Aphelocoma coerulescens (scrub jay): 138117239
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Entry
138117239 CDS
T10543
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138117239 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138117239 (CNOT1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138117239 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138117239 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
138117239
NCBI-ProteinID:
XP_068883425
LinkDB
All DBs
Position
11:complement(7644498..7700538)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRALAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcatacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcacctcatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtaatttttggtctggctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagtgttgaagaatgtcgcaacataatcgtgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatggcaaagataagagtgacggaagccaagcccatacctggaatgtggaggtc
ttgattgatgttcttaaagagctgaaccctagcctggacttcaaagtagtaacgtacgaa
ttggaccatccaggatttcagattcgtgatagcaagggcctgcatattgtagtctttgga
atccagagagggctgggaatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgccatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatagagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccggatatgctggtattggccttattgcagatcaacacctcctggcataccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggctaaattgtcacgcatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagagaaggatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcgacagcccccacctggagtcatgcccaaaggacgcccgcccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcctctctc
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattcccacctctttccacccaa
aaccagacaaccggtttcagtggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaattgtatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtacccagataaagagctgcacataacagcctgtctcttcgggggcata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagtg
accacctcaaccaccaccaccgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacatagatacgctgctagta
gcaacagatcaaacggagaggattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaaaagagtcagt
attgagcctaactttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaacatcaaggtgctgttgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcgcta
ctgctggaagcatacgttaagggacagcaggaattgctttatgtggtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcagacctccaaacccatggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctaaaaaatttggatgaacagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttatcat
gacatcaacgtctattctttaggaggattggctccacatattactttaaatccaacgatt
ccgctgttccaagcccacccacagctgaagcagtgcgtgcggcaagcgatcgagcgtgca
gtgcaagacctcgtccatccagtggttgatagatccatcaagattgccatgacgacctgt
gagcagatagtcaggaaggactttgccctggactcggaggagtcacggatgcgcgtggct
gctcaccacatgatgcggaacctgactgctgggatggccatgattacctgcagggagcct
ttgctgatgagcatagctaccaacttgaaaaatagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcccagttagcacaggataactgt
gagcttgcctgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacatgctaggcaggaggggcgtcggtac
tgcgatcctgttgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcccaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacaaatttatgacaaatgtatgacagaactagag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagttcaagcattgcgt
agcctcttggaggcagtggtagtggctcggaactcccgggatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagcggggctgacgctgacctc
ctgctccgctatcgtgagtgtcacctgctggtgctgaaggctctgcaggatggccgtgcc
tatggatctccatggtgtaacaaacaaatcactaggtgcctgatcgaatgcagagatgag
tacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcttgttggtggatgagagaagcgttgcccacgtaaca
gaagcagatctgtttcacaccattgagacactcatgagaattaatgctcattccagagga
aatgccccggaaggattaccccagctgatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttct
gagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccagcaggggatcctgaaaacagatgacctgatcacccgttttttccgt
ctttgcaccgaaatgtgtgttgagatcagctatcgagccctggccgagcagcagcacaat
cctgcagccaaccccactatgattcgagccaagtgctaccacaacctggatgcctttgtg
cgactcattgcactgctggtgaagcactctggggaagcaaccaacacagtcacaaagatc
aatctcctgaataaggttcttggtattgtggtgggagttcttctgcaagaccatgatgtt
cggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgttgctgttggaa
ttaaatgctcctgagcacgtgctggagaccatcaacttccagacactcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtatgcccagttattgatcgatctattcaagtacttggctcctttccttaga
aatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatgggttctgtgatgtg
atcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagaccctttcacccccaacctaaaggtggacatgttaagtgagattaatatt
gctccacgaatactcacaaatttcactggtgtgatgccacctcagttcaagaaagacttg
gattcctatctcaaaacccgttctccagtcacctttttgtctgacttgcgtagcaaccta
caagtatcgaatgaacctggcaaccgctacaacatccagctcattaatgcactggtgctc
tatgtaggtactcaagctattgcacacattcacaacaaaggcagcacaccctctatgagc
accattacccactcagctcacatggacatcttccagaatttggcagtagacctggatact
gaaggccggtacctcttcctgaatgccatcgccaaccagctgcggtaccccaacagtcac
acccactacttcagctgcaccatgctctacctgtttgcagaggccaacacagaagctatc
caggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccctgg
ggtctccttattactttcattgagctgataaaaaatccagcgttcaagttctggaaccat
gagtttgttcactgcgctccagaaattgagaagttgttccagtcggttgcacagtgctgc
atggggcagaagcaggcccagcaagtcatggaagggactggtgccagttag
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integrated database retrieval system
