Actinoplanes sp. L3-i22: L3i22_006220
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Entry
L3i22_006220 CDS
T08939
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3i22_006220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
actl03021
]
L3i22_006220 (rpoB)
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_006220 (rpoB)
Enzymes [BR:
actl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3i22_006220 (rpoB)
Transcription machinery [BR:
actl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3i22_006220 (rpoB)
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3i22_006220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCY05534
LinkDB
All DBs
Position
667474..670914
Genome browser
AA seq
1146 aa
AA seq
DB search
MAASRPAKTSRTSSAYAPRRVSFGRITEQLEVPNLLALQTDSFDWLVGNEAWQARTTDDP
HAHSGLAEILEEISPIEDFSGTMSLSFSAPRFDEVKASIEECKEKDLTYCAPLFVTAEFT
NNTTGEIKSQTVFMGDFPMMTPKGTFVINGTERVVVSQLVRSPGVYFTKEPDKTSDRDLT
SVKVIPSRGAWLEFDIDKRDTVGVRIDRKRRQAVTVLLKAIGWSADQIRERFGWSELLMT
TLEKDHIAGQDEALLDIYRKLRPGEPPTRENAQTLLDNLFFNPKRYDVAKVGRYKFNKKL
EIDVPIVRGTLSEEDIVKTVDYLCRLHAGEEGYEADDIDHFGNRRLRTVGELIQNQVRVG
LSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQTNPLAGLTHR
RRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGALSTFARVNPFGFI
ETPYRKVEAGVVTDEVHYLTADEEDRYIKAQANAVLSSDNTFAQDRVLVRRKGGEVDYVP
GTEVDYMDVSPRQMTSVATAMIPFLEHDDANRALMGANMQRQAVPLVKAESPLVGTGMEY
RAAVDAGDVVVAEVAGVVEDLCADYVTVHQDDGHRRTYLLHKFRRSNAGSCVNQKPVVFE
GDRVEAGQVIADGPCTDEGEMALGRNLLVAFMCWEGHNYEDAIILSQRLVQQDVLTSIHI
EEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIGAEVVPGDILVGKVTPKGET
ELTPEERLLRAIFGEKAREVRDTSLKVPHGETGTVIGVRTFSREDGDELPPGVNELVRVY
VAQKRKIQDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDIVLNPLGVPSRMNIGQVL
ETHLGWIAKTGWSVEGEDEEWKRQLRSIEAHESPADSNVATPVFDGAQEEEIKGLLESTL
LNRDGKRLVNGDGKAQLFDGRSGEPLPDPISVGYVYILKLNHLVDDKIHARSTGPYSMIT
QQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDVLGRVKVYEAIVKGENIP
EPGIPESFKVLLKELQSLCLNVEVLSSDGVALEMRETDDEVFRAAEELGIDLSRRPNEGV
SSVEEI
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagccgtacgtcgagcgcttacgcaccccgccgg
gtctctttcggccggatcaccgagcagctagaggtccccaacctcctcgccctccagacg
gactcgttcgactggttggtcggcaacgaggcttggcaggcgcgtacgacggacgacccg
cacgcccactcgggcctcgcagagatcctcgaagagatcagtcccattgaggacttctcc
ggcaccatgtcgctgtccttctcggctccgcgcttcgacgaggtcaaggcctcgatcgag
gagtgcaaggagaaggacctgacctactgtgccccgctgttcgtgaccgcggagttcacc
aacaacaccactggcgagatcaagagccagaccgtgttcatgggtgacttcccgatgatg
acccccaaggggacgttcgtcatcaacggcaccgagcgggtcgtggtgagccagctcgtc
cgctcgccgggcgtgtacttcaccaaggagccggacaagacctccgaccgcgacctcacc
agcgtcaaggtcatcccgagccggggtgcctggctcgagttcgacatcgacaagcgcgac
accgtcggtgtccgcatcgatcgcaagcgccgtcaggccgtcactgtcctcctcaaggcg
atcggttggtccgccgaccagatccgtgagcgcttcggctggtccgagctgctcatgacg
acgctggagaaggaccacatcgccgggcaggacgaggccctactcgacatctaccggaag
ctgcgccctggcgagcccccgacccgggagaacgcgcagacccttctcgacaacctcttc
ttcaacccgaagcggtacgacgtcgcgaaggtcggccggtacaagttcaacaagaagctc
gagatcgacgtcccgatcgtccggggcacgttgtccgaggaagacatcgtcaagaccgtg
gactacctctgccggctgcacgccggtgaggagggctacgaggccgacgacatcgaccac
ttcggcaaccgtcgtctgcgcaccgtcggcgagctcatccagaaccaggtccgcgtcggc
ctgtcccggatggagcgcgtcgtccgcgagcggatgacgacccaggacgtcgaggcgatc
acgccgcagaccctgatcaacatccgccccgtggtggctgcgatcaaggagttcttcggt
acgtcgcagctgtcgcagttcatggaccagaccaacccgctcgcgggtctgacccaccgt
cgccgtctgtcggcgctcggcccgggtggtctgtcccgtgagcgggccggcttcgaggtc
cgtgacgtgcacccgtcgcactacggccggatgtgcccgatcgagacgcccgagggtccg
aacatcggcctgatcggcgcgctctcgacgttcgcgcgggtcaacccgttcgggttcatc
gagacgccgtaccgcaaggtcgaggccggtgtcgtcaccgacgaggtgcactacctcacg
gccgacgaggaagaccggtacatcaaggcccaggcgaacgccgtgctgtccagtgacaac
acgttcgctcaggaccgcgtcctggtccgccgtaagggcggtgaggtcgactacgtgccc
ggcaccgaggtcgactacatggacgtgtcgccgcggcagatgacctcggtcgcgaccgcg
atgatcccgttcctcgagcacgacgacgcgaaccgcgcgctcatgggcgcgaacatgcag
cgtcaggccgtgccgctggtcaaggccgagtcgccgctggtcggcaccggcatggagtac
cgcgccgcggtcgacgccggtgacgtggtcgtcgccgaggtcgccggtgtggtcgaggac
ctgtgcgccgactacgtgacggtgcaccaggacgacggccaccgccggacctacctgctg
cacaagttccgccgctcgaacgccggctcctgcgtcaaccagaagccggtcgtcttcgag
ggtgaccgcgtcgaggccggccaggtcatcgccgacggcccgtgcaccgacgagggggag
atggccctcggccgcaacctcctggtcgcgttcatgtgctgggaaggccacaactacgag
gacgcgatcatcctgtcgcagcgcctcgtgcagcaggacgtcctcacctcgatccacatc
gaggagcacgaggtcgacgcccgcgacaccaagctcggcccggaagagatcacccgcgac
atcccgaacgtcagcgaggaaatgctggcggacctggacgagcgcggcatcatccggatc
ggcgccgaggtcgtgcccggcgacatcctggtcggcaaggtcacgcccaagggcgagacc
gagctgaccccggaggagcgcctgctccgcgcgatcttcggggagaaggcccgggaagtc
cgggacacctcgctgaaggttccgcacggcgagaccggcaccgtcatcggcgtccggacg
ttctcccgcgaggacggcgacgagctgcccccgggcgtgaacgagctggtccgggtgtac
gtcgcccagaagcgcaagatccaggacggcgacaagctcgccggccggcacggcaacaag
ggcgtcatctccaagatcctgccggtcgaggacatgccgttcctcgaggacggcaccccg
gtcgacatcgtgctcaacccgctcggtgtgccctcgcgtatgaacatcggccaggttctg
gagacccacctcgggtggatcgccaagaccggttggtcggtggagggcgaggacgaggag
tggaagcgtcagctccgctcgatcgaggcgcacgagtcccccgccgacagcaacgtcgcg
actccggtcttcgacggcgctcaggaggaggagatcaagggcctgctcgagtcgaccctg
ctgaaccgggacggcaagcgcctggtcaacggtgacggcaaggcgcagctgttcgacggc
cgctccggtgagccgctgccggacccgatctcggtcggctacgtctacatcctgaagctg
aaccacctggtcgacgacaagatccacgcgcggtcgaccggcccgtactcgatgatcacg
cagcagccgctcggtggtaaggcccagttcggtggccagcggttcggcgagatggagtgc
tgggcgatgcaggcctacggtgcggcttacgcgctgcaggaactgctgaccatcaagtcc
gacgacgttctcggccgagtgaaggtctacgaggccatcgtcaagggcgagaacatcccg
gagccgggaatcccggagtcgttcaaggtgcttctcaaggagctccagtcgctgtgcctg
aacgttgaggtgctctccagcgacggtgtggccctggaaatgcgcgagaccgacgacgag
gtcttccgggccgcggaggaactcggcatcgacctgtcccgacgcccgaacgagggcgtc
agcagcgtcgaagagatctga
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