Adelges cooleyi (spruce gall adelgid): 126842608
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Entry
126842608 CDS
T09500
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126842608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126842608
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126842608
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126842608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
126842608
NCBI-ProteinID:
XP_050435606
LinkDB
All DBs
Position
Unknown
AA seq
2468 aa
AA seq
DB search
MNLDSLSYTLSQISYLVANLSKKNYKSSVQEISDAIQLQGFEADRHLLRCLFSHIELRDI
EGPRNISHKDYYQVQHLAQQCKTLLNKPSLTSILCFALDNPLATLKPLKPSIQLFVQLSR
ILHLSPVQEVVFGLVCLESANYSTFALQFVKQKLPELIKLYINSEDNTDQVTEGGLHDSS
PEVLHLILSHVFTVDDKDFGISKEVKEVLLQNLRRDFPLEVAPVLLAPLIYPDKPDRPME
KINQDTASISNTMLEPLLADLIMEMGYSACSSLEECRRHLLSVTGGNNPSITFGPQSIAK
VLSMMIRTHTGLDSQMTLPFWPGDNSSHDIDKTLSNANTWNVEVFVHTVKDLNPSLSWLD
VVKELDHADFIIKDRQGLVVLFSTVRLGLKGQGYHMENFPVEMIYRHWSHSEAQMSLVQH
ILQNSDVFCFADYPYRSVSIDLLKVIPEADNKDINNWRSIELVDLMLFLAERGLCYQVQE
CLKFPAQKCPDLLALALIQSNGPLSLVRHEMISGLIPIFLGNHSNAAVILHHAWNHQNVG
LKHTLVQAMSEWYVRSDHDHVKLSRILDIAQDLKALSLLLSVQQFPFVIDLACLASRREY
LKLDKWLSDKIREHGESFISACVKFLQKRCPQLTGSSAKDENLSKYTPLSSETILTMLNC
LRNINTGNISQDLSEAILMMVTNCTNMYISKVASARINPTAPPPSILRTAQHHRPIEGPS
PQVLVDQLTGLATSLASLGLNPSVQSGSTFTLPGSLGQLVQTPGSPSRNLVGGNASGHSG
FSIMTPSTNAPGPAVSSQLSGPSNMLGRLPPQQSTPSAIGKANHLIDNSLFNDGSMSFPI
PKDIEDEANSYFQRIYNLAPHHSLSIDEVLEMLKRFQDSPVKRDRDVFGCMLKNLFEEYR
FFPAYPEKELITTAHLFGGIIEHGLVTNYRALGLALRFILDALKKTPNSKMYNFGITALE
RFKHRLKEYHQYCVHITAIPHFQQFPQHIIEYVEYGKNQQDPPSARVMDLAATSNGTISQ
GGSFMPNPHNAFKAQSITTTTTTTTVSSASSKLITTNSVMPSRPSIANTTNIDTLLVATE
KDEKLIVPPENVQDKIAFIFNNLSQVNLSTKCEEIRDIITNDYLPWLSQYLVMKRVSIEL
NFHTLYSNFLDCLGNEGLNSLIILETFRNIRVLLKSDKGMANFSDRSLLKNLGHWLGMIT
LAKNKPILLDDIDLKMLLVEAYNKGHQELLFTVPFIAKILESCAKSKVFRPRNPWTMSVM
NCLAELHQEPGLKLTLKFEVEVLCKALNIDLKDLKPGYVLKDPEIAKKLEHQLSSNSENA
KPQPQVQQSVPEQPKVSVPTPQQRHTPILQSKIFITIVSSQAQQPITSSTVQSMTSNTRF
NDELVGHVVAAGGVTTLTSTGSMGISGTPGMSPPLPLVEPKFNYVTFNTANSSQIMSMIT
INSQIPLFINQPTLKTYVRAAIERSIQEWINPVVERSVKIAVISTENIVKKDFGMDPDES
HLRKAAHCMVRNLTSGLAMITCREQIIQTLITNLKQHFLNVLISPTQTQKEMIDYACNMC
ANDNLELACAFVQKTATEKAVIEIDKYLKTEFERRSLSRMEGRRYCDQIVASGQAEFLPD
TLRNKVGLPLPQMIGIYEEFARNIPGFQPLDREAVSLFMPKTGIPPDEISVVYEKLISEI
EALLQLYMTNQRILSNTTQPSNLHGVLEAMMSLRRCRDVVTAASVVNKVVESYLDGLSPS
ANQDLDMSIRYRDIHLSIFRAFQDPRAYNLQWTNKTITKALMESRDELRFNLDAVDLLIR
AGMVNISMYDMHLALSIDNGTNYVAMAYVKQFLQNYLIDNRSNSPITEHHLQATIEALNT
VVLSGRPTPDGLAALIEVIRPSQAENNASVERITSGSGGGGGGSSNSTAHIQHGMLQGRD
FDDPPGLLEKTEYLLKEWLTIYSAAPNRDPGKTFSVYIHQMNVQGILKSDDIITRFFRLS
TQMMVELCYRQIPDQTQSPSTVRAKLFHTIDAYVKLIVLLVKHSGDANAITTKTNLLNKV
LGIVVGVLLQDHDVQATDFHQLPYHRILVTLFLDLNAPDPVLESINYPILAAFCHTYHLL
RPRKVPGFAYGWLELISNRIFIGRLLGLTPQQKRQRTYDQTPVTDVQGWNFYAQLLIDLF
KYLAPFLRNAELAKPVHLLYKGTLRVLLILLHDFPEFLCEFHYGFCDVIPPNCIQMRNLI
LSAFPRNMRLPDPFTPNLKVDVLQEISLSPKISPDFQCYIQPASFKKDLDLYLKTRAPVT
FLSEIRTTMQQSCCEPGMRYNLSLLNAIVLYVGTQAIQHIRSKGLVPNTSTIAHSAHMDI
FQNLSVDLDTEGRYLFLNAIANQLRFPNSHTHYFSCTLLYLFAEANSEAIQEQITRVLLE
RLIVNRPHPWGLLITFIELIKNPAYKFWHHEFVHCAPEIEKLFESVARSCMVHKQPNNTS
DAAETSDI
NT seq
7407 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggattcattgtcatatacgttgtcgcaaatcagctatctcgtcgctaatttg
tcgaaaaaaaactacaagtctagcgttcaggaaatatcagacgcaatccagctgcaagga
tttgaagcagatcgacatctactccgttgcctattttctcatatcgagttgagagatatc
gaaggtcctcgaaatatatcacataaggattattatcaagttcaacatttggcgcaacag
tgtaaaacacttttaaataagccttcgcttacttcaattttgtgttttgcacttgacaat
ccgcttgcaactttaaaaccattaaaaccatcaatacagctattcgtacagctaagtcga
attttacatctcagtcctgtgcaggaagttgtttttgggttggtttgtctggaatcggcc
aactattcaacattcgctttacagtttgtgaaacaaaaactacccgaactaattaaattg
tacattaactcagaggacaacactgatcaagtaactgaaggaggattacacgattctagt
cctgaagttcttcatttgattttaagtcacgtattcaccgttgatgataaagattttggt
ataagtaaagaagttaaggaagttttgttgcaaaatttacggcgagattttcccctcgag
gtcgctcctgttttattggctcctctgatttatcctgataaacctgaccgcccaatggaa
aaaataaatcaagatacagcgtccatttctaacactatgctagaaccactgttagccgat
ttgataatggaaatgggctattcggcttgttcttcgttggaagaatgccgtcggcattta
ctgtcggtgactggtggaaataatccatccattacgtttggtccacagtctattgctaag
gttttatcaatgatgatacgcactcacaccggcttagactcacagatgacgttgccgttc
tggcctggagataacagtagtcatgatattgacaaaacattgtctaatgcaaatacttgg
aatgtcgaagtgtttgtacacaccgttaaagatttgaacccatcgctctcttggttagat
gtagtcaaagaattggatcatgccgattttattattaaagatagacaaggtttagtggtt
ttgttttcaactgttcgtcttggcctcaaaggtcaaggatatcatatggaaaactttcct
gttgaaatgatttacagacactggtcacactctgaagcacaaatgtctctggtacaacat
attcttcaaaattctgacgtcttttgttttgctgattatccatatcgttcggtgtcgatc
gacttgttaaaagtgattcccgaagctgacaacaaagacataaacaattggcgttcgatt
gaacttgtcgacctaatgctatttttggccgaacgaggtctctgctatcaagtacaagaa
tgtttgaagtttccagctcaaaaatgtcccgatttgttagctctcgctcttattcaatcc
aatggaccattgagtttggtcagacacgaaatgatcagcggtctcataccgattttcctt
ggcaaccatagcaatgctgctgttattttgcatcatgcatggaaccatcagaacgttgga
ctcaaacatactttggttcaggcgatgagtgaatggtacgtgcgcagtgaccacgaccat
gtaaaactttcacggattttagacatagcccaagatctgaaagcattatcgttgttactg
agcgttcagcagtttccctttgtcatagatctagcttgcttagcttcacgtcgagaatat
ttaaaattggacaaatggctttctgataaaattcgtgaacacggtgaaagctttatatct
gcatgcgttaaatttttacagaaacgatgcccgcaactaacaggatcgtcagctaaagat
gagaatttatcaaaatacacaccgttatcatccgaaactatattaacaatgttgaactgc
ctaagaaatattaatactggaaatatttctcaagatctgtccgaagctattttgatgatg
gtaaccaattgtacaaacatgtacatttccaaagtggcttcagctcgtattaatccgact
gctccgccaccatctattttacgtacagctcaacaccatagacctatagaaggtccatct
ccacaagtgttggtcgatcaactgactgggcttgctaccagtcttgctagtcttggactc
aacccttcagtacaatctggttccacgtttactttaccagggtctttgggacaattagtt
cagacacctggatcgccgtctcgaaatctagtcggcggcaatgcttctggccatagcgga
ttttccattatgacaccgtctacaaatgctccgggtccggctgtttctagtcagctatcg
ggaccatccaatatgctgggacgtttgcctcctcaacaatcgacaccttcggcgatcggc
aaagctaaccatctcattgacaatagtttattcaacgacggtagtatgtcgtttcccata
ccgaaagatattgaggatgaagctaatagttacttccagcgtatttataacttggcacct
caccattcgctgtccattgacgaagtgctcgagatgttgaaaagatttcaagattctcca
gttaaacgtgatagggatgtatttggctgcatgttgaaaaatttgtttgaagaatacaga
ttttttccagcatatccagaaaaagaacttatcaccactgctcatttattcggcggtata
atcgaacacggtctggttacaaattatagagctttaggtctggcccttcgttttattttg
gatgccttaaagaaaactccaaattcaaaaatgtacaactttggaataacggcgttggaa
cgtttcaaacatcgtttgaaagagtatcatcagtattgcgtacacattacggctattcct
cattttcagcaatttccacaacatattattgagtatgtcgagtatggcaaaaatcaacaa
gatcctccatcggcaagagttatggatttggccgcaacgagtaacggcaccatatcacaa
ggaggatcattcatgcccaatccacacaatgcgtttaaagcccaaagtattactactaca
accacgacaactacagtgtcttctgcatcgtccaaactcataactaccaattctgtaatg
ccatctaggccatctattgcaaataccacaaatatcgacacactgctcgttgcaacagaa
aaagatgaaaagttaattgtcccacccgaaaacgtccaagacaaaatagcgttcattttt
aacaacttgagtcaagttaatctttcgacaaagtgtgaggagattagagatattatcacc
aacgattatttgccgtggctatctcaatatttagttatgaaacgtgtcagtattgagcta
aatttccacacattgtactcaaactttttagactgtttgggcaatgaaggtttgaactcg
ttgatcatattggagactttcagaaacataagagttttattgaaaagtgacaaaggaatg
gccaatttttcagatagatctttgttgaaaaatttaggtcattggttgggtatgattacg
ctggctaaaaataagcctatattgttggacgatattgacctcaaaatgttgctggttgaa
gcctacaacaaaggtcatcaagagttgttatttactgtgccttttattgccaaaattctt
gagtcatgtgctaaaagtaaagtattcagaccgaggaacccttggacgatgtctgtcatg
aactgtttagctgaacttcatcaggaacctggattgaaattaacattgaagtttgaagtc
gaagtgctttgcaaagctttgaacattgatctcaaagatttgaaaccgggttatgtgtta
aaagatcctgaaattgccaaaaaattagaacatcaactatcgtctaattcagaaaacgcg
aaacctcaaccacaagtacaacaaagtgttccagagcaacctaaagtttctgttccaacg
cctcaacaacgacacacgcctattcttcaaagtaaaatatttataacgatcgtttcttcc
caagcacaacagccaatcacctcttcaactgtccaatctatgacttcaaatacaagattt
aacgatgaattggttggccacgtagtggcagcaggaggagtcacaacactgacatcgacc
ggaagtatgggcatcagtggtacgccaggaatgtcgccacctcttccattagttgagcct
aaattcaattatgttactttcaacactgccaactcttcgcaaataatgtcaatgatcact
atcaattctcaaataccattatttataaatcaaccaacacttaagacttatgtgcgggca
gcaatcgaaagatcgattcaagagtggattaatcccgtagtggaaagatccgttaaaatc
gcagtcatctcaactgagaatattgttaaaaaagattttggtatggatccagatgagtct
catttacgtaaggctgcacattgtatggttagaaacttaacctctggcttggctatgatt
acgtgccgcgaacagatcatacaaacattaatcactaacttgaaacaacacttcttgaac
gtattgatttcaccgactcaaactcaaaaagaaatgattgactatgcgtgtaacatgtgt
gcaaatgataacttggaattagcgtgcgcctttgttcagaaaaccgccactgaaaaagcc
gtgattgaaatcgataaatatctaaaaactgaattcgaaagacgcagtttgtctcgaatg
gaaggccgtcgctactgtgaccaaatcgtggctagtggtcaggccgaatttttgccagat
acactacgtaataaagtaggtttaccgcttccgcaaatgataggaatttatgaggaattt
gccagaaacataccaggattccaaccgttggacagagaagccgtttcattattcatgccc
aagactggtatccctccggatgagataagtgtcgtttatgagaaactcatcagtgaaatt
gaagcgctccttcaattgtatatgacaaatcaacgtatcctgtccaatacgacacagcca
tcaaacttgcacggcgtgttggaggcaatgatgtcactgagaagatgtcgagatgttgtg
acagctgcaagtgtcgtcaacaaagtcgtcgagagctatttagatggactaagcccttct
gcaaatcaagatttggatatgagcatcagatatcgagacattcacctcagtatattcaga
gcattccaagatccacgtgcttataatttgcagtggacaaacaaaaccataacaaaggct
ctaatggagtctagggatgaattgcggttcaatttggacgccgtcgatttattgattcgt
gctggtatggtgaatattagcatgtacgacatgcacttggccttatcgatcgataacgga
accaactatgtcgctatggcgtacgttaaacaatttttacaaaattatctcatcgacaat
cgatctaattctccgattaccgaacaccatttacaagcgacaatcgaggctttgaacaca
gttgtgctcagtggtcgtcctacacctgacgggctggcagcgctcatcgaagtaataaga
ccatcgcaggcagaaaacaatgcttccgtggaaagaataacgagtggtagtggtggtggc
ggtggtggcagtagtaactcaactgctcatatacaacatggaatgttacaaggaagagat
tttgatgatccacctggacttctggaaaaaactgaatacttgctgaaagaatggttgact
atttacagtgccgcgcccaacagagatcccggaaagacatttagcgtttacattcaccaa
atgaatgttcaaggaattttgaagtctgacgacataataactcgtttcttccgactgagc
acacaaatgatggtcgaattatgttatcggcaaatacctgatcagacacagtctccgtcc
acggtacgagccaaacttttccacaccattgacgcctacgtgaagctcatagtgctgttg
gtaaaacactctggcgatgcaaatgcaatcaccacgaaaactaatctcttgaacaaagta
cttggaattgttgttggagtattacttcaagatcatgatgtacaagccactgatttccat
caattaccgtatcatagaatattagttactctattcctcgacttgaacgcacccgatcct
gtactagaatcaatcaactacccaatattggcagctttttgtcatacttaccacctgcta
cgtccgagaaaagttcccggttttgcttatggttggctggaattgatatctaatcgcata
tttatcggtcgacttttgggattaactccgcagcaaaagcgacagcgcacttacgatcaa
acgcctgttactgatgtccagggttggaatttctatgcccaactgctgattgacctgttc
aaatacttggcgccattcttgagaaacgctgaacttgccaaacccgttcatttactatac
aaaggaacattacgagtattgctgatattactacacgatttcccagagttcttgtgcgaa
ttccactacggattttgtgacgtcattccgcctaattgtattcagatgaggaatttgata
ttgtctgcattcccgcgaaacatgcgtttaccagatccgtttacgcccaatttgaaagtc
gacgttcttcaggaaatatctttatcgccaaaaattagtccagactttcaatgttacatt
cagcccgcgagcttcaaaaaggatttagatttatatctcaagacaagagctccggtgaca
tttttgtccgagattcgtactacaatgcaacagagttgttgcgaacccggcatgcgttac
aatttatcactcttgaacgctatcgtcttgtatgttggtactcaagctatacagcatata
aggagcaagggtttagtgcccaatacttctacaattgcccattctgctcatatggacata
ttccaaaacttgtctgtggacctcgacactgaaggtcgttacttatttttaaacgctatt
gctaaccagttacgttttccaaacagtcatactcattattttagctgtactcttttatat
ttgtttgccgaagctaacagtgaagccattcaggaacaaataacacgagtacttttggag
agactaattgtcaacagacctcatccgtggggcttattgatcacgtttattgaattaatt
aagaatccagcttataaattttggcaccatgagtttgtgcattgtgcacctgaaatagaa
aagctttttgaatcagtcgcccgttcatgcatggttcataagcaaccaaataacacgtcg
gatgctgccgaaacatcggacatataa
DBGET
integrated database retrieval system
