcatgggcagaacg
gtgggcgcgttgggtaatctaacgttcgtattgtgcatcatcatcttcatcttcgccgtg
atgggtatgcagctcttcggcaaaaattacgttgatcacgtcgattacttcccggacggt
gatctacccagatggaacttcactgacttcatgcactcgtttatgatcgttttccgagtg
ttgtgcggagaatggatcgaatctatgtgggattgcatgttggtcggtgatgtctcctgt
atacccttcttcttagctaccgtcgtcattggtaacttggtcgtcctgaatctcttctta
gctctgttgctcagcaacttcggctcatcgaacctgtcggccccgactgcggacaacgac
acgaacaagattgcggaggcgatcgatcgaatagcgcgtttcattaagtggatcaaacga
aatatccttgcttttgctaagttgatgcgagccaaactcaccaatcagatatccgatcag
gcgccagatgggattgatcgcgatggggacctagatcttgcagatggagagttggacgca
tacagagacaaaaagagcgccaaagagcttaatcagcttgaagttgccattggtgacgga
atggaatttactattcatggagatctgaagaataaactgaagaggggtaagctgtgtatg
aacaatacgaaagttatcgcgaattcaataaatcaccacgattatagactggacaacgat
tatattaatcagaacgaagatgacactatcagtaacaaatcatatggcagtcacaaaaat
cgcgcgtttaaagacgaaagtcacaaaggcagtatggattcgttaaatggcgaagagaag
aaagatgcgagcaaagaagatttagaacaggaagaagatttagaagacgagggtgaagaa
gaggaagatcgactcgatggcgagataatacaagtggacgaggatcctattcaatcaagt
tacccagctgattgctgtccggaaaattgctacaaaaagtttccatttctggccggcgat
gatgacgctccattttggcaaggttgggcaaacctgagatttaagaccttccggttgatc
gagaacaaatatttcgagactgccgtcattaccatgatccttctaagtagcttggccttg
gctttggaggacgttcatcttcaacaacgacctgtcctgcaggacgtactgtattatatg
gaccgaatatttactgtgatcttcttcctcgagatgttgatcaaatggctggctctaggt
tttaagaagtacttcacgaatgcctggtgctggctcgattttatcatcgtcatggtatcg
ctcattaacttcgtagcgtcgctctgtggcgctggcgggattcaagccttcaaaacaatg
cggaccctaagggccctaaggccgctcagggcgatgtctagaatgcaggggatgcgggta
gtcgttaatgctttggtccaagccattccatccatcttcaacgtattgctggtatgcctt
attttctggcttatattcgctatcatgggggtgcagctgtttgctggcaaatattataag
tgtgtcgacgcgaacaagacgacgctcagctacgagataataccggatcgtaacgcttgc
aacaccgagaattatacgtgggaaaattcgccgatgaatttcgatcacgtcgggaaagcg
tatctgtgcctattccaagtggcgacttttaaaggatggattcaaattatgaacgatgcg
atcgactctagagagatcgataagcaaccgattcgcgaaacgaacatttacatgtatctc
tacttcgtgtttttcattatatttggatcgttttttaccctcaatctgtttatcggagtg
atcatcgacaattttaacgagcaaaagaagaaagctggcggatccctcgagatgttcatg
acagaagatcagaagaaatattataacgccatgaagaaaatgggcaataagaagcctcta
aaagccattcctcgaccgaggtggcggccgcaggcaatagtgtttgaaatagtgacggac
aaaaagttcgatatgataatcatgttgttcatcgggctgaacatgctcacgatgacgatg
gaccattatcagcagagcgaaacctttggcaatgttctggactatctcaatatgatattc
attgtgatattcaccagcgagtgtctcatgaagatcttcgctcttcgctaccactatttc
aaggagccatggaatctctttgattttgttgttgttatattgtcaatattaggtctggtg
ctcagcgacattattgagaaatatttcgtgtcgccgactttgcttcgtgtagtgagagtg
gcaaaagtcggtcgtgtgcttcgactcgtaaaaggtgccaagggtatccgaacccttctc
ttcgccctggcgatgtcgttgccagccctcttcaacatttgcctattgctgtttttggtg
atgtttatcttcgcgatattcgggatgtctttcttcatgcacgtcaaagataagagcgga
ctggatgacgtgtacaatttcaagacatttgggcaatcgatgatactgctgtttcagatg
tcaacctcggccggttgggacagtgttctcgacggtataataaacgaggaagactgccag
gagccgaacaatgagattggctacccgggcaactgcggatcctcgacgatcgggatcgct
tacctactctcgtatctcgtgatcagctttctgatcgtcatcaatatgtatatcgccgtg
atcctcgagaattactcgcaggccaccgaggacgtacaggaaggtctgacggacgacgac
tacgacatgtactacgagatttggcagcagtttgatccggatggcacgcaatacatcaga
tacgaccagctgtcggacttcttagatgtattggagcccccgttgcagatacataagccc
aacaaatataagatcgtgtcgatggatatccccatatgtaagggagaccttatgttttgc
gtggatatcctcgatgccctcaccaaggactttttcgcacggaagggcaatccaatcgaa
gaaacgggcgatctgggcgaggtccaggctcggcccgatgaggccggttacgagccggtc
tcgtccactctgtggcgacaacgcgaggagtactgtgcccgtcttatacagaacgcctgg
cggaagcacaagcagcagcgtcttggcggaccgagtgaggagagcgacgatccggatacc
gatctgtgcgtccggcagaccaaggtgctcgtcgagagcgacggttacgtcacgaagaat
ggtcaccgcgttgtaatacacagccgatcgccgagcgtcacttcgagaaccgcggacgtc
tga
DBGET
integrated database retrieval system
