Achromobacter sp. PD1: ACM1PE_29245
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Entry
ACM1PE_29245 CDS
T11306
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acpd Achromobacter sp. PD1
Pathway
acpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACM1PE_29245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acpd03021
]
ACM1PE_29245 (rpoB)
03400 DNA repair and recombination proteins [BR:
acpd03400
]
ACM1PE_29245 (rpoB)
Enzymes [BR:
acpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACM1PE_29245 (rpoB)
Transcription machinery [BR:
acpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACM1PE_29245 (rpoB)
DNA repair and recombination proteins [BR:
acpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACM1PE_29245 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
XPR17450
LinkDB
All DBs
Position
6210481..6214593
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAPSDRVADGLQAAFSSI
FPIVSHNGMARLEFVSYVLGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTVKE
VKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILCKAIGMTPESILANFFDFDNFELKSEG
AMMEFVPERWKGEMARFDISDRSGKVIVEKDKRINAKHLRDLAAGGIQRISVPEDFLYGR
VLAKNIVDPDTGEVIANANDEITESVLGALRAANVHDIQALYTNDLDRGPYISQTLRTDE
TADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGEDI
TGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSEQIDYLSAIEESHYVIAQANAALDEEGRFVDDLVACREAGETMLTAPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DKVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGITYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVNKTVNGGPRKLAKGATITKAYLADLDRWQWFDIR
LADEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGHRIADMLRDERTAQVKNVRAYLDKVYNTTGTGARIDELTDEEVMEMAQNLKNGVPF
ATPVFDGATEEEITTMLELAYPDDVAKRMALTPSRTQAWLYDGRTGEQFERPVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaagac
gttcaaaacgttcccttcctgttggcgacacagcttcaatcctacctaactttcctgcag
gcggataccgccccgtccgatcgcgtagccgacggtttgcaggcggcgttctcgtcgatt
ttcccgatcgttagtcacaacggtatggcgcgcttggagttcgtgagctatgtgctcggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggcctgacctatgcctcgcccctg
cgagccaaggtccgcctggtgctgcttgaccgcgaagtcagcaagcccaccgtgaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgggcacgggttccttc
gtcatcaacggcaccgagcgtgtcatcgtttcgcagctgcaccgctcgcctggcgtgttc
ttcgagcacgaccgcggcaagacccacagctccggcaagctcctgttctcggcccgcgtg
attccttaccgcggctcgtggctggactttgaattcgatccgaaggacgtcctgttcttc
cgcgtcgaccgccgccgcaagatgcccgtcacgattctgtgcaaggccatcggcatgacg
ccggaatcgatcctggccaacttcttcgacttcgacaacttcgaattgaagagcgaaggc
gcgatgatggaattcgtgcctgagcgttggaagggcgaaatggcccgtttcgacatcagc
gaccgcagcggcaaggtcattgtcgaaaaagacaagcgcatcaacgccaagcatctgcgc
gacctggctgccggcggcatccagcgcatctccgtgccggaagacttcctgtacggccgc
gtgctggccaagaacatcgtcgacccggacaccggtgaagtcatcgccaacgccaacgac
gaaatcacggaaagcgtgctgggcgccttgcgcgccgccaacgtgcacgacatccaggcc
ctctacacgaacgacctggaccgcggcccgtacatctcgcaaacgctgcgcaccgatgaa
accgccgaccagatggccgcgcgcgttgccatctaccgcatgatgcgtcctggcgaaccg
cccaccgaagaagcggtggaagcgctgtttcagcgtctgttctacagcgaagaaacgtac
gatctgtcgcgcgtcggccgcatgaaggtcaacagccgtctgggccgtggtgaagacatc
acgggtccgatgacgctgaccaacgaagatatccttgaaaccatcaaggtgctggtcgag
ctgcgtaacggccgtggccagatcgacgacatcgatcaccttggcaaccgtcgcgtgcgt
tgcgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtcaaggaacgtctgggccaggccgagacggaaaacctgatgccgcacgacctgatcaac
tccaagccgatctcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgcgtttccgcactgggc
ccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaactcc
atggcgctgtacgctcgcctgaacgagtacggcttcctggaaacgccgtaccgcaagatc
atcgacggcaaggtcagcgagcagatcgactacctgtcggccatcgaagaaagccactac
gtcatcgcgcaggccaacgccgcgctggacgaggaaggccgtttcgtggacgacctggtg
gcttgccgcgaagctggcgaaaccatgctgaccgccccggccaacgtgcactacatggac
gttgccccgtcgcagatcgtgtcggtcgccgcctcgctgattccgttcctggaacacgac
gacgcgaaccgcgcgctgatgggcgccaacatgcaacgccaggccgtgccttgcctgcgt
ccggaaaagccggtcgtgggtacgggcatcgagcgcaccgtggccgttgactcgggtacg
accgtgcaagccctgcgtggcggcctggtcgaccacgtcgacgccgagcgcgtcgtgatc
cgcgtgaacgatgaagaaaacgtcgctggcgaagtcggcgtcgacatctacaacctgatc
aagtacacccgttccaaccagaacacgaacatcaaccagcgtcccatcgtcaagcgtggc
gacaaggtcgccaagggtgacgtgctggctgacggcgcatcgaccgacctgggcgaactc
gccctgggtcagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaagac
tcgatcctgatctccgaaaaggttgttgccgatgaccgctacacctcggtgcacatcgag
gaactgacggttgtcgcccgcgacaccaagctgggtccggaagaaatcacgcgcgacatc
agcaacctggccgagacgcaactgaaccgtctggacgattcgggcatcacgtacatcggc
gccgaagtcagcgccgacgacgtgctggtcggcaaggtcacgcccaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgccatcttcggtgaaaaggcgtccgacgttaag
gacacctcgctgcgcgtgccctcgggcatgaccggcaccgtgatcgacgtgcaagtgttc
acgcgtgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctatcgccaggacctgaacgaccagctgcgcatcgttgaaaacgaccagttcgaccgt
atcgaaaagatgctggtcaacaagaccgtcaacggcggcccgcgcaagctggccaagggc
gccacgatcaccaaggcttacctggctgatctggaccgctggcagtggttcgacatccgc
ctggccgacgagccgcacgccgtcgtgctggagcaggccaaggaatcgctggagcagaag
cgccaccagttcgacctggctttcgaagaaaagcgcaagaagctgacgcaaggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctacctggccgtgaagcgtcgtctgcag
cctggcgacaagatggcaggccgtcacggcaacaagggcgtggtctcgcgcatcaccccg
gtggaagacatgccgcacatggctgacggcacgccggccgacatcgttctgaacccgttg
ggcgtgccctcgcggatgaacgtcggccaggtgctggaagtgcacttgggctgggctgcc
aagggcgtgggccaccgcatcgccgacatgctgcgcgacgagcgcactgcgcaggtcaag
aacgtccgcgcctatctggacaaggtctacaacacgaccggcaccggcgcgcgcatcgac
gagctgaccgacgaagaagtcatggaaatggcccagaacctcaagaacggcgtgccgttc
gcgacgcccgtcttcgacggcgcgaccgaagaggaaatcaccacgatgctggaactggcc
tatccggacgacgtcgccaagcgcatggcgctgacgccttcgcgtacgcaggcgtggctg
tacgacggccgcaccggcgagcagttcgagcgtccggtcacggttggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcg
ctggttacccagcagcctctgggcggcaaggcgcagttcggcggtcagcgtttcggggaa
atggaagtgtgggcgctggaagcatacggcgccgcctacaccctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgtaccaaggtatacgaaaacatcgtcaagggcgac
cacgtcatcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ttggccctggacatggatttggagcgtaactaa
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