Atta colombica: 108694182
Help
Entry
108694182 CDS
T11098
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108694182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108694182
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108694182
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108694182
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
108694182
NCBI-ProteinID:
XP_018058996
LinkDB
All DBs
Position
Unknown
AA seq
2403 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNFEDICQEISDLVQCGGLEADRHLFRCLISCVDFSKG
ELSDSSAKDYFQTKLLKQECNSLLSKPSFISTLCFAIDNPLHHQKSLNFSPKFFTNLKKT
LGLTLVQEVTFAIALQHSENAEIRALALEHTQKQLPELIKNYINSETSNKHQEGGLHDSL
PQVLHLILSQAFHTANPYNLPVETKEKFLKHLRRDFPRELVPVVLAPFLYPADEETLQFK
IELNMAVTQMDSNTLVELIMELGYSFTSNIEECRSALTGLGAREISPACVARVLSQMARS
CSNLDDAGGLQTFWGNSTTSQDSNKEKSSDSTIPTTWNVEVFVLTLKEIQSTLSWNEVIV
KLDHAEFLIKDRQGLNLLITGLKLGLQHQGYPPDMFPVELLYRHWENIEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNIVELLLHMAERGLYNPVQEIFK
WPLQHCPDVLILALLQINPPFTLLRQEMFTTLLPIFLGNHPNSAVILHHAWHANNPKIKT
LIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTVPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQNCSLMLSKSTMNRPPPPGVLRHRALEPFNPATLGSQLFSSK
QVDPLGNLGSSLASMGLSTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLGRLGPPAGIEKARMPETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KEYQTYCEHVRTISHFTEFPPHLVEYIEYGLQGQEPPSRPQGPKTLAAMLAPVTTPYKTM
TTTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEALQDK
TAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCIKL
PEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDIDLK
SLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLN
LKFEIEVLCKNLSIDVGELKPIIYLKDPEKLRNLDYQLSHPNKKSEPTSNQQQSQGPMEE
LVGSTTSGTINPQTAPPADTTPSLPAGQPEPRFNYMDISVTGIANISQHITINNQIPLFQ
THPHLKQFIRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEELRIRTAARHM
ARNLTAGMAMITCRDQILASISTNLKQAFLTALIGTTPQQKELVELAANQVATENMELAC
AFVQKTAIEKAVPEMDKRLLNEVELRKLARQEGRRYCDPIAKYQAERMPEQIRLKVGGIT
PQQMAVYEEFARNIPGFLPLSERDTQTLFIPKPISEAPLTAFTPNSAMAVATAQVTAYAT
VAVSNDEVGAMLEKLATEVEVLATAMAPAVPPQQHAILHSLLESIILTRRSRDINAAMAL
LKKAVEGLLDGPIFNSGVIDSDNLIQRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLIE
CREDYRYNFEAVDYLIRSHLISLPQYDIAVAQAVEAGNALATVFAMQLVQLYLIDERQAT
HVTETDLFHTLEILARMSHHRTPPEGISLYRLTSLVESLRANHDTNAVLVDRAPAGPTAH
IHSGILQVRARDFDDPPGLMDKTEYLLREWVQMHHNPQYARDPTKAFSIFVHQMNIHGIL
KTDDLITRFFKLSTQMCVDLCYRTLSETGLAPSIIRAKCFHSLDAFVRLVALLVKHSGDA
TNTHTKINLLNKVLGIVAGVLLQDHEIRGADFQQLPYHRIFIMLFLELCAPEPVLEAVNF
QVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPGQKCWGMYAQLLIDLFK
YLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLQEIAQPPRVLTNFASTIQPLTFKKELDSYLKARAPVTF
LSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAILFIRSKGHAPNMSTIAHSAHMDIFQ
NLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTILYLFAEANTEAIQEQITRVLLERL
IVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTTETE
IPE
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaaaaaaaatttcgaggacatctgtcaagagatatcggatttggtgcagtgtggtggt
ctagaggcagatcgacatttgttccgctgtctgatatcgtgcgttgacttttccaagggt
gagctgtcagattcgagtgcgaaagattatttccaaacaaagttgctaaaacaggagtgc
aatagcttgttgagcaaaccttcatttatatctactttgtgctttgctatagataatcct
ttacatcatcaaaagtcattgaatttctctccaaagttttttactaatttgaagaaaaca
cttggcttgactttggtacaagaggtcacatttgcgattgcgttgcagcattcagaaaac
gctgaaattcgtgctttagccttagagcatactcaaaagcagctgcctgaattgataaag
aattatataaattctgagactagtaacaagcaccaggaaggtggtttgcacgactcttta
cctcaggtccttcatttaatactcagccaagctttccatactgccaatccatacaattta
cctgtggaaacaaaagaaaaatttcttaaacatttgcgacgtgactttcctcgtgaacta
gtaccagtggtactagcaccattcttgtatccagcagacgaggaaactctgcaattcaaa
attgaattaaacatggccgtcactcaaatggatagcaacactcttgtagagttgattatg
gaattaggatacagttttactagtaatatagaagaatgtcgatcggcgttaacaggtttg
ggtgccagagagatatccccagcatgtgttgctcgtgtattgtcacaaatggcacgtagc
tgtagcaacctggatgatgctggaggcctacaaacattttggggcaattcaactacctcg
caagactccaataaggagaaatcatcggacagtaccattcccacaacatggaatgttgaa
gtattcgtcctaacattgaaagagatacaatctacattgtcttggaatgaggtcatcgtg
aaattggatcatgcagaatttcttattaaggacaggcaaggtttaaacttattgattacg
ggtctcaagttgggcttgcaacatcagggatatccacctgatatgtttcctgttgagctt
ttgtatcggcattgggaaaatatagaaggacaattttctttaattcagcaaatccttaag
tgcccagacatattttgtttcgctgattatccgtatcattcggtaacagtcgatgtattg
aaagcagctcctgaaggcgatagtaaagaaggacaaacttggcgatcattgaacatagtc
gagttacttttacatatggctgaaagaggcttgtacaatcctgtacaagaaatcttcaaa
tggccactccaacattgcccggatgtgctcatcttagcattattacagataaatccacct
ttcacattactgaggcaggaaatgtttaccacgctattgccaatctttcttggcaatcat
ccaaattctgctgtgatactgcatcatgcatggcatgctaataatcccaaaataaaaact
cttataatgcatgctatggcagattggtatacgcgtggtgatcacgatcaaacgagatta
tcgcgcatcttggatgttgcgcaggatttaaaagcactatctgctttacttaattcacaa
tcttttccatttgtcattgatcttgcttgtttggcatctcgacgagagtatctgaaactt
gaaaaatggttaacagacaagattagggatcatggagaagtttttgttgctgcatgtgtc
aaatttctacaacgacggtgtcctcaagtcatgggccctggtatcaaagaagatcctaca
gtccccaaggcaagccaattgccacaggaaacacttactacaattttggcttgcttgcaa
gtttgcgctggaagtgtctcccaagaactttcggaattaataatgacgatggtgcaaaat
tgtagtctaatgctgagtaagagcaccatgaacagaccaccaccaccgggagttctgagg
catcgagcattagaaccgtttaatccggcaactttgggaagccaactattttcctcaaag
caagtggatcctcttggaaatcttggttcaagtctcgcttccatgggtctaagcacgggc
cttggaccgccaagtagctcggcattcaatttgcctggcgcgttaggtcctctggtttcg
gcgcccggatctccttcacgactcatgggaccttctcccagtccatttcctatgttgccg
ctatcttcgcaattacactcaggtccggttggtactcagggaccatctgtgcttcctggt
ggtacaataggtggattgggacgtctcggaccgccagccggtattgagaaagcgagaatg
ccggaaacttccaatttgtttccagatatgggacaaaatgtatccaaagaggtcgaagac
gaagctaatagttattttcaacgtatttacaatcatcctccacatccgactctatcgatc
gacgaagtgcttgatatgttgaaaaaatttcaagactctggtattagacgggagagagaa
gtgtttaactgtatgctgcgaaatttattcgaagaatacagattttttccacagtacccg
gaaaaggaattgcaaataacagcgcaattgttcggtggaattatcgaaagaggtcttgtc
aacagttatatgacacttggattagctctacgattcgttcttgatgcgcttaaaaaacct
gaaggtagcaagatgtattattttggcataacggctttggatcgatttaagagtcgtttg
aaggaatatcaaacatactgcgaacatgtccgaacgatttcgcatttcaccgaatttccg
cctcacttagtggaatatatcgaatatgggttacaaggacaagaaccaccatcaaggcca
caaggtccaaaaactttagcggcaatgttggctccagtaacaaccccgtacaaaactatg
actacaactaccattacaactagcactacacaagcaaaaccatctacgactccgactacg
tctctttcggctagaccctctatgccttcggtcgccaatgcaactaatatcgatacgtta
cttgtggcaacagataaggaagaaaaaattacaacaccaccggaagctttacaagataaa
actgctttcatcttcaataatctcagtcaattgaacctacaacagaaatgtgacgagatc
cgtgagattgtcacggaagaatactggccgtggatggcacagtatttagtgatgaaacgt
gccagtatagaattaaactttcatgctctatactccaattttttggattgtataaaatta
cctgaagtgaataaaatggtaacaagagaaacattccgaaatatcaaggttctcttacga
agcgataagggaatagcaaatttttctgaccggtctctattgaaaaatttaggacactgg
ctcggaatgttgacgcttggcagaaacaaacctattttacagatagacatagatttaaaa
agcttactcgttgaagcatatcacaaagggcagcaagagcttctttatgtagttcccttt
gttgcaaaagtacttgaaagttgtgcaaaaagtcgtgtatttcggccacccaatccatgg
actatggcaatcatgaatgttttagccgaattacatcaagagcctgatttaaaattgaac
ttaaaatttgaaatagaggtactttgcaagaatctcagcattgatgttggggaactaaaa
ccgatcatttacttgaaagatcccgaaaaattacgaaatctggattatcagttgtcacat
ccaaacaagaaatcagagccgactagtaatcaacagcaatctcaggggcctatggaagag
ttggttggatcgacgacgagcggtactatcaatcctcaaactgcgccacctgcggataca
acaccttcattgccagctggtcaacccgagccacgatttaattacatggatatatctgta
acgggcattgctaatatatctcaacacattaccattaacaatcaaatacctctattccaa
acacatcctcatttgaaacaatttattcgccctgctgttgaaagagcaattcaggaatgg
atccatcccgtcgtggataggtccattaaaattgctcttacaaccagcgagcaaattgtg
agaaaagattttgcattggatccagaagaattgcgaatacgtacagcagcgcgtcacatg
gcgcgcaatctaaccgctggcatggctatgattacatgtcgtgatcagatcctggcatcg
attagtacgaatctgaaacaagcgttcctcacagcgttgattggtacgactccacaacag
aaagaacttgtcgaacttgcagcaaatcaagtcgctactgaaaacatggaacttgcatgt
gcatttgtacaaaagacagctattgagaaagcagtacccgaaatggacaaacgactatta
aacgaagttgagttgcgaaaactcgctcggcaagaagggagaagatactgtgatcctatt
gctaagtatcaagctgagagaatgccagagcagataaggctgaaagtcggtggcataacg
cctcaacaaatggctgtatatgaagaatttgctcgaaatattccaggatttcttccgctt
tccgaacgagatacgcaaacactttttataccgaaacctatttctgaggctcctctcact
gcattcacgcccaactctgcgatggcagtcgctacagcacaagtaacagcctatgcaact
gtagcagttagcaacgacgaagtaggtgcaatgctggaaaaacttgcgacggaagttgaa
gtcttggcgactgcgatggcacctgcggtacctccacagcagcatgctattcttcatagt
cttctagaatcgatcatacttacgagaagatcaagagatatcaatgcagctatggcgtta
ttaaagaaagctgttgaaggtttattagatggacccatctttaatagtggcgtcatcgac
tctgataatctaatacaacgttacagagaattacacttacggatcttgaagtgtcttcaa
gatccacgcgcgtacggtatgcaatggaccaacaagcacgtgactcgttgtctaatcgaa
tgccgggaagactaccgatataactttgaagctgtagattacctcataagatctcacttg
attagtcttccgcaatacgacatagctgtagcgcaagctgtagaggcaggaaatgctttg
gcaacagtattcgctatgcaattggttcaactttatttgattgatgagaggcaggcaact
catgttaccgaaactgacttatttcatacacttgagatattggctcgaatgtcacatcac
cgaacaccaccggaaggaatctcactctatagattgacaagtctagtagagtcattacgt
gccaatcacgatacgaatgccgtattggtagacagagctccagcaggacctacggcacat
attcattctggaatcctgcaggtgagagctcgggattttgacgatccacccggactgatg
gataagacagaatatctattacgtgaatgggtgcaaatgcatcataatccgcagtacgcg
cgagatcccacaaaagcatttagcatatttgttcatcaaatgaacattcatggcatcctg
aagactgacgatcttatcacgagattcttcaagttaagcacacaaatgtgcgtcgatctt
tgctaccgaactctatcagaaactggcttagctccctcgataatacgtgcgaagtgcttc
cattcattggatgcattcgtacgtctcgtagcacttctggtgaagcactcgggcgatgct
accaatacccacaccaaaattaatcttttgaataaggtgctgggtatcgtcgccggtgtg
ctgttacaagaccacgaaatacgtggtgccgatttccaacaattgccgtatcatagaatc
tttatcatgctgttcttggaattatgcgcgcccgagccggtactggaggccgtgaatttc
caagttctaactgccttctgtcacactctacacattttgcgaccagcaaaagcatcaggc
ttttgttacgcctggctagaattggtttcgcatcgagtcttcatcggtcgcatgttggct
attacgcccgggcaaaaatgttgggggatgtacgcgcaacttcttatcgatctattcaag
tacctcgcaccttatcttcgaaatgcggagctagcgaagcctgtgacgagtctgtacaaa
gggactttacgtgtgttgctcgtactgcttcatgactttccggagttcctttgcgattat
cattatggattttgcgatgtgataccaccgaattgcatacaaatgagaaatctaatcttg
agtgcgtttccgagaaatatgcgtctacccgatccgttcacgccgaatctgaaggttgat
atgctgcaggaaatagcgcagcctccgcgtgttctcactaattttgcgtcaacaatacag
ccgttgactttcaagaaagaactcgattcttatctgaaggctcgtgcaccggttaccttt
ctatctgaacttcgtagcaatttacaagtgtcgcaagaggccggtgtgcgttataatatt
cagctgatgaatgctctagtgctctacgtaggcacacaagctatactatttattcgcagc
aaaggtcacgctcctaacatgtctactatcgcacattccgcacacatggatatcttccag
aatttggccgtagatctggataccgaaggccgatatttgttcctaaacgccatagcgaat
cagttacgatatcctaatagtcacacgcattacttcagttgtacaattctctacttattc
gcggaagcgaatacggaagcgatacaggaacaaatcacgagggttcttctggaaagactg
attgtaaacagaccacatccatggggacttctcatcacttttatcgaactgatcaagaat
ccgacgtataaattttggtcacacgagtttgtacattgcgcgccggagattgagaaattg
ttcgaatctgtagctaggtcatgtatggtacagaagcaggtacccacaacggaaacggag
attccagagtga
DBGET
integrated database retrieval system
