Aphelocoma coerulescens (scrub jay): 138113018
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Entry
138113018 CDS
T10543
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
acoe04040
]
138113018 (SCN2A)
Ion channels [BR:
acoe04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
138113018 (SCN2A)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQCJ-SCHIP1
IQ
ATP-synt_B
Neur_chan_memb
HB_ELP1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
138113018
NCBI-ProteinID:
XP_068876890
LinkDB
All DBs
Position
7:complement(21163338..21240311)
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AA seq
2018 aa
AA seq
DB search
MAQSVLVPPGPDSFRYFTRESLAAIEQRINEEKAKKSKQERKDDDDEDGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFETTVISIFNSSI
GENGTFINATMTTFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAAAADSRDYSGVGGI
GGFSESSSEASKLSSKSAKERRNRRKKKKQKEQSEGEEKDGEEFHKSESEDSIKKKGFRF
SIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHS
TFEDNESRRDSLFVPHRHGERRNSNISQASRSSRTVPALPANGKMHSTVDCNGVVSLVGG
PPALTSPTGQLLPEVMIDKAATASNGTTTETDLRKRHSSSYHVPMDYLTDPSARQRAMSI
ASMLTNTMEELEESRQKCPPCWYKFANTCLIWDCCTPWLKVKHIVNLIVMDPFVDLAITI
CIVLNTLFMAMEHYPMTEQFSGVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFD
GFIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLV
LAIIVFIFAVVGMQLFGKSYKECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEWIETM
WDCMEVAGQTMCLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAV
ARIQKGIDYVKRKVREFIQKAFVRKQKVLDEIKPLEDLNNKKDSCISNHTIVDIGKNLAY
LKDGNGTTSGIGSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESD
LEESKEKLNASSSSEGSTVDIGLPPEGEQPEAEPEEVLEPEACFTEGCVRRFKCCQVSVE
EGKGKVWWNLRKTCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADK
VFTYIFILEMLLKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRT
LRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCV
NTTTDERFDISQINNFSQCEELIQNNETARWKNVKVNFDNVGLGYLSLLQVATFKGWMDI
MYAAVDSRNVLDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQD
IFMTEEQKKYYNAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQAFDISIMILICLNMVT
MMVETDDQSEDMENILYWINLVFIVLFTGEFVLKLISLRHYYFTIGWNIFDFVVVILSIV
GMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLL
FLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSG
EPDCDPHKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESA
EPLSEDDFEMFYEVWEKFDPDATQFIEFSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMV
SGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEV
SAVIIQRAYRRHLLRQKVKKVSCIFSQDKGKEEDDLPMKEDMIMDKLNENSTPEKTDMTP
STTSPPSYDSVTKPDKDKYEKDKSEKEDKGKDSRESKK
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccaccaggacccgacagcttccgctatttcacgagagaa
tcacttgcagctattgaacagcgcatcaatgaagagaaagctaaaaaatccaaacaagaa
cgcaaagatgatgatgatgaagatggccccaagccaaacagtgacttggaggcaggaaag
acactgccatttatttacggcgacatacctcccggaatggtgtctgagcccttggaagac
ctggacccatattatatcaataaaaaaacttttatagtattgaataaagggaaggcaata
ttccgattcagtgccacctctgccctgtacatgttaactcctttcaatcctcttagaaaa
atagctattaagattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagaatac
acattcactggaatttatacctttgaatcacttattaaaattcttgcaaggggcttctgt
ttagaagattttacatttctccgagacccatggaattggctagatttcactgtcatcaca
tttgcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcctgaagactattgtgggagcc
ctgattcagtctgtgaagaagctctcagatgtgatgatcctgactgtgttttgtctgagt
gtatttgcactgatagggctgcagctgttcatgggcaacttgaggaataaatgcctacag
tggcctccagacaattctactttcgaaacaactgttatttccatttttaatagctctata
ggtgaaaatggtacatttattaatgcaacaatgacaacatttaactgggatgagtacatc
gaagacaaaagtcatttctacttcttggaaggacaaaatgatgcactactgtgtggcaat
agctcagatgcaggtcaatgcccagaaggatatatatgtgtgaaagctggtagaaacccc
aactatggctacacaagttttgatacattcagttgggcattcttgtcactgtttcgattg
atgactcaggacttttgggagaatctttaccagctgacccttcgtgctgctgggaaaaca
tacatgatattttttgttttggtcattttcttgggttctttctacctgatcaacttgatc
ctggctgtggtcgccatggcctatgaagaacagaatcaagcaacaatggaagaagcagag
cagaaagaggcagaatttcagcaaatgctggaacaactgaaaaagcaacaggaagaagct
caggcggcggcagcagctgcagcagctgactcaagagattatagtggagtaggtggaata
ggtggattctccgaaagttcttctgaggcatcaaaactgagctcaaagagtgctaaagag
agaaggaatagaagaaagaaaaaaaagcaaaaagaacaatctgaaggcgaggagaaggat
ggggaagaatttcacaagtctgaatcagaggacagcatcaaaaagaaaggtttccgattt
tccattgaggggaatagactgacatacgaaaagagattctcttccccacaccagtctttg
ctgagcattcgtggctccctgttttccccaaggcgcaacagcagaacaagtcttttcagc
ttcagaggtcgagcaaaggatgtaggatcagaaaatgactttgctgatgatgagcacagc
acttttgaagacaatgagagcagaagagattctctctttgttcctcatagacacggtgaa
cggcgcaacagtaacattagccaggccagtaggtcatccagaacagtacctgcacttcca
gcaaatgggaagatgcacagcactgtggattgcaacggagtagtttctttagttggtggg
ccgccagctctgacatcgcctacgggacagcttctgccagaggtgatgattgataaagca
gccactgctagcaatggcactacaacagaaactgacttaagaaagagacattctagttct
taccatgttcctatggactacctaacagaccctagtgcaaggcaaagagcaatgagtata
gccagcatgcttacaaacacaatggaagaactggaagaatccagacagaaatgcccacca
tgttggtataaatttgctaacacttgcttgatttgggactgctgtactccctggctgaaa
gtcaagcatattgtaaatttgattgtgatggacccatttgttgatctggccattaccatc
tgcatcgtcctaaacaccttgttcatggccatggagcactacccaatgacagaacagttt
agtggtgtgctttcagtaggaaaccttgtgtttactggaattttcacagcagaaatgttt
ctcaagataattgccatggatccttattattatttccaagagggctggaatatttttgat
ggttttattgtgagtcttagtttaatggaacttggccttgcaaatgtagaaggattatct
gtccttcgatcattccgattgcttcgagttttcaaattggcaaaatcttggccaactcta
aatatgctgattaagattattggcaactcagtgggagctctggggaatctgaccctggtg
ctggccatcattgtgttcattttcgctgtggttgggatgcagctgtttggcaaaagctac
aaggaatgtgtctgcaagatctccagtgactgtgaacttcctcgctggcacatgcatgac
tttttccactctttcctgattgtattccgagtgctgtgtggagaatggatagaaacgatg
tgggactgcatggaggttgcaggccaaaccatgtgccttacagtcttcatgatggtcatg
gtgattggaaacctagtggtactcaacctctttttggccttgctgctgagctcatttagt
tcagacaaccttgctgctacagatgatgataatgaaatgaacaatctccagattgctgtg
gcaaggattcagaaaggcatagattatgtgaagagaaaagtgcgtgaattcatccaaaaa
gcctttgttagaaaacagaaagttttagatgaaatcaaacctcttgaagacctaaacaat
aaaaaagacagctgtatttccaaccatacaatagtagacataggtaaaaaccttgcctat
ctcaaagatgggaatggaactaccagtggcataggcagcagtgtggaaaaatatgttgtt
gatgaaagtgattacatgtcattcataaacaacccaagtctcaccgtgacagtgcccatt
gctgtcggagaatcagattttgaaaatttaaacacagaggagttcagcagtgaatcagac
ctggaagaaagcaaagagaaattgaatgcatccagttcatcagaaggcagcacagttgat
attggactacctccagaaggtgaacagccagaagcagaacctgaagaagttctggagcca
gaagcttgttttacagaagggtgtgtacggagattcaaatgctgtcaagtcagtgtagaa
gaaggaaaggggaaagtctggtggaatcttaggaaaacctgctataagattgttgaacac
aactggtttgagaccttcatagtcttcatgattcttctcagcagcggtgctctggcattt
gaagatatctacatagagcaacgtaaaactatcaagaccatgctggaatatgctgacaaa
gttttcacctatatcttcattctggaaatgcttttaaaatgggtggcttatggctttcaa
acctatttcactaatgcgtggtgctggctggacttcctgattgttgatgtctctttggtt
agcttaacagctaatgccttgggctactcagaacttggtgcgattaaatcccttaggaca
ctaagagctttgagacctctaagagccttgtcgcgatttgaagggatgagggtggtggtg
aatgccctgttaggagcaattccatctattatgaatgtgcttcttgtttgccttatattc
tggctgatctttagtatcatgggagtaaatctatttgctggaaagttttactactgtgtt
aacactacaaccgatgagagatttgatatcagccaaatcaacaactttagtcaatgtgag
gagctcatacaaaacaatgaaactgcccggtggaagaatgtgaaggttaactttgacaac
gtaggccttggttacctttctctgctccaagtggctacgtttaaaggatggatggatatc
atgtacgcagctgtggattctcgtaatgttttggatcagcctaagtatgaagacaacctg
tacatgtatctttactttgtcatctttatcatctttggatcattttttaccttgaacctt
tttattggtgtcatcatagacaatttcaaccagcagaaaaagaagtttggaggtcaagac
atttttatgacagaagaacagaagaaatactacaatgcaatgaaaaaattgggttcaaag
aaaccacaaaagcctatacctcgaccagcaaacaaattccaaggcatggtctttgatttt
gtaacaaaacaagcatttgatatcagtatcatgatacttatctgccttaatatggtcaca
atgatggtagaaacagatgatcagagtgaagacatggaaaatattttatattggattaac
ctggtgtttatcgtacttttcactggagaatttgtcctgaaattgatttcacttcgtcat
tactacttcactataggttggaatatttttgattttgtggttgtcattctctccatagta
ggtatgttcttagctgagatgattgagaagtactttgtatcccccacactattcagagtc
atccgacttgccagaatcggtcgaatcctgcgcctcattaaaggcgctaagggaatccgc
actctgctttttgctctgatgatgtctcttcctgctttgttcaacattgggctgctgctc
ttcctggtcatgttcatctatgcgatatttggcatgtccaactttgcctatgtcaagagg
gaagttgggattgatgacatgttcaactttgaaacgtttggcaacagcatgatctgcctg
tttcagatcaccacgtccgctggctgggatggtttgctcgccccgatccttaacagtggg
gaaccagactgtgacccccataaagatcatccagggagttctgtgaaaggtgactgtggc
aacccttctgttgggattttcttctttgtcagttacattatcatatcctttctggtagtg
gtgaacatgtacatcgctgtgattttggagaacttcagtgttgctactgaagaaagtgct
gaacccttgagcgaggacgactttgagatgttctatgaagtctgggagaagtttgatcct
gatgcaacacaattcatagagttcagtaaattatcagattttgcagcttcattagatcca
cctcttctcatagcaaaaccaaacaaagtccagcttattgcaatggatctgcccatggtg
agcggtgacagaattcactgccttgacatcttgtttgctttcacaaagcgtgtcttgggg
gaaagtggggagatggatgccctcagaatacagatggaagatcggtttatggcagccaat
ccttctaaagtctcctatgaaccaattacaactacattgaaacgaaaacaggaggaggtg
tctgctgtcatcattcagcgtgcttacagacgtcaccttttaaggcaaaaagtcaaaaaa
gtatcatgtatatttagtcaggataaaggtaaagaggaagatgatctgcccatgaaagaa
gatatgattatggataaactcaatgagaactctactccagaaaaaacagatatgacccca
tccacaacctccccaccttcttatgacagcgtaacaaagccagacaaggataaatatgaa
aaagacaagtcagaaaaagaagataaaggtaaagacagcagggaaagtaaaaagtaa
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integrated database retrieval system
