Aphelocoma coerulescens (scrub jay): 138109502
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Entry
138109502 CDS
T10543
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03020
RNA polymerase
acoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
138109502 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
138109502 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138109502 (POLR2B)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138109502 (POLR2B)
Enzymes [BR:
acoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
138109502 (POLR2B)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138109502 (POLR2B)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138109502 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
138109502
NCBI-ProteinID:
XP_068869122
LinkDB
All DBs
Position
4:21324290..21342413
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgatgaagacgatgatgaaattacccccgac
ctgtggcaagaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagctggattcctttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgcctcaggagaagtggaagag
ccaccccggtatctgttgaagtttgaacagatctatctctccaaacctacacattgggaa
agagatggagcaccctcacctatgatgccaaatgaagccagactgagaaatcttacgtat
tctgcccccttgtatgtggatataactaaaacagttattaaagaaggagaggaccaattg
cagacccagcaccagaaaacctttataggaaaaatccctatcatgttgcgttccacgtac
tgtttgctgaacggcttaactgaccgtgatctttgtgagctgaacgagtgcccgcttgat
cctggtggctacttcatcattaatggatcagaaaaggttctgattgctcaggagaagatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcgtgtctggaaaattcctctcgaccaacaagtactatatgggtcagcatgctg
gccagaggtggacagggtgcaaagaagagtgccattggtcagcgcattgtagcaactctg
ccgtacatcaaacaagaggtgcccatcatcattgtcttccgtgcactcggctttgtgtcc
gacagggacattctggagcacatcatatatgattttgaagacccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtacgccaaa
gaagtcttgcagaaagaaatgctcccacacgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagattgttgctggcagcactgggaagaaga
gagctggatgacagagatcattatggcaacaagagactggatcttgctgggccactcttg
gctttcctgttcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacag
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcagatggcttgaaatactcattggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgacttttgcatccacactgtcc
cacctgagacgcctgaattctcccattgggagagatggaaaactggccaagccccggcag
ctgcacaacaccctgtggggaatggtttgccctgctgagacccctgagggtcatgcagta
ggacttgtgaagaacttagccttgatggcttacatttctgtggggtctcagccatccccg
attctggaattcttggaggagtggagtatggaaaacctagaagaaatctctccagcagca
atagctgatgctaccaagatctttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctcatgaataccctaaggaaacttcgtcgtcagatggacatcattgtgtcagag
gtctcgatgattagagatattcgtgagcgagaaatccgcatctacaccgatgcaggcaga
atttgtcggccccttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccaactgaaggaacgagagtataacaactacagttggcaggatctcgtggccagtggt
gtagtagagtacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtggcgtattgttcaacatatacacactgtgagattcaccca
tccatgatcctgggagtgtgtgcatctattatccctttccctgatcacaaccagtctccc
aggaacacctaccagtctgctatgggtaaacaggctatgggagtgtacattaccaacttc
catgtccgtatggacacgctggcacatgtgctgtattatccccagaagcccctggtaaca
acacgctccatggagtacttgaggttcagagagttaccagcaggtatcaactcgatcgta
gccattgcatcatacacaggctataaccaagaagactctgtcatcatgaaccgttctgct
gttgacagaggctttttcagatctgtgttctatcgctcatacaaagagcaggagtctaag
aaagggtatgaccaagaggaagtttttgaaaagcccacacgtgaaacttgccaaggtatg
agacacgcaatctatgacaaacttgatgatgatggtttgatagcccctggggtccgtgtg
tctggggatgatgtcatcattggcaaaacagtcacactgccagaaaatgaagacgagctg
gaaagcacgaacagacgcttcaccaagagagactgcagcaccttcctgcggaccagtgag
actgggattgtagatcaggtcatggtaaccctgaaccaggaaggatacaagttctgcaag
attagggtacgttctgtaagaattccacaaattggagataaattcgctagcagacacggt
cagaaaggaacctgtggtatccagtacaggcaagaggatatgcccttcacgtgtgaaggc
atcacacctgatatcattatcaacccccatgccatcccttcccgtatgaccattggtcac
ttgattgagtgtcttcagggcaaggtgtctgcgaacaagggagaaattggtgatgctaca
ccctttaatgatgctgtcaatgtgcaaaagatttccaatcttttatcagattatggctat
catctaagaggaaatgaggtcctctacaatggcttcactggtcgaaaaatcacatcccag
atcttcattggtcctacctattaccagcgtttgaagcacatggtggatgacaaaatccat
tctcgtgcaagagggccaatccagatccttaacagacagcccatggaaggcagatctcgt
gatggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaaggttgtttgaagcttcagacccataccaagtccatgtgtgtaac
ctctgtggaatcatggcgattgcaaacacgaggactcacacctacgaatgccgcgggtgc
cgtaataaaactcagatatctttggttcgaatgccctatgcctgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag
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