Aphelocoma coerulescens (scrub jay): 138102940
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Entry
138102940 CDS
T10543
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138102940 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138102940 (SKIC3)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
138102940 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_2
TPR_14
TPR_11
TPR_16
TPR_12
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_9
ANAPC3
TPR_7
TPR_6
ARM_TT21_C
TPR_15
BTAD
TPR_30
TPR-S
TolB_N
HAT_Syf1_M
TPR_20
TPR_5
Motif
Other DBs
NCBI-GeneID:
138102940
NCBI-ProteinID:
XP_068856856
LinkDB
All DBs
Position
Z
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPNQIDVKGDLAHVYQKLLELYESGDKQKWCDVCN
KLVELYHQEKKYLEVAETWQKLIQMKQEEGAEKAELHQLWKKMIQLLKDSTRNQDNKTGQ
LLLTAFEHALNSADVVPGEDHQNLYKDFIQCLSKFPHEVARLEKACHDMMALYPITSYPL
EVLCLHFIHSGTLSEKALHCFSRLLEMDASSGPGIVGFGIKCLKEKKYKEAVKSLTEGLQ
KTNQCPAAWHYLAEAQMKIHEHRNAVLSCNQALDALGTPEGPNLRWKNLALQLKAEALIK
IADADAAEEAIKALEQIVDASSDPVVSALRGQAYLNKGLMDQASKISQELLLSHPDLAEA
HALEGFIHYSQKNYEQAEKSFLSAIEKKAGTAEYHQYLGLTYWFMSDETKKDKGKALTQF
LKAAKFDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELG
DMDTALSILNEVTGKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYLNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNYLDRKAVDYIEQALAYFTRAVKHRPDISCLWKLLGD
TCTSVHVISPTKVNVQVLGSLLGKNATKQMLKKSDLLILGGRCYGRALKLMPLPSIWCDL
GINYYRQAEYLTAVGTDMNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAIGN
YALAQHSFIKSVQAEQINIVAWTNLGVLYLATGNIEQAHEAFKVAQSLEPSYLLCWIGQA
LIAETIGSYDTMDLFRHTTELNMHTEGAKGYAHWVCSTLQDKANRNTELYLYNIVQMNAI
PAAQVVLSKYTERNPDDPSAFTMFGFLNEYLHLKQQATYAYERAASLLKNSEDTEKYNTA
MQNYGRSLCALGRCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSIAE
SEEDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDATLATA
ALKELLKHEKGNDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPDNPALWSLLSRVV
PLYTSKKPEGGAVAGGVAHTLDVNCGKEVLLNIAVNQLVAGCHMLEDKQNNPLKNIQKAI
HVCPDNPAAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGESNLPHNYVHT
LEDWCLCQAITSLEETGKLPEAEALCNKGLKSCPEHPTLFLLLRQVQCKQLLQTHKELPD
NIVEELRKTVMSSSSSAAAWQWLAKVYQSQRMMTGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEICMANVSNEHWPSLVQEATTEALKLSPCPLAALLQALLQYNRKMGARETRR
MLERIVYQPANPKTIVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaagaggtgaaggcagccttaaagagtgctagagatgccataagaaataaa
gagtataaggaggcattaaaacattgcaaggcagtcttgaagcaagaaaagaataactac
aatgcttgggtattcattggcctggcagctgctgagttagagcagcctgatcaggccaaa
ggagcatataagaaggctattgaacttgaaccaaaccagttactggcatggcagggatta
gcaaatttatatgagaaacccaaccaaatagatgtcaaaggagacttagcacatgtttac
caaaaactcttggaactctatgaaagtggtgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggaactatatcatcaagaaaagaaatatttagaggtggctgaaacttggcag
aaactaatacagatgaaacaggaggaaggtgcagaaaaagcagagcttcatcagctttgg
aagaagatgatccagttactgaaggacagtacaaggaaccaggataataagactgggcag
ttgcttttgactgcatttgaacatgcgctgaactctgctgacgtggttcctggtgaagac
caccaaaatctttacaaagacttcatacagtgcttgtcaaaatttcctcatgaagtagct
aggttggaaaaggcctgtcatgatatgatggctttgtaccctatcacgagttatcctttg
gaagtactttgcttgcactttattcattcaggtactttgtcggaaaaggccctgcactgt
ttctctaggcttttggagatggatgcgagcagtggtccaggcatcgtcggttttggtata
aaatgcctcaaagaaaagaagtacaaggaggctgttaagagtcttactgaaggtttgcag
aagactaaccagtgtccagcagcatggcattatttagcagaggcacagatgaagattcac
gaacacaggaatgctgtcctgtcctgcaatcaagctcttgatgctcttggaactcctgag
ggtcctaatcttcggtggaagaaccttgcccttcagttgaaagcagaggctttgattaaa
atagctgatgctgatgccgcagaagaagccattaaagcacttgagcagatcgtagatgca
agcagtgatccagtggtttcagctctcaggggtcaggcttatctaaacaaaggtttaatg
gatcaggcttcaaagatttcacaagagcttctgttgtcccaccctgatctggctgaagcc
catgctctagagggtttcatccattattcccaaaagaactatgaacaggcagaaaaaagt
tttctaagtgctattgaaaaaaaggctggaactgcagagtatcatcagtacctgggtctc
acatactggttcatgagtgatgagacaaaaaaagacaaaggaaaagcactcactcagttt
ttgaaggctgcaaaatttgacagctacttgggaagtgccttttgttacctaggtaactac
tacagagacattgctggagacaaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatgagacggatgaagaatctggaacagcagctgtaaacttaagcgtggaacttgga
gacatggacactgctctgtcaatcctgaatgaagtaactggaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttattacctgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttacttgaacagaggtagctactcaacagctctgaaatccttcagg
aaagcaagtgagctgaacccaggacttgtgtacagcatttacagagctgcagcgcttgag
cagattctaggcaaatatgaaaatgctatagctacctatcaacaaattttaaagaagaca
gaaaactatgtgcctgcactgaaaggacttggtgagtgttatctcatgctggcaagatca
gcccttgataactatttggataggaaggctgtggattacatagagcaggccctggcatat
tttacaagggcagtaaagcaccgtcctgatatatcttgcctctggaaactgttaggagat
acctgtactagtgtgcatgttatttcgccaaccaaagtgaatgttcaagtactaggatcc
cttctgggtaaaaatgcaaccaaacagatgctgaagaaaagcgatctgctcatattggga
ggaaggtgttatggtagagctttaaaactgatgcctttgcctagcatatggtgtgatctt
ggaataaattattatcgacaagcggagtacctcacagcagtgggcactgacatgaatgag
atcagtgaactgctagagaagtctttgcagtgtctcaaaaaagctgtgagacttgacagc
aaaaatcatctttattggaatgcacttggtgtagttgcttcttgtagtgctattgggaat
tatgctcttgctcaacattcgtttatcaaatctgttcaagctgagcaaattaatattgtt
gcctggaccaacttgggggttttgtatctggcaactggaaacattgagcaagctcatgaa
gccttcaaggtagcccagtctctggagccttcttacttgttgtgttggattggacaggca
cttattgcagagaccataggcagctatgatactatggatctcttcaggcacacgactgaa
ctcaatatgcatactgagggagcaaaaggctatgcccactgggtatgttcaacgctgcag
gataaagccaacagaaacactgaactgtatctgtacaacattgttcagatgaatgctata
ccagcagcccaagtggtcttgagcaaatatacagaaagaaatccagatgatccttctgct
ttcacaatgtttgggtttttgaatgagtatctacatctaaaacagcaggcaacctatgcc
tatgagagggcagcttcactgctgaaaaactcagaggatactgagaaatacaacacagca
atgcaaaactatggcaggtcactgtgtgctcttgggcggtgtgatgaggccattgaagtt
tacacatcaatacccctcactgagtttgatggtattgtggggctagcgttagcttacttc
aagaaaggactattagaagaaagtatcaaagcctatgaaaaagccttgtctattgctgag
tctgaagaagataaagcgcatatcctgactgccttggcaataatagaatataaactgaac
aaagtagatgctgcaaagacactgctgtttaaatgctcattaaaggaacctagtacagaa
agtctgaaggctttgtgcacactgggattggtgaagcaggatgcaacacttgcaacagca
gccctaaaagaattactgaagcatgaaaaagggaatgatgggatttatgagaggtgcctt
attgcatctgctgtttatgcattacaaggtagaaatgtggcaatccagagagaagtctcc
aaagcaatacacagttaccctgataatcctgccctttggtctcttctgtctcgagtagtt
ccactgtatacatcaaaaaagccagaagggggagctgtggcaggaggtgttgcacataca
cttgatgtaaactgtggaaaggaagtcctgctgaatattgcagttaatcagctggtagca
ggatgtcacatgttagaagataagcaaaacaatcctctgaaaaatattcagaaggccatc
catgtctgtccagataatcctgctgcttgggcagtgctaatggcagcctgtcatgctgaa
aacactgttgtctgtctaaacaacactgaaccgaaacgaacaggtctggagatgacactt
gtgtctacagtttcagccaaaactggagaaagtaaccttccacataattatgtccatact
cttgaagactggtgtctgtgtcaagctattaccagtctagaggagactggtaaactgcca
gaagctgaagctctttgtaacaagggtctaaaaagctgccctgagcacccaactctgttt
ctgcttttgagacaagttcagtgtaagcagctgttgcagactcacaaagaacttccagac
aacatcgtggaggaacttcgtaagacagtcatgtccagttcatcctcagctgcagcatgg
caatggctggcgaaagtatatcagtctcagagaatgatgacaggagcagagatgtgctac
agaaagagtctgcagttggcatcacagcagggcagctggaatgggaagttatccagtctg
cttaggcttgctatgctcgcactggaaatctgcatggctaatgtctcaaatgaacattgg
ccctcattggttcaggaggcaacaactgaagctttgaaactttctccttgcccattggca
gctctgcttcaagcactgctacagtataatcgcaaaatgggagcaagggagactcggcga
atgttggagagaatcgtttatcaaccagcgaatcccaaaaccattgtgtcggtggcacgc
tggtatctcctgcaacatctgtatgccaaagatgattgtgaactaatagatgtgcttata
gaaaatgccaaagctaatggagatgttagagctctggaactaaatgagaaattgtcagca
agtgcatag
DBGET
integrated database retrieval system
